Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:35:36 (13431): wrapper (7.7.26015): starting
10:35:36 (13431): wrapper: running run_atlas (--nthreads 8)
[2025-06-28 10:35:36] Arguments: --nthreads 8
[2025-06-28 10:35:36] Threads: 8
[2025-06-28 10:35:36] Checking for CVMFS
[2025-06-28 10:35:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-28 10:35:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-28 10:35:37] Running cvmfs_config stat atlas.cern.ch
[2025-06-28 10:35:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-28 10:35:37] 2.11.2.0 3063 67554 127140 147674 2 62 24165029 25165825 364 130560 0 36448884 99.777 41799124 3348 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-28 10:35:37] CVMFS is ok
[2025-06-28 10:35:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-28 10:35:37] Checking for apptainer binary...
[2025-06-28 10:35:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-28 10:35:37] Running /usr/bin/apptainer --version
[2025-06-28 10:35:37] apptainer version 1.3.2-1.el7
[2025-06-28 10:35:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-28 10:35:37] cg-vwn462.simple-grid.lan
[2025-06-28 10:35:37] apptainer works
[2025-06-28 10:35:37] Set ATHENA_PROC_NUMBER=8
[2025-06-28 10:35:37] Set ATHENA_CORE_NUMBER=8
[2025-06-28 10:35:37] Starting ATLAS job with PandaID=6711740459
[2025-06-28 10:35:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/21 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-28 11:51:44]  *** The last 200 lines of the pilot log: ***
[2025-06-28 11:51:44]  protocol_id=None
[2025-06-28 11:51:44]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-28 11:51:44]  replicas=None
[2025-06-28 11:51:44]  scope=mc23_13p6TeV
[2025-06-28 11:51:44]  status=None
[2025-06-28 11:51:44]  status_code=0
[2025-06-28 11:51:44]  storage_token=
[2025-06-28 11:51:44]  surl=/var/lib/boinc/slots/21/PanDA_Pilot-6711740459/log.45389343._000112.job.log.tgz.1
[2025-06-28 11:51:44]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/dd/8d/log.45389343._000112.job.log.tgz.1
[2025-06-28 11:51:44]  workdir=None
[2025-06-28 11:51:44] ]
[2025-06-28 11:51:44] 2025-06-28 09:51:05,640 | INFO     | transferring file log.45389343._000112.job.log.tgz.1 from /var/lib/boinc/slots/21/PanDA_Pilot-6711740459/log.45389343._000112.job.log.tgz.1 to /var/lib/boinc/slots
[2025-06-28 11:51:44] 2025-06-28 09:51:05,640 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/21/PanDA_Pilot-6711740459/log.45389343._000112.job.log.tgz.1 /var/lib/boinc/slots/21/log.45389343._000112.j
[2025-06-28 11:51:44] 2025-06-28 09:51:05,652 | INFO     | adding to output.list: log.45389343._000112.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/dd/8d/log.45389343._000112.job.log.tg
[2025-06-28 11:51:44] 2025-06-28 09:51:05,652 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-28 11:51:44] 2025-06-28 09:51:05,653 | INFO     | summary of transferred files:
[2025-06-28 11:51:44] 2025-06-28 09:51:05,653 | INFO     |  -- lfn=log.45389343._000112.job.log.tgz.1, status_code=0, status=transferred
[2025-06-28 11:51:44] 2025-06-28 09:51:05,653 | INFO     | stage-out finished correctly
[2025-06-28 11:51:44] 2025-06-28 09:51:05,921 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-28 11:51:44] 2025-06-28 09:51:07,065 | WARNING  | process 23581 can no longer be monitored (due to stat problems) - aborting
[2025-06-28 11:51:44] 2025-06-28 09:51:07,065 | INFO     | using path: /var/lib/boinc/slots/21/PanDA_Pilot-6711740459/memory_monitor_summary.json (trf name=prmon)
[2025-06-28 11:51:44] 2025-06-28 09:51:07,092 | INFO     | number of running child processes to parent process 23581: 1
[2025-06-28 11:51:44] 2025-06-28 09:51:07,092 | INFO     | maximum number of monitored processes: 6
[2025-06-28 11:51:44] 2025-06-28 09:51:08,013 | INFO     | job 6711740459 has state=finished
[2025-06-28 11:51:44] 2025-06-28 09:51:08,013 | INFO     | preparing for final server update for job 6711740459 in state='finished'
[2025-06-28 11:51:44] 2025-06-28 09:51:08,576 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-28 11:51:44] 2025-06-28 09:51:08,576 | INFO     | this job has now completed (state=finished)
[2025-06-28 11:51:44] 2025-06-28 09:51:08,576 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-28 11:51:44] 2025-06-28 09:51:08,576 | INFO     | log transfer has been attempted: DONE
[2025-06-28 11:51:44] 2025-06-28 09:51:08,576 | INFO     | job 6711740459 has finished - writing final server update
[2025-06-28 11:51:44] 2025-06-28 09:51:08,576 | INFO     | total number of processed events: 400 (read)
[2025-06-28 11:51:44] 2025-06-28 09:51:08,577 | INFO     | executing command: lscpu
[2025-06-28 11:51:44] 2025-06-28 09:51:08,588 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-28 11:51:44] 2025-06-28 09:51:09,595 | INFO     | monitor loop #313: job 0:6711740459 is in state 'finished'
[2025-06-28 11:51:44] 2025-06-28 09:51:09,595 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-28 11:51:44] 2025-06-28 09:51:11,432 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-28 11:51:44] 2025-06-28 09:51:11,432 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2250.0
[2025-06-28 11:51:44] 2025-06-28 09:51:11,433 | INFO     | using path: /var/lib/boinc/slots/21/PanDA_Pilot-6711740459/memory_monitor_summary.json (trf name=prmon)
[2025-06-28 11:51:44] 2025-06-28 09:51:11,434 | INFO     | extracted standard info from prmon json
[2025-06-28 11:51:44] 2025-06-28 09:51:11,434 | INFO     | extracted standard memory fields from prmon json
[2025-06-28 11:51:44] 2025-06-28 09:51:11,434 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-28 11:51:44] 2025-06-28 09:51:11,434 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-28 11:51:44] 2025-06-28 09:51:11,434 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-28 11:51:44] 2025-06-28 09:51:11,435 | INFO     | fitting pss+swap vs Time
[2025-06-28 11:51:44] 2025-06-28 09:51:11,435 | INFO     | sum of square deviations: 93240818.0
[2025-06-28 11:51:44] 2025-06-28 09:51:11,435 | INFO     | sum of deviations: -9285453062.0
[2025-06-28 11:51:44] 2025-06-28 09:51:11,435 | INFO     | mean x: 1751102083.0
[2025-06-28 11:51:44] 2025-06-28 09:51:11,436 | INFO     | mean y: 2721435.1641791044
[2025-06-28 11:51:44] 2025-06-28 09:51:11,436 | INFO     | -- intersect: 174387465662.38586
[2025-06-28 11:51:44] 2025-06-28 09:51:11,436 | INFO     | intersect: 174387465662.38586
[2025-06-28 11:51:44] 2025-06-28 09:51:11,436 | INFO     | chi2: 0.05890518059961971
[2025-06-28 11:51:44] 2025-06-28 09:51:11,436 | INFO     | -- intersect: 174387465662.38586
[2025-06-28 11:51:44] 2025-06-28 09:51:11,436 | INFO     | current memory leak: -99.59 B/s (using 67 data points, chi2=0.06)
[2025-06-28 11:51:44] 2025-06-28 09:51:11,436 | INFO     | could have reported an average CPU frequency of 2250 MHz (6 samples)
[2025-06-28 11:51:44] 2025-06-28 09:51:11,436 | INFO     | ..............................
[2025-06-28 11:51:44] 2025-06-28 09:51:11,436 | INFO     | . Timing measurements:
[2025-06-28 11:51:44] 2025-06-28 09:51:11,436 | INFO     | . get job = 0 s
[2025-06-28 11:51:44] 2025-06-28 09:51:11,436 | INFO     | . initial setup = 1 s
[2025-06-28 11:51:44] 2025-06-28 09:51:11,436 | INFO     | . payload setup = 4 s
[2025-06-28 11:51:44] 2025-06-28 09:51:11,436 | INFO     | . stage-in = 0 s
[2025-06-28 11:51:44] 2025-06-28 09:51:11,436 | INFO     | . payload execution = 4500 s
[2025-06-28 11:51:44] 2025-06-28 09:51:11,436 | INFO     | . stage-out = 0 s
[2025-06-28 11:51:44] 2025-06-28 09:51:11,436 | INFO     | . log creation = 0 s
[2025-06-28 11:51:44] 2025-06-28 09:51:11,436 | INFO     | ..............................
[2025-06-28 11:51:44] 2025-06-28 09:51:11,491 | INFO     | 
[2025-06-28 11:51:44] 2025-06-28 09:51:11,492 | INFO     | job summary report
[2025-06-28 11:51:44] 2025-06-28 09:51:11,492 | INFO     | --------------------------------------------------
[2025-06-28 11:51:44] 2025-06-28 09:51:11,492 | INFO     | PanDA job id: 6711740459
[2025-06-28 11:51:44] 2025-06-28 09:51:11,492 | INFO     | task id: 45389343
[2025-06-28 11:51:44] 2025-06-28 09:51:11,492 | INFO     | errors: (none)
[2025-06-28 11:51:44] 2025-06-28 09:51:11,492 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-28 11:51:44] 2025-06-28 09:51:11,492 | INFO     | pilot state: finished 
[2025-06-28 11:51:44] 2025-06-28 09:51:11,492 | INFO     | transexitcode: 0
[2025-06-28 11:51:44] 2025-06-28 09:51:11,492 | INFO     | exeerrorcode: 0
[2025-06-28 11:51:44] 2025-06-28 09:51:11,492 | INFO     | exeerrordiag: 
[2025-06-28 11:51:44] 2025-06-28 09:51:11,492 | INFO     | exitcode: 0
[2025-06-28 11:51:44] 2025-06-28 09:51:11,492 | INFO     | exitmsg: OK
[2025-06-28 11:51:44] 2025-06-28 09:51:11,492 | INFO     | cpuconsumptiontime: 29803 s
[2025-06-28 11:51:44] 2025-06-28 09:51:11,492 | INFO     | nevents: 400
[2025-06-28 11:51:44] 2025-06-28 09:51:11,492 | INFO     | neventsw: 0
[2025-06-28 11:51:44] 2025-06-28 09:51:11,492 | INFO     | pid: 23581
[2025-06-28 11:51:44] 2025-06-28 09:51:11,492 | INFO     | pgrp: 23581
[2025-06-28 11:51:44] 2025-06-28 09:51:11,492 | INFO     | corecount: 8
[2025-06-28 11:51:44] 2025-06-28 09:51:11,492 | INFO     | event service: False
[2025-06-28 11:51:44] 2025-06-28 09:51:11,492 | INFO     | sizes: {0: 2366469, 1: 2366724, 3: 2366986, 11: 2367014, 4507: 2393099, 4508: 2402283, 4514: 2402421}
[2025-06-28 11:51:44] 2025-06-28 09:51:11,492 | INFO     | --------------------------------------------------
[2025-06-28 11:51:44] 2025-06-28 09:51:11,492 | INFO     | 
[2025-06-28 11:51:44] 2025-06-28 09:51:11,493 | INFO     | executing command: ls -lF /var/lib/boinc/slots/21
[2025-06-28 11:51:44] 2025-06-28 09:51:11,505 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-28 11:51:44] 2025-06-28 09:51:11,505 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-28 11:51:44] 2025-06-28 09:51:11,505 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-28 11:51:44] 2025-06-28 09:51:11,505 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-28 11:51:44] 2025-06-28 09:51:11,505 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-28 11:51:44] 2025-06-28 09:51:11,505 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-28 11:51:44] 2025-06-28 09:51:11,506 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-28 11:51:44] 2025-06-28 09:51:11,506 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-28 11:51:44] 2025-06-28 09:51:11,506 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-28 11:51:44] 2025-06-28 09:51:11,506 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-28 11:51:44] 2025-06-28 09:51:11,506 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-28 11:51:44] 2025-06-28 09:51:11,506 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-28 11:51:44] 2025-06-28 09:51:11,506 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-28 11:51:44] 2025-06-28 09:51:11,506 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-28 11:51:44] 2025-06-28 09:51:11,506 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-28 11:51:44] 2025-06-28 09:51:11,506 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-28 11:51:44] 2025-06-28 09:51:11,506 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-28 11:51:44] 2025-06-28 09:51:11,506 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-28 11:51:44] 2025-06-28 09:51:11,506 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-28 11:51:44] 2025-06-28 09:51:11,506 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-28 11:51:44] 2025-06-28 09:51:11,506 | INFO     | job 6711740459 has completed (purged errors)
[2025-06-28 11:51:44] 2025-06-28 09:51:11,506 | INFO     | overall cleanup function is called
[2025-06-28 11:51:44] 2025-06-28 09:51:12,513 | INFO     | --- collectZombieJob: --- 10, [23581]
[2025-06-28 11:51:44] 2025-06-28 09:51:12,513 | INFO     | zombie collector waiting for pid 23581
[2025-06-28 11:51:44] 2025-06-28 09:51:12,513 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-28 11:51:44] 2025-06-28 09:51:12,513 | INFO     | collected zombie processes
[2025-06-28 11:51:44] 2025-06-28 09:51:12,513 | INFO     | will attempt to kill all subprocesses of pid=23581
[2025-06-28 11:51:44] 2025-06-28 09:51:12,541 | INFO     | process IDs to be killed: [23581] (in reverse order)
[2025-06-28 11:51:44] 2025-06-28 09:51:12,565 | WARNING  | found no corresponding commands to process id(s)
[2025-06-28 11:51:44] 2025-06-28 09:51:12,565 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-28 11:51:44] 2025-06-28 09:51:12,566 | INFO     | did not find any defunct processes belonging to 23581
[2025-06-28 11:51:44] 2025-06-28 09:51:12,567 | INFO     | did not find any defunct processes belonging to 23581
[2025-06-28 11:51:44] 2025-06-28 09:51:12,567 | INFO     | ready for new job
[2025-06-28 11:51:44] 2025-06-28 09:51:12,567 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-28 11:51:44] 2025-06-28 09:51:12,568 | INFO     | ***************************************
[2025-06-28 11:51:44] 2025-06-28 09:51:12,568 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-06-28 11:51:44] 2025-06-28 09:51:12,568 | INFO     | ***************************************
[2025-06-28 11:51:44] 2025-06-28 09:51:12,568 | INFO     | 
[2025-06-28 11:51:44] 2025-06-28 09:51:12,569 | INFO     | pilot is running in a VM
[2025-06-28 11:51:44] 2025-06-28 09:51:12,569 | INFO     | architecture information:
[2025-06-28 11:51:44] 2025-06-28 09:51:12,569 | INFO     | executing command: cat /etc/os-release
[2025-06-28 11:51:44] 2025-06-28 09:51:12,579 | INFO     | cat /etc/os-release:
[2025-06-28 11:51:44] NAME="CentOS Linux"
[2025-06-28 11:51:44] VERSION="7 (Core)"
[2025-06-28 11:51:44] ID="centos"
[2025-06-28 11:51:44] ID_LIKE="rhel fedora"
[2025-06-28 11:51:44] VERSION_ID="7"
[2025-06-28 11:51:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-28 11:51:44] ANSI_COLOR="0;31"
[2025-06-28 11:51:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-28 11:51:44] HOME_URL="https://www.centos.org/"
[2025-06-28 11:51:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-28 11:51:44] 
[2025-06-28 11:51:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-28 11:51:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-28 11:51:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-28 11:51:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-28 11:51:44] 
[2025-06-28 11:51:44] 2025-06-28 09:51:12,579 | INFO     | ***************************************
[2025-06-28 11:51:44] 2025-06-28 09:51:13,082 | INFO     | executing command: df -mP /var/lib/boinc/slots/21
[2025-06-28 11:51:44] 2025-06-28 09:51:13,093 | INFO     | sufficient remaining disk space (495184773120 B)
[2025-06-28 11:51:44] 2025-06-28 09:51:13,093 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-28 11:51:44] 2025-06-28 09:51:13,094 | INFO     | current server update state: UPDATING_FINAL
[2025-06-28 11:51:44] 2025-06-28 09:51:13,094 | INFO     | update_server=False
[2025-06-28 11:51:44] 2025-06-28 09:51:13,094 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-28 11:51:44] 2025-06-28 09:51:13,094 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-28 11:51:44] 2025-06-28 09:51:13,103 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-28 11:51:44] 2025-06-28 09:51:13,103 | INFO     | aborting loop
[2025-06-28 11:51:44] 2025-06-28 09:51:13,184 | INFO     | all data control threads have been joined
[2025-06-28 11:51:44] 2025-06-28 09:51:13,713 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-28 11:51:44] 2025-06-28 09:51:14,099 | INFO     | [job] retrieve thread has finished
[2025-06-28 11:51:44] 2025-06-28 09:51:14,099 | INFO     | [job] queue monitor thread has finished
[2025-06-28 11:51:44] 2025-06-28 09:51:14,108 | INFO     | [job] job monitor thread has finished
[2025-06-28 11:51:44] 2025-06-28 09:51:14,125 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-28 11:51:44] 2025-06-28 09:51:14,179 | INFO     | all job control threads have been joined
[2025-06-28 11:51:44] 2025-06-28 09:51:14,189 | INFO     | [data] control thread has finished
[2025-06-28 11:51:44] 2025-06-28 09:51:14,228 | INFO     | [payload] failed_post thread has finished
[2025-06-28 11:51:44] 2025-06-28 09:51:14,503 | INFO     | all payload control threads have been joined
[2025-06-28 11:51:44] 2025-06-28 09:51:14,653 | INFO     | [payload] validate_pre thread has finished
[2025-06-28 11:51:44] 2025-06-28 09:51:14,809 | INFO     | [payload] execute_payloads thread has finished
[2025-06-28 11:51:44] 2025-06-28 09:51:14,825 | INFO     | [data] copytool_in thread has finished
[2025-06-28 11:51:44] 2025-06-28 09:51:15,184 | INFO     | [job] control thread has finished
[2025-06-28 11:51:44] 2025-06-28 09:51:15,335 | INFO     | [job] validate thread has finished
[2025-06-28 11:51:44] 2025-06-28 09:51:15,466 | INFO     | [payload] validate_post thread has finished
[2025-06-28 11:51:44] 2025-06-28 09:51:15,508 | INFO     | [payload] control thread has finished
[2025-06-28 11:51:44] 2025-06-28 09:51:15,599 | INFO     | [job] create_data_payload thread has finished
[2025-06-28 11:51:44] 2025-06-28 09:51:15,719 | INFO     | [data] copytool_out thread has finished
[2025-06-28 11:51:44] 2025-06-28 09:51:16,490 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-28 11:51:44] 2025-06-28 09:51:20,496 | INFO     | [data] queue_monitor thread has finished
[2025-06-28 11:51:44] 2025-06-28 09:51:22,335 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139833352984384)>', '<ExcThread(monitor, started 139832902797056)>']
[2025-06-28 11:51:44] 2025-06-28 09:51:27,360 | INFO     | all workflow threads have been joined
[2025-06-28 11:51:44] 2025-06-28 09:51:27,360 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-28 11:51:44] 2025-06-28 09:51:27,360 | INFO     | traces error code: 0
[2025-06-28 11:51:44] 2025-06-28 09:51:27,360 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-28 11:51:44] 2025-06-28 09:51:43,847 | INFO     | PID=17077 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-28 11:51:44] 2025-06-28 09:51:43,847 | INFO     | .. there are 2 such processes running
[2025-06-28 11:51:44] 2025-06-28 09:51:43,848 | INFO     | found 0 job(s) in 20 queues
[2025-06-28 11:51:44] 2025-06-28 09:51:43,848 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-28 11:51:44] 2025-06-28 09:51:43,848 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-28 11:51:44] 2025-06-28 09:51:43,848 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-28 11:51:44] 2025-06-28 09:51:43,848 | CRITICAL | thread 'MainThread' is not alive
[2025-06-28 11:51:44] 2025-06-28 09:51:43,848 | INFO     | [monitor] control thread has ended
[2025-06-28 11:51:44] 2025-06-28 09:51:43,919 [wrapper] ==== pilot stdout END ====
[2025-06-28 11:51:44] 2025-06-28 09:51:43,921 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-28 11:51:44] 2025-06-28 09:51:43,923 [wrapper] pilotpid: 17077
[2025-06-28 11:51:44] 2025-06-28 09:51:43,924 [wrapper] Pilot exit status: 0
[2025-06-28 11:51:44] 2025-06-28 09:51:43,932 [wrapper] pandaids: 6711740459
[2025-06-28 11:51:44] 2025-06-28 09:51:43,948 [wrapper] cleanup supervisor_pilot  2811 17078
[2025-06-28 11:51:44] 2025-06-28 09:51:43,951 [wrapper] Test setup, not cleaning
[2025-06-28 11:51:44] 2025-06-28 09:51:43,953 [wrapper] apfmon messages muted
[2025-06-28 11:51:44] 2025-06-28 09:51:43,955 [wrapper] ==== wrapper stdout END ====
[2025-06-28 11:51:44] 2025-06-28 09:51:43,956 [wrapper] ==== wrapper stderr END ====
[2025-06-28 11:51:44]  *** Error codes and diagnostics ***
[2025-06-28 11:51:44]     "exeErrorCode": 0,
[2025-06-28 11:51:44]     "exeErrorDiag": "",
[2025-06-28 11:51:44]     "pilotErrorCode": 0,
[2025-06-28 11:51:44]     "pilotErrorDiag": "",
[2025-06-28 11:51:44]  *** Listing of results directory ***
[2025-06-28 11:51:44] total 519688
[2025-06-28 11:51:44] -rw-r--r--. 1 boinc boinc    530466 Jun 28 09:07 pilot3.tar.gz
[2025-06-28 11:51:44] -rwx------. 1 boinc boinc     36245 Jun 28 09:23 runpilot2-wrapper.sh
[2025-06-28 11:51:44] -rw-r--r--. 1 boinc boinc      5112 Jun 28 09:23 queuedata.json
[2025-06-28 11:51:44] -rw-r--r--. 1 boinc boinc       100 Jun 28 10:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-28 11:51:44] -rwxr-xr-x. 1 boinc boinc      7986 Jun 28 10:35 run_atlas
[2025-06-28 11:51:44] -rw-r--r--. 1 boinc boinc       105 Jun 28 10:35 job.xml
[2025-06-28 11:51:44] -rw-r--r--. 2 boinc boinc     15095 Jun 28 10:35 start_atlas.sh
[2025-06-28 11:51:44] drwxrwx--x. 2 boinc boinc        68 Jun 28 10:35 shared
[2025-06-28 11:51:44] -rw-r--r--. 2 boinc boinc    542889 Jun 28 10:35 input.tar.gz
[2025-06-28 11:51:44] -rw-r--r--. 1 boinc boinc      6393 Jun 28 10:35 init_data.xml
[2025-06-28 11:51:44] -rw-r--r--. 2 boinc boinc 293201998 Jun 28 10:35 EVNT.45389341._000005.pool.root.1
[2025-06-28 11:51:44] -rw-r--r--. 1 boinc boinc         0 Jun 28 10:35 boinc_lockfile
[2025-06-28 11:51:44] -rw-r--r--. 1 boinc boinc      2639 Jun 28 10:35 pandaJob.out
[2025-06-28 11:51:44] -rw-------. 1 boinc boinc    970692 Jun 28 10:35 agis_schedconf.cvmfs.json
[2025-06-28 11:51:44] -rw-------. 1 boinc boinc   1574086 Jun 28 10:35 agis_ddmendpoints.agis.ALL.json
[2025-06-28 11:51:44] drwx------. 4 boinc boinc      4096 Jun 28 10:35 pilot3
[2025-06-28 11:51:44] -rw-------. 1 boinc boinc 233671932 Jun 28 11:50 HITS.45389343._000112.pool.root.1
[2025-06-28 11:51:44] -rw-------. 1 boinc boinc      1013 Jun 28 11:51 memory_monitor_summary.json
[2025-06-28 11:51:44] -rw-------. 1 boinc boinc    298199 Jun 28 11:51 log.45389343._000112.job.log.tgz.1
[2025-06-28 11:51:44] -rw-r--r--. 1 boinc boinc       529 Jun 28 11:51 boinc_task_state.xml
[2025-06-28 11:51:44] -rw-------. 1 boinc boinc      7763 Jun 28 11:51 heartbeat.json
[2025-06-28 11:51:44] -rw-r--r--. 1 boinc boinc        27 Jun 28 11:51 wrapper_checkpoint.txt
[2025-06-28 11:51:44] -rw-r--r--. 1 boinc boinc      8192 Jun 28 11:51 boinc_mmap_file
[2025-06-28 11:51:44] -rw-------. 1 boinc boinc        95 Jun 28 11:51 pilot_heartbeat.json
[2025-06-28 11:51:44] -rw-------. 1 boinc boinc       890 Jun 28 11:51 pilotlog.txt
[2025-06-28 11:51:44] -rw-------. 1 boinc boinc    429423 Jun 28 11:51 log.45389343._000112.job.log.1
[2025-06-28 11:51:44] -rw-------. 1 boinc boinc       357 Jun 28 11:51 output.list
[2025-06-28 11:51:44] -rw-r--r--. 1 boinc boinc       620 Jun 28 11:51 runtime_log
[2025-06-28 11:51:44] -rw-------. 1 boinc boinc    747520 Jun 28 11:51 result.tar.gz
[2025-06-28 11:51:44] -rw-------. 1 boinc boinc       651 Jun 28 11:51 zMtNDmS5ep7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7g2KDmj0n1Jm.diag
[2025-06-28 11:51:44] -rw-r--r--. 1 boinc boinc      8673 Jun 28 11:51 runtime_log.err
[2025-06-28 11:51:44] -rw-r--r--. 1 boinc boinc     21425 Jun 28 11:51 stderr.txt
[2025-06-28 11:51:44] HITS file was successfully produced:
[2025-06-28 11:51:44] -rw-------. 1 boinc boinc 233671932 Jun 28 11:50 shared/HITS.pool.root.1
[2025-06-28 11:51:44]  *** Contents of shared directory: ***
[2025-06-28 11:51:44] total 515808
[2025-06-28 11:51:44] -rw-r--r--. 2 boinc boinc     15095 Jun 28 10:35 start_atlas.sh
[2025-06-28 11:51:44] -rw-r--r--. 2 boinc boinc    542889 Jun 28 10:35 input.tar.gz
[2025-06-28 11:51:44] -rw-r--r--. 2 boinc boinc 293201998 Jun 28 10:35 ATLAS.root_0
[2025-06-28 11:51:44] -rw-------. 1 boinc boinc 233671932 Jun 28 11:50 HITS.pool.root.1
[2025-06-28 11:51:44] -rw-------. 1 boinc boinc    747520 Jun 28 11:51 result.tar.gz
11:51:45 (13431): run_atlas exited; CPU time 29814.358712
11:51:45 (13431): called boinc_finish(0)

</stderr_txt>
]]>

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