Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:47:06 (16722): wrapper (7.7.26015): starting
04:47:06 (16722): wrapper: running run_atlas (--nthreads 8)
[2025-06-28 04:47:06] Arguments: --nthreads 8
[2025-06-28 04:47:06] Threads: 8
[2025-06-28 04:47:06] Checking for CVMFS
[2025-06-28 04:47:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-28 04:47:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-28 04:47:06] Running cvmfs_config stat atlas.cern.ch
[2025-06-28 04:47:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-28 04:47:06] 2.11.2.0 11919 67299 101292 147665 0 31 18869172 25165825 364 130560 0 33254887 99.799 40159079 4036 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-28 04:47:06] CVMFS is ok
[2025-06-28 04:47:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-28 04:47:06] Checking for apptainer binary...
[2025-06-28 04:47:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-28 04:47:06] Running /usr/bin/apptainer --version
[2025-06-28 04:47:06] apptainer version 1.3.2-1.el7
[2025-06-28 04:47:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-28 04:47:07] cg-vwn425.simple-grid.lan
[2025-06-28 04:47:07] apptainer works
[2025-06-28 04:47:07] Set ATHENA_PROC_NUMBER=8
[2025-06-28 04:47:07] Set ATHENA_CORE_NUMBER=8
[2025-06-28 04:47:07] Starting ATLAS job with PandaID=6711249941
[2025-06-28 04:47:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/17 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-28 06:21:46]  *** The last 200 lines of the pilot log: ***
[2025-06-28 06:21:46]  mtime=0
[2025-06-28 06:21:46]  protocol_id=None
[2025-06-28 06:21:46]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-28 06:21:46]  replicas=None
[2025-06-28 06:21:46]  scope=mc23_13p6TeV
[2025-06-28 06:21:46]  status=None
[2025-06-28 06:21:46]  status_code=0
[2025-06-28 06:21:46]  storage_token=
[2025-06-28 06:21:46]  surl=/var/lib/boinc/slots/17/PanDA_Pilot-6711249941/log.45389247._000023.job.log.tgz.1
[2025-06-28 06:21:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/32/b2/log.45389247._000023.job.log.tgz.1
[2025-06-28 06:21:46]  workdir=None
[2025-06-28 06:21:46] ]
[2025-06-28 06:21:46] 2025-06-28 04:21:09,647 | INFO     | transferring file log.45389247._000023.job.log.tgz.1 from /var/lib/boinc/slots/17/PanDA_Pilot-6711249941/log.45389247._000023.job.log.tgz.1 to /var/lib/boinc/slots
[2025-06-28 06:21:46] 2025-06-28 04:21:09,647 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/17/PanDA_Pilot-6711249941/log.45389247._000023.job.log.tgz.1 /var/lib/boinc/slots/17/log.45389247._000023.j
[2025-06-28 06:21:46] 2025-06-28 04:21:09,660 | INFO     | adding to output.list: log.45389247._000023.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/32/b2/log.45389247._000023.job.log.tg
[2025-06-28 06:21:46] 2025-06-28 04:21:09,661 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-28 06:21:46] 2025-06-28 04:21:09,661 | INFO     | summary of transferred files:
[2025-06-28 06:21:46] 2025-06-28 04:21:09,661 | INFO     |  -- lfn=log.45389247._000023.job.log.tgz.1, status_code=0, status=transferred
[2025-06-28 06:21:46] 2025-06-28 04:21:09,661 | INFO     | stage-out finished correctly
[2025-06-28 06:21:46] 2025-06-28 04:21:09,919 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-28 06:21:46] 2025-06-28 04:21:09,977 | INFO     | job 6711249941 has state=finished
[2025-06-28 06:21:46] 2025-06-28 04:21:09,977 | INFO     | preparing for final server update for job 6711249941 in state='finished'
[2025-06-28 06:21:46] 2025-06-28 04:21:09,977 | INFO     | this job has now completed (state=finished)
[2025-06-28 06:21:46] 2025-06-28 04:21:09,977 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-28 06:21:46] 2025-06-28 04:21:09,978 | INFO     | log transfer has been attempted: DONE
[2025-06-28 06:21:46] 2025-06-28 04:21:09,978 | INFO     | job 6711249941 has finished - writing final server update
[2025-06-28 06:21:46] 2025-06-28 04:21:09,978 | INFO     | total number of processed events: 400 (read)
[2025-06-28 06:21:46] 2025-06-28 04:21:09,978 | INFO     | executing command: lscpu
[2025-06-28 06:21:46] 2025-06-28 04:21:09,984 | INFO     | monitor loop #398: job 0:6711249941 is in state 'finished'
[2025-06-28 06:21:46] 2025-06-28 04:21:09,984 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-28 06:21:46] 2025-06-28 04:21:09,991 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-28 06:21:46] 2025-06-28 04:21:12,487 | INFO     | monitor loop #399: job 0:6711249941 is in state 'finished'
[2025-06-28 06:21:46] 2025-06-28 04:21:12,487 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-28 06:21:46] 2025-06-28 04:21:13,115 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-28 06:21:46] 2025-06-28 04:21:13,116 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-06-28 06:21:46] 2025-06-28 04:21:13,117 | INFO     | using path: /var/lib/boinc/slots/17/PanDA_Pilot-6711249941/memory_monitor_summary.json (trf name=prmon)
[2025-06-28 06:21:46] 2025-06-28 04:21:13,117 | INFO     | extracted standard info from prmon json
[2025-06-28 06:21:46] 2025-06-28 04:21:13,117 | INFO     | extracted standard memory fields from prmon json
[2025-06-28 06:21:46] 2025-06-28 04:21:13,118 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-28 06:21:46] 2025-06-28 04:21:13,118 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-28 06:21:46] 2025-06-28 04:21:13,118 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-28 06:21:46] 2025-06-28 04:21:13,119 | INFO     | fitting pss+swap vs Time
[2025-06-28 06:21:46] 2025-06-28 04:21:13,119 | INFO     | sum of square deviations: 190403570.0
[2025-06-28 06:21:46] 2025-06-28 04:21:13,119 | INFO     | sum of deviations: 2153129200.0000014
[2025-06-28 06:21:46] 2025-06-28 04:21:13,119 | INFO     | mean x: 1751081722.0
[2025-06-28 06:21:46] 2025-06-28 04:21:13,120 | INFO     | mean y: 2838150.988235294
[2025-06-28 06:21:46] 2025-06-28 04:21:13,120 | INFO     | -- intersect: -19798813610.186646
[2025-06-28 06:21:46] 2025-06-28 04:21:13,120 | INFO     | intersect: -19798813610.186646
[2025-06-28 06:21:46] 2025-06-28 04:21:13,120 | INFO     | chi2: 0.001329037457629927
[2025-06-28 06:21:46] 2025-06-28 04:21:13,120 | INFO     | -- intersect: -19798813610.186646
[2025-06-28 06:21:46] 2025-06-28 04:21:13,120 | INFO     | current memory leak: 11.31 B/s (using 85 data points, chi2=0.00)
[2025-06-28 06:21:46] 2025-06-28 04:21:13,120 | INFO     | could have reported an average CPU frequency of 1999 MHz (6 samples)
[2025-06-28 06:21:46] 2025-06-28 04:21:13,120 | INFO     | ..............................
[2025-06-28 06:21:46] 2025-06-28 04:21:13,120 | INFO     | . Timing measurements:
[2025-06-28 06:21:46] 2025-06-28 04:21:13,120 | INFO     | . get job = 0 s
[2025-06-28 06:21:46] 2025-06-28 04:21:13,120 | INFO     | . initial setup = 1 s
[2025-06-28 06:21:46] 2025-06-28 04:21:13,120 | INFO     | . payload setup = 4 s
[2025-06-28 06:21:46] 2025-06-28 04:21:13,120 | INFO     | . stage-in = 0 s
[2025-06-28 06:21:46] 2025-06-28 04:21:13,120 | INFO     | . payload execution = 5613 s
[2025-06-28 06:21:46] 2025-06-28 04:21:13,120 | INFO     | . stage-out = 0 s
[2025-06-28 06:21:46] 2025-06-28 04:21:13,121 | INFO     | . log creation = 0 s
[2025-06-28 06:21:46] 2025-06-28 04:21:13,121 | INFO     | ..............................
[2025-06-28 06:21:46] 2025-06-28 04:21:13,179 | INFO     | 
[2025-06-28 06:21:46] 2025-06-28 04:21:13,180 | INFO     | job summary report
[2025-06-28 06:21:46] 2025-06-28 04:21:13,180 | INFO     | --------------------------------------------------
[2025-06-28 06:21:46] 2025-06-28 04:21:13,180 | INFO     | PanDA job id: 6711249941
[2025-06-28 06:21:46] 2025-06-28 04:21:13,180 | INFO     | task id: 45389247
[2025-06-28 06:21:46] 2025-06-28 04:21:13,180 | INFO     | errors: (none)
[2025-06-28 06:21:46] 2025-06-28 04:21:13,180 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-28 06:21:46] 2025-06-28 04:21:13,180 | INFO     | pilot state: finished 
[2025-06-28 06:21:46] 2025-06-28 04:21:13,180 | INFO     | transexitcode: 0
[2025-06-28 06:21:46] 2025-06-28 04:21:13,180 | INFO     | exeerrorcode: 0
[2025-06-28 06:21:46] 2025-06-28 04:21:13,180 | INFO     | exeerrordiag: 
[2025-06-28 06:21:46] 2025-06-28 04:21:13,180 | INFO     | exitcode: 0
[2025-06-28 06:21:46] 2025-06-28 04:21:13,180 | INFO     | exitmsg: OK
[2025-06-28 06:21:46] 2025-06-28 04:21:13,180 | INFO     | cpuconsumptiontime: 36921 s
[2025-06-28 06:21:46] 2025-06-28 04:21:13,180 | INFO     | nevents: 400
[2025-06-28 06:21:46] 2025-06-28 04:21:13,180 | INFO     | neventsw: 0
[2025-06-28 06:21:46] 2025-06-28 04:21:13,180 | INFO     | pid: 26872
[2025-06-28 06:21:46] 2025-06-28 04:21:13,180 | INFO     | pgrp: 26872
[2025-06-28 06:21:46] 2025-06-28 04:21:13,180 | INFO     | corecount: 8
[2025-06-28 06:21:46] 2025-06-28 04:21:13,180 | INFO     | event service: False
[2025-06-28 06:21:46] 2025-06-28 04:21:13,180 | INFO     | sizes: {0: 2366688, 2: 2366950, 11: 2366978, 5621: 2393617, 5623: 2402673, 5627: 2402811}
[2025-06-28 06:21:46] 2025-06-28 04:21:13,180 | INFO     | --------------------------------------------------
[2025-06-28 06:21:46] 2025-06-28 04:21:13,180 | INFO     | 
[2025-06-28 06:21:46] 2025-06-28 04:21:13,181 | INFO     | executing command: ls -lF /var/lib/boinc/slots/17
[2025-06-28 06:21:46] 2025-06-28 04:21:13,194 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-28 06:21:46] 2025-06-28 04:21:13,194 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-28 06:21:46] 2025-06-28 04:21:13,194 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-28 06:21:46] 2025-06-28 04:21:13,194 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-28 06:21:46] 2025-06-28 04:21:13,194 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-28 06:21:46] 2025-06-28 04:21:13,194 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-28 06:21:46] 2025-06-28 04:21:13,195 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-28 06:21:46] 2025-06-28 04:21:13,195 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-28 06:21:46] 2025-06-28 04:21:13,195 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-28 06:21:46] 2025-06-28 04:21:13,195 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-28 06:21:46] 2025-06-28 04:21:13,195 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-28 06:21:46] 2025-06-28 04:21:13,195 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-28 06:21:46] 2025-06-28 04:21:13,195 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-28 06:21:46] 2025-06-28 04:21:13,195 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-28 06:21:46] 2025-06-28 04:21:13,195 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-28 06:21:46] 2025-06-28 04:21:13,195 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-28 06:21:46] 2025-06-28 04:21:13,195 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-28 06:21:46] 2025-06-28 04:21:13,195 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-28 06:21:46] 2025-06-28 04:21:13,195 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-28 06:21:46] 2025-06-28 04:21:13,195 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-28 06:21:46] 2025-06-28 04:21:13,195 | INFO     | job 6711249941 has completed (purged errors)
[2025-06-28 06:21:46] 2025-06-28 04:21:13,196 | INFO     | overall cleanup function is called
[2025-06-28 06:21:46] 2025-06-28 04:21:14,202 | INFO     | --- collectZombieJob: --- 10, [26872]
[2025-06-28 06:21:46] 2025-06-28 04:21:14,202 | INFO     | zombie collector waiting for pid 26872
[2025-06-28 06:21:46] 2025-06-28 04:21:14,202 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-28 06:21:46] 2025-06-28 04:21:14,203 | INFO     | collected zombie processes
[2025-06-28 06:21:46] 2025-06-28 04:21:14,203 | INFO     | will attempt to kill all subprocesses of pid=26872
[2025-06-28 06:21:46] 2025-06-28 04:21:14,243 | INFO     | process IDs to be killed: [26872] (in reverse order)
[2025-06-28 06:21:46] 2025-06-28 04:21:14,270 | WARNING  | found no corresponding commands to process id(s)
[2025-06-28 06:21:46] 2025-06-28 04:21:14,270 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-28 06:21:46] 2025-06-28 04:21:14,271 | INFO     | did not find any defunct processes belonging to 26872
[2025-06-28 06:21:46] 2025-06-28 04:21:14,272 | INFO     | did not find any defunct processes belonging to 26872
[2025-06-28 06:21:46] 2025-06-28 04:21:14,272 | INFO     | ready for new job
[2025-06-28 06:21:46] 2025-06-28 04:21:14,272 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-28 06:21:46] 2025-06-28 04:21:14,273 | INFO     | ***************************************
[2025-06-28 06:21:46] 2025-06-28 04:21:14,273 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-06-28 06:21:46] 2025-06-28 04:21:14,273 | INFO     | ***************************************
[2025-06-28 06:21:46] 2025-06-28 04:21:14,273 | INFO     | 
[2025-06-28 06:21:46] 2025-06-28 04:21:14,274 | INFO     | pilot is running in a VM
[2025-06-28 06:21:46] 2025-06-28 04:21:14,274 | INFO     | architecture information:
[2025-06-28 06:21:46] 2025-06-28 04:21:14,274 | INFO     | executing command: cat /etc/os-release
[2025-06-28 06:21:46] 2025-06-28 04:21:14,283 | INFO     | cat /etc/os-release:
[2025-06-28 06:21:46] NAME="CentOS Linux"
[2025-06-28 06:21:46] VERSION="7 (Core)"
[2025-06-28 06:21:46] ID="centos"
[2025-06-28 06:21:46] ID_LIKE="rhel fedora"
[2025-06-28 06:21:46] VERSION_ID="7"
[2025-06-28 06:21:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-28 06:21:46] ANSI_COLOR="0;31"
[2025-06-28 06:21:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-28 06:21:46] HOME_URL="https://www.centos.org/"
[2025-06-28 06:21:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-28 06:21:46] 
[2025-06-28 06:21:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-28 06:21:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-28 06:21:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-28 06:21:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-28 06:21:46] 
[2025-06-28 06:21:46] 2025-06-28 04:21:14,283 | INFO     | ***************************************
[2025-06-28 06:21:46] 2025-06-28 04:21:14,786 | INFO     | executing command: df -mP /var/lib/boinc/slots/17
[2025-06-28 06:21:46] 2025-06-28 04:21:14,799 | INFO     | sufficient remaining disk space (494705573888 B)
[2025-06-28 06:21:46] 2025-06-28 04:21:14,799 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-28 06:21:46] 2025-06-28 04:21:14,799 | INFO     | current server update state: UPDATING_FINAL
[2025-06-28 06:21:46] 2025-06-28 04:21:14,799 | INFO     | update_server=False
[2025-06-28 06:21:46] 2025-06-28 04:21:14,799 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-28 06:21:46] 2025-06-28 04:21:14,799 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-28 06:21:46] 2025-06-28 04:21:14,990 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-28 06:21:46] 2025-06-28 04:21:14,990 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-28 06:21:46] 2025-06-28 04:21:14,991 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-28 06:21:46] 2025-06-28 04:21:14,991 | INFO     | will abort loop
[2025-06-28 06:21:46] 2025-06-28 04:21:15,045 | INFO     | all payload control threads have been joined
[2025-06-28 06:21:46] 2025-06-28 04:21:15,228 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-28 06:21:46] 2025-06-28 04:21:15,305 | INFO     | all data control threads have been joined
[2025-06-28 06:21:46] 2025-06-28 04:21:15,769 | INFO     | all job control threads have been joined
[2025-06-28 06:21:46] 2025-06-28 04:21:15,801 | INFO     | [job] queue monitor thread has finished
[2025-06-28 06:21:46] 2025-06-28 04:21:15,804 | INFO     | [job] retrieve thread has finished
[2025-06-28 06:21:46] 2025-06-28 04:21:15,878 | INFO     | [job] create_data_payload thread has finished
[2025-06-28 06:21:46] 2025-06-28 04:21:15,982 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-28 06:21:46] 2025-06-28 04:21:15,996 | INFO     | [job] job monitor thread has finished
[2025-06-28 06:21:46] 2025-06-28 04:21:16,050 | INFO     | [payload] control thread has finished
[2025-06-28 06:21:46] 2025-06-28 04:21:16,084 | INFO     | [payload] validate_pre thread has finished
[2025-06-28 06:21:46] 2025-06-28 04:21:16,310 | INFO     | [data] control thread has finished
[2025-06-28 06:21:46] 2025-06-28 04:21:16,424 | INFO     | [payload] execute_payloads thread has finished
[2025-06-28 06:21:46] 2025-06-28 04:21:16,768 | INFO     | [data] copytool_in thread has finished
[2025-06-28 06:21:46] 2025-06-28 04:21:16,774 | INFO     | [job] control thread has finished
[2025-06-28 06:21:46] 2025-06-28 04:21:16,982 | INFO     | [payload] failed_post thread has finished
[2025-06-28 06:21:46] 2025-06-28 04:21:16,990 | INFO     | [payload] validate_post thread has finished
[2025-06-28 06:21:46] 2025-06-28 04:21:17,190 | INFO     | [job] validate thread has finished
[2025-06-28 06:21:46] 2025-06-28 04:21:17,233 | INFO     | [data] copytool_out thread has finished
[2025-06-28 06:21:46] 2025-06-28 04:21:19,988 | INFO     | [data] queue_monitor thread has finished
[2025-06-28 06:21:46] 2025-06-28 04:21:25,639 | INFO     | job.realtimelogging is not enabled
[2025-06-28 06:21:46] 2025-06-28 04:21:26,641 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-28 06:21:46] 2025-06-28 04:21:27,808 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139783471527744)>', '<ExcThread(monitor, started 139782646650624)>']
[2025-06-28 06:21:46] 2025-06-28 04:21:32,832 | INFO     | all workflow threads have been joined
[2025-06-28 06:21:46] 2025-06-28 04:21:32,832 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-28 06:21:46] 2025-06-28 04:21:32,832 | INFO     | traces error code: 0
[2025-06-28 06:21:46] 2025-06-28 04:21:32,832 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-28 06:21:46] 2025-06-28 04:21:45,857 | INFO     | PID=20363 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-28 06:21:46] 2025-06-28 04:21:45,858 | INFO     | .. there are 2 such processes running
[2025-06-28 06:21:46] 2025-06-28 04:21:45,858 | INFO     | found 0 job(s) in 20 queues
[2025-06-28 06:21:46] 2025-06-28 04:21:45,858 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-28 06:21:46] 2025-06-28 04:21:45,859 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-28 06:21:46] 2025-06-28 04:21:45,859 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-28 06:21:46] 2025-06-28 04:21:45,859 | INFO     | [monitor] control thread has ended
[2025-06-28 06:21:46] 2025-06-28 04:21:45,933 [wrapper] ==== pilot stdout END ====
[2025-06-28 06:21:46] 2025-06-28 04:21:45,935 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-28 06:21:46] 2025-06-28 04:21:45,938 [wrapper] pilotpid: 20363
[2025-06-28 06:21:46] 2025-06-28 04:21:45,940 [wrapper] Pilot exit status: 0
[2025-06-28 06:21:46] 2025-06-28 04:21:45,948 [wrapper] pandaids: 6711249941
[2025-06-28 06:21:46] 2025-06-28 04:21:45,964 [wrapper] cleanup supervisor_pilot  6156 20364
[2025-06-28 06:21:46] 2025-06-28 04:21:45,970 [wrapper] Test setup, not cleaning
[2025-06-28 06:21:46] 2025-06-28 04:21:45,971 [wrapper] apfmon messages muted
[2025-06-28 06:21:46] 2025-06-28 04:21:45,973 [wrapper] ==== wrapper stdout END ====
[2025-06-28 06:21:46] 2025-06-28 04:21:45,975 [wrapper] ==== wrapper stderr END ====
[2025-06-28 06:21:46]  *** Error codes and diagnostics ***
[2025-06-28 06:21:46]     "exeErrorCode": 0,
[2025-06-28 06:21:46]     "exeErrorDiag": "",
[2025-06-28 06:21:46]     "pilotErrorCode": 0,
[2025-06-28 06:21:46]     "pilotErrorDiag": "",
[2025-06-28 06:21:46]  *** Listing of results directory ***
[2025-06-28 06:21:46] total 529308
[2025-06-28 06:21:46] -rw-r--r--. 1 boinc boinc    530466 Jun 28 04:33 pilot3.tar.gz
[2025-06-28 06:21:46] -rw-r--r--. 1 boinc boinc      5112 Jun 28 04:42 queuedata.json
[2025-06-28 06:21:46] -rwx------. 1 boinc boinc     36245 Jun 28 04:43 runpilot2-wrapper.sh
[2025-06-28 06:21:46] -rw-r--r--. 1 boinc boinc       100 Jun 28 04:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-28 06:21:46] -rwxr-xr-x. 1 boinc boinc      7986 Jun 28 04:47 run_atlas
[2025-06-28 06:21:46] -rw-r--r--. 1 boinc boinc       105 Jun 28 04:47 job.xml
[2025-06-28 06:21:46] -rw-r--r--. 2 boinc boinc     15095 Jun 28 04:47 start_atlas.sh
[2025-06-28 06:21:46] drwxrwx--x. 2 boinc boinc        68 Jun 28 04:47 shared
[2025-06-28 06:21:46] -rw-r--r--. 2 boinc boinc    542891 Jun 28 04:47 input.tar.gz
[2025-06-28 06:21:46] -rw-r--r--. 1 boinc boinc      6393 Jun 28 04:47 init_data.xml
[2025-06-28 06:21:46] -rw-r--r--. 2 boinc boinc 296830441 Jun 28 04:47 EVNT.45389245._000001.pool.root.1
[2025-06-28 06:21:46] -rw-r--r--. 1 boinc boinc         0 Jun 28 04:47 boinc_lockfile
[2025-06-28 06:21:46] -rw-r--r--. 1 boinc boinc      2632 Jun 28 04:47 pandaJob.out
[2025-06-28 06:21:46] -rw-------. 1 boinc boinc    969217 Jun 28 04:47 agis_schedconf.cvmfs.json
[2025-06-28 06:21:46] -rw-------. 1 boinc boinc   1574086 Jun 28 04:47 agis_ddmendpoints.agis.ALL.json
[2025-06-28 06:21:46] drwx------. 4 boinc boinc      4096 Jun 28 04:47 pilot3
[2025-06-28 06:21:46] -rw-------. 1 boinc boinc 239647581 Jun 28 06:20 HITS.45389247._000023.pool.root.1
[2025-06-28 06:21:46] -rw-r--r--. 1 boinc boinc       530 Jun 28 06:20 boinc_task_state.xml
[2025-06-28 06:21:46] -rw-------. 1 boinc boinc      1009 Jun 28 06:21 memory_monitor_summary.json
[2025-06-28 06:21:46] -rw-------. 1 boinc boinc        95 Jun 28 06:21 pilot_heartbeat.json
[2025-06-28 06:21:46] -rw-------. 1 boinc boinc    323376 Jun 28 06:21 log.45389247._000023.job.log.tgz.1
[2025-06-28 06:21:46] -rw-------. 1 boinc boinc      7750 Jun 28 06:21 heartbeat.json
[2025-06-28 06:21:46] -rw-r--r--. 1 boinc boinc        27 Jun 28 06:21 wrapper_checkpoint.txt
[2025-06-28 06:21:46] -rw-r--r--. 1 boinc boinc      8192 Jun 28 06:21 boinc_mmap_file
[2025-06-28 06:21:46] -rw-------. 1 boinc boinc       820 Jun 28 06:21 pilotlog.txt
[2025-06-28 06:21:46] -rw-------. 1 boinc boinc    528070 Jun 28 06:21 log.45389247._000023.job.log.1
[2025-06-28 06:21:46] -rw-------. 1 boinc boinc       357 Jun 28 06:21 output.list
[2025-06-28 06:21:46] -rw-r--r--. 1 boinc boinc       620 Jun 28 06:21 runtime_log
[2025-06-28 06:21:46] -rw-------. 1 boinc boinc    870400 Jun 28 06:21 result.tar.gz
[2025-06-28 06:21:46] -rw-r--r--. 1 boinc boinc      8673 Jun 28 06:21 runtime_log.err
[2025-06-28 06:21:46] -rw-------. 1 boinc boinc       651 Jun 28 06:21 9ArNDmKiap7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmD91KDmTSYUJm.diag
[2025-06-28 06:21:46] -rw-r--r--. 1 boinc boinc     21306 Jun 28 06:21 stderr.txt
[2025-06-28 06:21:46] HITS file was successfully produced:
[2025-06-28 06:21:46] -rw-------. 1 boinc boinc 239647581 Jun 28 06:20 shared/HITS.pool.root.1
[2025-06-28 06:21:46]  *** Contents of shared directory: ***
[2025-06-28 06:21:46] total 525308
[2025-06-28 06:21:46] -rw-r--r--. 2 boinc boinc     15095 Jun 28 04:47 start_atlas.sh
[2025-06-28 06:21:46] -rw-r--r--. 2 boinc boinc    542891 Jun 28 04:47 input.tar.gz
[2025-06-28 06:21:46] -rw-r--r--. 2 boinc boinc 296830441 Jun 28 04:47 ATLAS.root_0
[2025-06-28 06:21:46] -rw-------. 1 boinc boinc 239647581 Jun 28 06:20 HITS.pool.root.1
[2025-06-28 06:21:46] -rw-------. 1 boinc boinc    870400 Jun 28 06:21 result.tar.gz
06:21:47 (16722): run_atlas exited; CPU time 36939.446878
06:21:47 (16722): called boinc_finish(0)

</stderr_txt>
]]>

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