Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
01:45:37 (330387): wrapper (7.7.26015): starting
01:45:37 (330387): wrapper: running run_atlas (--nthreads 4)
[2025-06-29 01:45:37] Arguments: --nthreads 4
[2025-06-29 01:45:37] Threads: 4
[2025-06-29 01:45:37] Checking for CVMFS
[2025-06-29 01:45:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-29 01:45:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-29 01:45:38] Running cvmfs_config stat atlas.cern.ch
[2025-06-29 01:45:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-29 01:45:38] 2.13.0.0 3500275 402 42672 147711 1 187 3546574 6144000 13871 130560 0 2437730 99.999 14703 581 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-29 01:45:38] CVMFS is ok
[2025-06-29 01:45:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-29 01:45:38] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-29 01:45:38] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-29 01:45:38] Further information can be found at the LHC@home message board.
[2025-06-29 01:45:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-29 01:45:38] Checking for apptainer binary...
[2025-06-29 01:45:38] apptainer is not installed, using version from CVMFS
[2025-06-29 01:45:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-29 01:45:38] mz32
[2025-06-29 01:45:38] apptainer works
[2025-06-29 01:45:38] Set ATHENA_PROC_NUMBER=4
[2025-06-29 01:45:38] Set ATHENA_CORE_NUMBER=4
[2025-06-29 01:45:38] Starting ATLAS job with PandaID=6712495944
[2025-06-29 01:45:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/34 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-29 06:34:53]  *** The last 200 lines of the pilot log: ***
[2025-06-29 06:34:53] 2025-06-29 13:34:19,667 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 1992.0149218749998
[2025-06-29 06:34:53] 2025-06-29 13:34:19,701 | INFO     | using path: /var/lib/boinc-client/slots/34/PanDA_Pilot-6712495944/memory_monitor_summary.json (trf name=prmon)
[2025-06-29 06:34:53] 2025-06-29 13:34:19,702 | INFO     | extracted standard info from prmon json
[2025-06-29 06:34:53] 2025-06-29 13:34:19,702 | INFO     | extracted standard memory fields from prmon json
[2025-06-29 06:34:53] 2025-06-29 13:34:19,702 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-29 06:34:53] 2025-06-29 13:34:19,703 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-29 06:34:53] 2025-06-29 13:34:19,703 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-29 06:34:53] 2025-06-29 13:34:19,708 | INFO     | fitting pss+swap vs Time
[2025-06-29 06:34:53] 2025-06-29 13:34:19,709 | INFO     | sum of square deviations: 7028008982.0
[2025-06-29 06:34:53] 2025-06-29 13:34:19,712 | INFO     | sum of deviations: 24635909570.00002
[2025-06-29 06:34:53] 2025-06-29 13:34:19,712 | INFO     | mean x: 1751195402.0
[2025-06-29 06:34:53] 2025-06-29 13:34:19,712 | INFO     | mean y: 2347167.282685512
[2025-06-29 06:34:53] 2025-06-29 13:34:19,712 | INFO     | -- intersect: -6136274976.423594
[2025-06-29 06:34:53] 2025-06-29 13:34:19,712 | INFO     | intersect: -6136274976.423594
[2025-06-29 06:34:53] 2025-06-29 13:34:19,712 | INFO     | chi2: 1.4606659457235787
[2025-06-29 06:34:53] 2025-06-29 13:34:19,713 | INFO     | sum of square deviations: 6662039329.5
[2025-06-29 06:34:53] 2025-06-29 13:34:19,715 | INFO     | sum of deviations: 23322352833.000004
[2025-06-29 06:34:53] 2025-06-29 13:34:19,716 | INFO     | mean x: 1751195249.5
[2025-06-29 06:34:53] 2025-06-29 13:34:19,716 | INFO     | mean y: 2346621.54676259
[2025-06-29 06:34:53] 2025-06-29 13:34:19,716 | INFO     | -- intersect: -6128207622.926266
[2025-06-29 06:34:53] 2025-06-29 13:34:19,716 | INFO     | intersect: -6128207622.926266
[2025-06-29 06:34:53] 2025-06-29 13:34:19,716 | INFO     | chi2: 1.4604845680982788
[2025-06-29 06:34:53] 2025-06-29 13:34:19,717 | INFO     | current chi2=1.4604845680982788 (change=0.012417461078690064 %)
[2025-06-29 06:34:53] 2025-06-29 13:34:19,717 | INFO     | right removable region: 277
[2025-06-29 06:34:53] 2025-06-29 13:34:19,717 | INFO     | sum of square deviations: 6662039329.5
[2025-06-29 06:34:53] 2025-06-29 13:34:19,719 | INFO     | sum of deviations: -13468182527.500002
[2025-06-29 06:34:53] 2025-06-29 13:34:19,720 | INFO     | mean x: 1751195554.5
[2025-06-29 06:34:53] 2025-06-29 13:34:19,720 | INFO     | mean y: 2362901.8956834534
[2025-06-29 06:34:53] 2025-06-29 13:34:19,720 | INFO     | -- intersect: 3542633411.0946603
[2025-06-29 06:34:53] 2025-06-29 13:34:19,720 | INFO     | intersect: 3542633411.0946603
[2025-06-29 06:34:53] 2025-06-29 13:34:19,720 | INFO     | chi2: 0.06575873562076365
[2025-06-29 06:34:53] 2025-06-29 13:34:19,720 | INFO     | current chi2=0.06575873562076365 (change=95.49803048306241 %)
[2025-06-29 06:34:53] 2025-06-29 13:34:19,721 | INFO     | sum of square deviations: 6309000152.0
[2025-06-29 06:34:53] 2025-06-29 13:34:19,723 | INFO     | sum of deviations: -11215045810.000004
[2025-06-29 06:34:53] 2025-06-29 13:34:19,723 | INFO     | mean x: 1751195707.0
[2025-06-29 06:34:53] 2025-06-29 13:34:19,723 | INFO     | mean y: 2361917.322344322
[2025-06-29 06:34:53] 2025-06-29 13:34:19,723 | INFO     | -- intersect: 3115333799.2542853
[2025-06-29 06:34:53] 2025-06-29 13:34:19,723 | INFO     | intersect: 3115333799.2542853
[2025-06-29 06:34:53] 2025-06-29 13:34:19,724 | INFO     | chi2: 0.060630719234723685
[2025-06-29 06:34:53] 2025-06-29 13:34:19,724 | INFO     | current chi2=0.060630719234723685 (change=7.798228383851052 %)
[2025-06-29 06:34:53] 2025-06-29 13:34:19,724 | INFO     | left removable region: 20
[2025-06-29 06:34:53] 2025-06-29 13:34:19,724 | INFO     | sum of square deviations: 5263458688.0
[2025-06-29 06:34:53] 2025-06-29 13:34:19,726 | INFO     | sum of deviations: -488979171.99999195
[2025-06-29 06:34:53] 2025-06-29 13:34:19,727 | INFO     | mean x: 1751195829.0
[2025-06-29 06:34:53] 2025-06-29 13:34:19,727 | INFO     | mean y: 2356117.8365758755
[2025-06-29 06:34:53] 2025-06-29 13:34:19,727 | INFO     | -- intersect: 165043494.56597015
[2025-06-29 06:34:53] 2025-06-29 13:34:19,727 | INFO     | intersect: 165043494.56597015
[2025-06-29 06:34:53] 2025-06-29 13:34:19,727 | INFO     | chi2: 0.027375480202376495
[2025-06-29 06:34:53] 2025-06-29 13:34:19,727 | INFO     | -- intersect: 165043494.56597015
[2025-06-29 06:34:53] 2025-06-29 13:34:19,727 | INFO     | current memory leak: -0.09 B/s (using 257 data points, chi2=0.03)
[2025-06-29 06:34:53] 2025-06-29 13:34:19,728 | INFO     | could have reported an average CPU frequency of 1994 MHz (13 samples)
[2025-06-29 06:34:53] 2025-06-29 13:34:19,728 | INFO     | ..............................
[2025-06-29 06:34:53] 2025-06-29 13:34:19,728 | INFO     | . Timing measurements:
[2025-06-29 06:34:53] 2025-06-29 13:34:19,728 | INFO     | . get job = 0 s
[2025-06-29 06:34:53] 2025-06-29 13:34:19,729 | INFO     | . initial setup = 10 s
[2025-06-29 06:34:53] 2025-06-29 13:34:19,729 | INFO     | . payload setup = 12 s
[2025-06-29 06:34:53] 2025-06-29 13:34:19,729 | INFO     | . stage-in = 0 s
[2025-06-29 06:34:53] 2025-06-29 13:34:19,729 | INFO     | . payload execution = 17247 s
[2025-06-29 06:34:53] 2025-06-29 13:34:19,729 | INFO     | . stage-out = 3 s
[2025-06-29 06:34:53] 2025-06-29 13:34:19,729 | INFO     | . log creation = 0 s
[2025-06-29 06:34:53] 2025-06-29 13:34:19,729 | INFO     | ..............................
[2025-06-29 06:34:53] 2025-06-29 13:34:19,935 | INFO     | 
[2025-06-29 06:34:53] 2025-06-29 13:34:19,936 | INFO     | job summary report
[2025-06-29 06:34:53] 2025-06-29 13:34:19,936 | INFO     | --------------------------------------------------
[2025-06-29 06:34:53] 2025-06-29 13:34:19,936 | INFO     | PanDA job id: 6712495944
[2025-06-29 06:34:53] 2025-06-29 13:34:19,936 | INFO     | task id: 45399690
[2025-06-29 06:34:53] 2025-06-29 13:34:19,936 | INFO     | errors: (none)
[2025-06-29 06:34:53] 2025-06-29 13:34:19,936 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-29 06:34:53] 2025-06-29 13:34:19,936 | INFO     | pilot state: finished 
[2025-06-29 06:34:53] 2025-06-29 13:34:19,936 | INFO     | transexitcode: 0
[2025-06-29 06:34:53] 2025-06-29 13:34:19,936 | INFO     | exeerrorcode: 0
[2025-06-29 06:34:53] 2025-06-29 13:34:19,937 | INFO     | exeerrordiag: 
[2025-06-29 06:34:53] 2025-06-29 13:34:19,937 | INFO     | exitcode: 0
[2025-06-29 06:34:53] 2025-06-29 13:34:19,937 | INFO     | exitmsg: OK
[2025-06-29 06:34:53] 2025-06-29 13:34:19,937 | INFO     | cpuconsumptiontime: 67058 s
[2025-06-29 06:34:53] 2025-06-29 13:34:19,937 | INFO     | nevents: 400
[2025-06-29 06:34:53] 2025-06-29 13:34:19,937 | INFO     | neventsw: 0
[2025-06-29 06:34:53] 2025-06-29 13:34:19,937 | INFO     | pid: 345603
[2025-06-29 06:34:53] 2025-06-29 13:34:19,937 | INFO     | pgrp: 345603
[2025-06-29 06:34:53] 2025-06-29 13:34:19,937 | INFO     | corecount: 4
[2025-06-29 06:34:53] 2025-06-29 13:34:19,937 | INFO     | event service: False
[2025-06-29 06:34:53] 2025-06-29 13:34:19,937 | INFO     | sizes: {0: 2366508, 1: 2366707, 8: 2366969, 11: 2366997, 17263: 2399292, 17268: 2408306, 17269: 2408490, 17278: 2408684}
[2025-06-29 06:34:53] 2025-06-29 13:34:19,937 | INFO     | --------------------------------------------------
[2025-06-29 06:34:53] 2025-06-29 13:34:19,937 | INFO     | 
[2025-06-29 06:34:53] 2025-06-29 13:34:19,937 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/34
[2025-06-29 06:34:53] 2025-06-29 13:34:19,978 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-29 06:34:53] 2025-06-29 13:34:19,979 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-29 06:34:53] 2025-06-29 13:34:19,979 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-29 06:34:53] 2025-06-29 13:34:19,979 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-29 06:34:53] 2025-06-29 13:34:19,979 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-29 06:34:53] 2025-06-29 13:34:19,979 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-29 06:34:53] 2025-06-29 13:34:19,980 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-29 06:34:53] 2025-06-29 13:34:19,980 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-29 06:34:53] 2025-06-29 13:34:19,980 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-29 06:34:53] 2025-06-29 13:34:19,980 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-29 06:34:53] 2025-06-29 13:34:19,980 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-29 06:34:53] 2025-06-29 13:34:19,980 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-29 06:34:53] 2025-06-29 13:34:19,980 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-29 06:34:53] 2025-06-29 13:34:19,980 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-29 06:34:53] 2025-06-29 13:34:19,980 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-29 06:34:53] 2025-06-29 13:34:19,981 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-29 06:34:53] 2025-06-29 13:34:19,981 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-29 06:34:53] 2025-06-29 13:34:19,981 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-29 06:34:53] 2025-06-29 13:34:19,981 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-29 06:34:53] 2025-06-29 13:34:19,981 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-29 06:34:53] 2025-06-29 13:34:19,981 | INFO     | job 6712495944 has completed (purged errors)
[2025-06-29 06:34:53] 2025-06-29 13:34:19,981 | INFO     | overall cleanup function is called
[2025-06-29 06:34:53] 2025-06-29 13:34:20,522 | INFO     | PID=335862 has CPU usage=16.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-29 06:34:53] 2025-06-29 13:34:20,522 | INFO     | .. there are 16 such processes running
[2025-06-29 06:34:53] 2025-06-29 13:34:20,992 | INFO     | --- collectZombieJob: --- 10, [345603]
[2025-06-29 06:34:53] 2025-06-29 13:34:20,993 | INFO     | zombie collector waiting for pid 345603
[2025-06-29 06:34:53] 2025-06-29 13:34:20,993 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-29 06:34:53] 2025-06-29 13:34:20,993 | INFO     | collected zombie processes
[2025-06-29 06:34:53] 2025-06-29 13:34:20,993 | INFO     | will attempt to kill all subprocesses of pid=345603
[2025-06-29 06:34:53] 2025-06-29 13:34:21,553 | INFO     | process IDs to be killed: [345603] (in reverse order)
[2025-06-29 06:34:53] 2025-06-29 13:34:21,725 | WARNING  | found no corresponding commands to process id(s)
[2025-06-29 06:34:53] 2025-06-29 13:34:21,725 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-29 06:34:53] 2025-06-29 13:34:21,742 | INFO     | did not find any defunct processes belonging to 345603
[2025-06-29 06:34:53] 2025-06-29 13:34:21,757 | INFO     | did not find any defunct processes belonging to 345603
[2025-06-29 06:34:53] 2025-06-29 13:34:21,757 | INFO     | ready for new job
[2025-06-29 06:34:53] 2025-06-29 13:34:21,757 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-29 06:34:53] 2025-06-29 13:34:21,760 | INFO     | ***************************************
[2025-06-29 06:34:53] 2025-06-29 13:34:21,760 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-06-29 06:34:53] 2025-06-29 13:34:21,760 | INFO     | ***************************************
[2025-06-29 06:34:53] 2025-06-29 13:34:21,760 | INFO     | 
[2025-06-29 06:34:53] 2025-06-29 13:34:21,769 | INFO     | architecture information:
[2025-06-29 06:34:53] 2025-06-29 13:34:21,769 | INFO     | executing command: cat /etc/os-release
[2025-06-29 06:34:53] 2025-06-29 13:34:21,787 | INFO     | cat /etc/os-release:
[2025-06-29 06:34:53] NAME="CentOS Linux"
[2025-06-29 06:34:53] VERSION="7 (Core)"
[2025-06-29 06:34:53] ID="centos"
[2025-06-29 06:34:53] ID_LIKE="rhel fedora"
[2025-06-29 06:34:53] VERSION_ID="7"
[2025-06-29 06:34:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-29 06:34:53] ANSI_COLOR="0;31"
[2025-06-29 06:34:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-29 06:34:53] HOME_URL="https://www.centos.org/"
[2025-06-29 06:34:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-29 06:34:53] 
[2025-06-29 06:34:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-29 06:34:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-29 06:34:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-29 06:34:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-29 06:34:53] 
[2025-06-29 06:34:53] 2025-06-29 13:34:21,788 | INFO     | ***************************************
[2025-06-29 06:34:53] 2025-06-29 13:34:22,291 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/34
[2025-06-29 06:34:53] 2025-06-29 13:34:22,320 | INFO     | sufficient remaining disk space (254779850752 B)
[2025-06-29 06:34:53] 2025-06-29 13:34:22,320 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-29 06:34:53] 2025-06-29 13:34:22,320 | INFO     | current server update state: UPDATING_FINAL
[2025-06-29 06:34:53] 2025-06-29 13:34:22,320 | INFO     | update_server=False
[2025-06-29 06:34:53] 2025-06-29 13:34:22,321 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-29 06:34:53] 2025-06-29 13:34:22,322 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-29 06:34:53] 2025-06-29 13:34:22,689 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-29 06:34:53] 2025-06-29 13:34:22,690 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-29 06:34:53] 2025-06-29 13:34:22,690 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-29 06:34:53] 2025-06-29 13:34:22,690 | INFO     | will abort loop
[2025-06-29 06:34:53] 2025-06-29 13:34:23,244 | INFO     | all data control threads have been joined
[2025-06-29 06:34:53] 2025-06-29 13:34:23,326 | INFO     | [job] retrieve thread has finished
[2025-06-29 06:34:53] 2025-06-29 13:34:23,476 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-29 06:34:53] 2025-06-29 13:34:23,634 | INFO     | all job control threads have been joined
[2025-06-29 06:34:53] 2025-06-29 13:34:23,637 | INFO     | all payload control threads have been joined
[2025-06-29 06:34:53] 2025-06-29 13:34:23,696 | INFO     | [job] job monitor thread has finished
[2025-06-29 06:34:53] 2025-06-29 13:34:23,986 | INFO     | [job] validate thread has finished
[2025-06-29 06:34:53] 2025-06-29 13:34:24,094 | INFO     | [payload] validate_post thread has finished
[2025-06-29 06:34:53] 2025-06-29 13:34:24,250 | INFO     | [data] control thread has finished
[2025-06-29 06:34:53] 2025-06-29 13:34:24,303 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-29 06:34:53] 2025-06-29 13:34:24,316 | INFO     | [payload] execute_payloads thread has finished
[2025-06-29 06:34:53] 2025-06-29 13:34:24,443 | INFO     | [payload] validate_pre thread has finished
[2025-06-29 06:34:53] 2025-06-29 13:34:24,486 | INFO     | [data] copytool_in thread has finished
[2025-06-29 06:34:53] 2025-06-29 13:34:24,558 | INFO     | [job] create_data_payload thread has finished
[2025-06-29 06:34:53] 2025-06-29 13:34:24,640 | INFO     | [job] control thread has finished
[2025-06-29 06:34:53] 2025-06-29 13:34:24,645 | INFO     | [payload] control thread has finished
[2025-06-29 06:34:53] 2025-06-29 13:34:24,845 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-29 06:34:53] 2025-06-29 13:34:24,880 | INFO     | [payload] failed_post thread has finished
[2025-06-29 06:34:53] 2025-06-29 13:34:25,484 | INFO     | [data] copytool_out thread has finished
[2025-06-29 06:34:53] 2025-06-29 13:34:25,851 | INFO     | [job] queue monitor thread has finished
[2025-06-29 06:34:53] 2025-06-29 13:34:26,326 | INFO     | [data] queue_monitor thread has finished
[2025-06-29 06:34:53] 2025-06-29 13:34:28,347 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 136477064701760)>', '<ExcThread(monitor, started 136476360677120)>']
[2025-06-29 06:34:53] 2025-06-29 13:34:33,371 | INFO     | all workflow threads have been joined
[2025-06-29 06:34:53] 2025-06-29 13:34:33,372 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-29 06:34:53] 2025-06-29 13:34:33,372 | INFO     | traces error code: 0
[2025-06-29 06:34:53] 2025-06-29 13:34:33,373 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-29 06:34:53] 2025-06-29 13:34:53,270 | INFO     | PID=335862 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-29 06:34:53] 2025-06-29 13:34:53,271 | INFO     | .. there are 16 such processes running
[2025-06-29 06:34:53] 2025-06-29 13:34:53,272 | INFO     | found 0 job(s) in 20 queues
[2025-06-29 06:34:53] 2025-06-29 13:34:53,272 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-29 06:34:53] 2025-06-29 13:34:53,272 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-29 06:34:53] 2025-06-29 13:34:53,272 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-29 06:34:53] 2025-06-29 13:34:53,272 | CRITICAL | thread 'MainThread' is not alive
[2025-06-29 06:34:53] 2025-06-29 13:34:53,272 | INFO     | [monitor] control thread has ended
[2025-06-29 06:34:53] 2025-06-29 13:34:53,455 [wrapper] ==== pilot stdout END ====
[2025-06-29 06:34:53] 2025-06-29 13:34:53,459 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-29 06:34:53] 2025-06-29 13:34:53,464 [wrapper] pilotpid: 335862
[2025-06-29 06:34:53] 2025-06-29 13:34:53,469 [wrapper] Pilot exit status: 0
[2025-06-29 06:34:53] 2025-06-29 13:34:53,487 [wrapper] pandaids: 6712495944
[2025-06-29 06:34:53] 2025-06-29 13:34:53,597 [wrapper] cleanup supervisor_pilot 1057236 335863
[2025-06-29 06:34:53] 2025-06-29 13:34:53,608 [wrapper] Test setup, not cleaning
[2025-06-29 06:34:53] 2025-06-29 13:34:53,613 [wrapper] apfmon messages muted
[2025-06-29 06:34:53] 2025-06-29 13:34:53,620 [wrapper] ==== wrapper stdout END ====
[2025-06-29 06:34:53] 2025-06-29 13:34:53,623 [wrapper] ==== wrapper stderr END ====
[2025-06-29 06:34:53]  *** Error codes and diagnostics ***
[2025-06-29 06:34:53]     "exeErrorCode": 0,
[2025-06-29 06:34:53]     "exeErrorDiag": "",
[2025-06-29 06:34:53]     "pilotErrorCode": 0,
[2025-06-29 06:34:53]     "pilotErrorDiag": "",
[2025-06-29 06:34:53]  *** Listing of results directory ***
[2025-06-29 06:34:53] total 516272
[2025-06-29 06:34:53] -rw-r--r-- 1 boinc boinc    530466 Jun 28 18:29 pilot3.tar.gz
[2025-06-29 06:34:53] -rw-r--r-- 1 boinc boinc      5112 Jun 28 18:53 queuedata.json
[2025-06-29 06:34:53] -rwx------ 1 boinc boinc     36245 Jun 28 18:53 runpilot2-wrapper.sh
[2025-06-29 06:34:53] -rw-r--r-- 1 boinc boinc       100 Jun 29 01:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-29 06:34:53] -rwxr-xr-x 1 boinc boinc      7986 Jun 29 01:45 run_atlas
[2025-06-29 06:34:53] -rw-r--r-- 1 boinc boinc       105 Jun 29 01:45 job.xml
[2025-06-29 06:34:53] -rw-r--r-- 2 boinc boinc 283432650 Jun 29 01:45 EVNT.45399687._000003.pool.root.1
[2025-06-29 06:34:53] -rw-r--r-- 2 boinc boinc     15095 Jun 29 01:45 start_atlas.sh
[2025-06-29 06:34:53] drwxrwx--x 2 boinc boinc      4096 Jun 29 01:45 shared
[2025-06-29 06:34:53] -rw-r--r-- 2 boinc boinc    542889 Jun 29 01:45 input.tar.gz
[2025-06-29 06:34:53] -rw-r--r-- 1 boinc boinc         0 Jun 29 01:45 boinc_setup_complete
[2025-06-29 06:34:53] -rw-r--r-- 1 boinc boinc     10263 Jun 29 01:45 init_data.xml
[2025-06-29 06:34:53] -rw-r--r-- 1 boinc boinc         0 Jun 29 01:45 boinc_lockfile
[2025-06-29 06:34:53] -rw-r--r-- 1 boinc boinc      2617 Jun 29 01:45 pandaJob.out
[2025-06-29 06:34:53] -rw------- 1 boinc boinc    970676 Jun 29 01:45 agis_schedconf.cvmfs.json
[2025-06-29 06:34:53] drwx------ 4 boinc boinc      4096 Jun 29 01:46 pilot3
[2025-06-29 06:34:53] -rw------- 1 boinc boinc 237478703 Jun 29 06:33 HITS.45399690._000074.pool.root.1
[2025-06-29 06:34:53] -rw-r--r-- 1 boinc boinc       530 Jun 29 06:33 boinc_task_state.xml
[2025-06-29 06:34:53] -rw------- 1 boinc boinc      1025 Jun 29 06:34 memory_monitor_summary.json
[2025-06-29 06:34:53] -rw------- 1 boinc boinc   1574086 Jun 29 06:34 agis_ddmendpoints.agis.ALL.json
[2025-06-29 06:34:53] -rw------- 1 boinc boinc    381137 Jun 29 06:34 log.45399690._000074.job.log.tgz.1
[2025-06-29 06:34:53] -rw------- 1 boinc boinc      7710 Jun 29 06:34 heartbeat.json
[2025-06-29 06:34:53] -rw-r--r-- 1 boinc boinc      8192 Jun 29 06:34 boinc_mmap_file
[2025-06-29 06:34:53] -rw-r--r-- 1 boinc boinc        28 Jun 29 06:34 wrapper_checkpoint.txt
[2025-06-29 06:34:53] -rw------- 1 boinc boinc       892 Jun 29 06:34 pilotlog.txt
[2025-06-29 06:34:53] -rw------- 1 boinc boinc        95 Jun 29 06:34 pilot_heartbeat.json
[2025-06-29 06:34:53] -rw------- 1 boinc boinc   1566626 Jun 29 06:34 log.45399690._000074.job.log.1
[2025-06-29 06:34:53] -rw------- 1 boinc boinc       357 Jun 29 06:34 output.list
[2025-06-29 06:34:53] -rw-r--r-- 1 boinc boinc       620 Jun 29 06:34 runtime_log
[2025-06-29 06:34:53] -rw------- 1 boinc boinc   1966080 Jun 29 06:34 result.tar.gz
[2025-06-29 06:34:53] -rw------- 1 boinc boinc       657 Jun 29 06:34 VdrKDmzPwp7n9Rq4apOajLDm4fhM0noT9bVof3QYDm5okKDmSm7GYo.diag
[2025-06-29 06:34:53] -rw-r--r-- 1 boinc boinc      8757 Jun 29 06:34 runtime_log.err
[2025-06-29 06:34:53] -rw-r--r-- 1 boinc boinc     21330 Jun 29 06:34 stderr.txt
[2025-06-29 06:34:53] HITS file was successfully produced:
[2025-06-29 06:34:53] -rw------- 1 boinc boinc 237478703 Jun 29 06:33 shared/HITS.pool.root.1
[2025-06-29 06:34:53]  *** Contents of shared directory: ***
[2025-06-29 06:34:53] total 511184
[2025-06-29 06:34:53] -rw-r--r-- 2 boinc boinc 283432650 Jun 29 01:45 ATLAS.root_0
[2025-06-29 06:34:53] -rw-r--r-- 2 boinc boinc     15095 Jun 29 01:45 start_atlas.sh
[2025-06-29 06:34:53] -rw-r--r-- 2 boinc boinc    542889 Jun 29 01:45 input.tar.gz
[2025-06-29 06:34:53] -rw------- 1 boinc boinc 237478703 Jun 29 06:33 HITS.pool.root.1
[2025-06-29 06:34:53] -rw------- 1 boinc boinc   1966080 Jun 29 06:34 result.tar.gz
06:34:55 (330387): run_atlas exited; CPU time 68087.440195
06:34:55 (330387): called boinc_finish(0)

</stderr_txt>
]]>

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