Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:47:46 (42342): wrapper (7.7.26015): starting
00:47:46 (42342): wrapper: running run_atlas (--nthreads 4)
[2025-06-25 00:47:46] Arguments: --nthreads 4
[2025-06-25 00:47:46] Threads: 4
[2025-06-25 00:47:46] Checking for CVMFS
[2025-06-25 00:47:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-25 00:47:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-25 00:47:46] Running cvmfs_config stat atlas.cern.ch
[2025-06-25 00:47:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-25 00:47:46] 2.9.2.0 14401 91 52312 147543 0 56 30878105 36864001 0 130560 0 72182 99.974 6686 4250 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-25 00:47:46] CVMFS is ok
[2025-06-25 00:47:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-25 00:47:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-25 00:47:46] Further information can be found at the LHC@home message board.
[2025-06-25 00:47:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-25 00:47:46] Checking for apptainer binary...
[2025-06-25 00:47:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-25 00:47:46] Running /usr/bin/apptainer --version
[2025-06-25 00:47:46] apptainer version 1.4.1-1.1
[2025-06-25 00:47:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-25 00:47:46] thA314
[2025-06-25 00:47:46] apptainer works
[2025-06-25 00:47:46] Set ATHENA_PROC_NUMBER=4
[2025-06-25 00:47:46] Set ATHENA_CORE_NUMBER=4
[2025-06-25 00:47:46] Starting ATLAS job with PandaID=6706600139
[2025-06-25 00:47:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-25 02:19:43]  *** The last 200 lines of the pilot log: ***
[2025-06-25 02:19:43]  mtime=0
[2025-06-25 02:19:43]  protocol_id=None
[2025-06-25 02:19:43]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-25 02:19:43]  replicas=None
[2025-06-25 02:19:43]  scope=mc23_13p6TeV
[2025-06-25 02:19:43]  status=None
[2025-06-25 02:19:43]  status_code=0
[2025-06-25 02:19:43]  storage_token=
[2025-06-25 02:19:43]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6706600139/log.45275320._007685.job.log.tgz.1
[2025-06-25 02:19:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ea/9a/log.45275320._007685.job.log.tgz.1
[2025-06-25 02:19:43]  workdir=None
[2025-06-25 02:19:43] ]
[2025-06-25 02:19:43] 2025-06-25 00:19:04,415 | INFO     | transferring file log.45275320._007685.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6706600139/log.45275320._007685.job.log.tgz.1 to /local/data/boinc/
[2025-06-25 02:19:43] 2025-06-25 00:19:04,415 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6706600139/log.45275320._007685.job.log.tgz.1 /local/data/boinc/slots/0/log.45275320._0076
[2025-06-25 02:19:43] 2025-06-25 00:19:04,434 | INFO     | adding to output.list: log.45275320._007685.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ea/9a/log.45275320._007685.job.log.tg
[2025-06-25 02:19:43] 2025-06-25 00:19:04,434 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-25 02:19:43] 2025-06-25 00:19:04,434 | INFO     | summary of transferred files:
[2025-06-25 02:19:43] 2025-06-25 00:19:04,434 | INFO     |  -- lfn=log.45275320._007685.job.log.tgz.1, status_code=0, status=transferred
[2025-06-25 02:19:43] 2025-06-25 00:19:04,434 | INFO     | stage-out finished correctly
[2025-06-25 02:19:43] 2025-06-25 00:19:07,629 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-25 02:19:43] 2025-06-25 00:19:08,140 | INFO     | job 6706600139 has state=finished
[2025-06-25 02:19:43] 2025-06-25 00:19:08,140 | INFO     | preparing for final server update for job 6706600139 in state='finished'
[2025-06-25 02:19:43] 2025-06-25 00:19:08,140 | INFO     | this job has now completed (state=finished)
[2025-06-25 02:19:43] 2025-06-25 00:19:08,140 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-25 02:19:43] 2025-06-25 00:19:08,140 | INFO     | log transfer has been attempted: DONE
[2025-06-25 02:19:43] 2025-06-25 00:19:08,141 | INFO     | job 6706600139 has finished - writing final server update
[2025-06-25 02:19:43] 2025-06-25 00:19:08,141 | INFO     | total number of processed events: 400 (read)
[2025-06-25 02:19:43] 2025-06-25 00:19:08,141 | INFO     | executing command: lscpu
[2025-06-25 02:19:43] 2025-06-25 00:19:08,162 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-25 02:19:43] 2025-06-25 00:19:08,592 | WARNING  | process 52671 can no longer be monitored (due to stat problems) - aborting
[2025-06-25 02:19:43] 2025-06-25 00:19:08,592 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6706600139/memory_monitor_summary.json (trf name=prmon)
[2025-06-25 02:19:43] 2025-06-25 00:19:08,645 | INFO     | number of running child processes to parent process 52671: 1
[2025-06-25 02:19:43] 2025-06-25 00:19:08,645 | INFO     | maximum number of monitored processes: 6
[2025-06-25 02:19:43] 2025-06-25 00:19:11,148 | INFO     | monitor loop #420: job 0:6706600139 is in state 'finished'
[2025-06-25 02:19:43] 2025-06-25 00:19:11,148 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-25 02:19:43] 2025-06-25 00:19:11,547 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-25 02:19:43] 2025-06-25 00:19:11,549 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3327.006999999999
[2025-06-25 02:19:43] 2025-06-25 00:19:11,550 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6706600139/memory_monitor_summary.json (trf name=prmon)
[2025-06-25 02:19:43] 2025-06-25 00:19:11,550 | INFO     | extracted standard info from prmon json
[2025-06-25 02:19:43] 2025-06-25 00:19:11,550 | INFO     | extracted standard memory fields from prmon json
[2025-06-25 02:19:43] 2025-06-25 00:19:11,550 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-25 02:19:43] 2025-06-25 00:19:11,550 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-25 02:19:43] 2025-06-25 00:19:11,550 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-25 02:19:43] 2025-06-25 00:19:11,551 | INFO     | fitting pss+swap vs Time
[2025-06-25 02:19:43] 2025-06-25 00:19:11,551 | INFO     | sum of square deviations: 177275882.0
[2025-06-25 02:19:43] 2025-06-25 00:19:11,551 | INFO     | sum of deviations: -10155911716.0
[2025-06-25 02:19:43] 2025-06-25 00:19:11,551 | INFO     | mean x: 1750808104.0
[2025-06-25 02:19:43] 2025-06-25 00:19:11,552 | INFO     | mean y: 2494515.578313253
[2025-06-25 02:19:43] 2025-06-25 00:19:11,552 | INFO     | -- intersect: 100304082838.13054
[2025-06-25 02:19:43] 2025-06-25 00:19:11,552 | INFO     | intersect: 100304082838.13054
[2025-06-25 02:19:43] 2025-06-25 00:19:11,552 | INFO     | chi2: 0.09250214314164011
[2025-06-25 02:19:43] 2025-06-25 00:19:11,552 | INFO     | -- intersect: 100304082838.13054
[2025-06-25 02:19:43] 2025-06-25 00:19:11,552 | INFO     | current memory leak: -57.29 B/s (using 83 data points, chi2=0.09)
[2025-06-25 02:19:43] 2025-06-25 00:19:11,552 | INFO     | could have reported an average CPU frequency of 3680 MHz (7 samples)
[2025-06-25 02:19:43] 2025-06-25 00:19:11,552 | INFO     | ..............................
[2025-06-25 02:19:43] 2025-06-25 00:19:11,552 | INFO     | . Timing measurements:
[2025-06-25 02:19:43] 2025-06-25 00:19:11,552 | INFO     | . get job = 0 s
[2025-06-25 02:19:43] 2025-06-25 00:19:11,552 | INFO     | . initial setup = 1 s
[2025-06-25 02:19:43] 2025-06-25 00:19:11,552 | INFO     | . payload setup = 5 s
[2025-06-25 02:19:43] 2025-06-25 00:19:11,552 | INFO     | . stage-in = 0 s
[2025-06-25 02:19:43] 2025-06-25 00:19:11,552 | INFO     | . payload execution = 5446 s
[2025-06-25 02:19:43] 2025-06-25 00:19:11,552 | INFO     | . stage-out = 0 s
[2025-06-25 02:19:43] 2025-06-25 00:19:11,552 | INFO     | . log creation = 0 s
[2025-06-25 02:19:43] 2025-06-25 00:19:11,552 | INFO     | ..............................
[2025-06-25 02:19:43] 2025-06-25 00:19:11,767 | INFO     | 
[2025-06-25 02:19:43] 2025-06-25 00:19:11,767 | INFO     | job summary report
[2025-06-25 02:19:43] 2025-06-25 00:19:11,767 | INFO     | --------------------------------------------------
[2025-06-25 02:19:43] 2025-06-25 00:19:11,768 | INFO     | PanDA job id: 6706600139
[2025-06-25 02:19:43] 2025-06-25 00:19:11,768 | INFO     | task id: 45275320
[2025-06-25 02:19:43] 2025-06-25 00:19:11,768 | INFO     | errors: (none)
[2025-06-25 02:19:43] 2025-06-25 00:19:11,768 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-25 02:19:43] 2025-06-25 00:19:11,768 | INFO     | pilot state: finished 
[2025-06-25 02:19:43] 2025-06-25 00:19:11,768 | INFO     | transexitcode: 0
[2025-06-25 02:19:43] 2025-06-25 00:19:11,768 | INFO     | exeerrorcode: 0
[2025-06-25 02:19:43] 2025-06-25 00:19:11,768 | INFO     | exeerrordiag: 
[2025-06-25 02:19:43] 2025-06-25 00:19:11,768 | INFO     | exitcode: 0
[2025-06-25 02:19:43] 2025-06-25 00:19:11,768 | INFO     | exitmsg: OK
[2025-06-25 02:19:43] 2025-06-25 00:19:11,768 | INFO     | cpuconsumptiontime: 20720 s
[2025-06-25 02:19:43] 2025-06-25 00:19:11,768 | INFO     | nevents: 400
[2025-06-25 02:19:43] 2025-06-25 00:19:11,768 | INFO     | neventsw: 0
[2025-06-25 02:19:43] 2025-06-25 00:19:11,768 | INFO     | pid: 52671
[2025-06-25 02:19:43] 2025-06-25 00:19:11,768 | INFO     | pgrp: 52671
[2025-06-25 02:19:43] 2025-06-25 00:19:11,768 | INFO     | corecount: 4
[2025-06-25 02:19:43] 2025-06-25 00:19:11,768 | INFO     | event service: False
[2025-06-25 02:19:43] 2025-06-25 00:19:11,768 | INFO     | sizes: {0: 2369356, 1: 2369555, 4: 2369817, 11: 2369845, 5455: 2396565, 5456: 2405569, 5459: 2405753, 5463: 2405947}
[2025-06-25 02:19:43] 2025-06-25 00:19:11,768 | INFO     | --------------------------------------------------
[2025-06-25 02:19:43] 2025-06-25 00:19:11,768 | INFO     | 
[2025-06-25 02:19:43] 2025-06-25 00:19:11,768 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-06-25 02:19:43] 2025-06-25 00:19:11,788 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-25 02:19:43] 2025-06-25 00:19:11,789 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-25 02:19:43] 2025-06-25 00:19:11,789 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-25 02:19:43] 2025-06-25 00:19:11,789 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-25 02:19:43] 2025-06-25 00:19:11,789 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-25 02:19:43] 2025-06-25 00:19:11,789 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-25 02:19:43] 2025-06-25 00:19:11,789 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-25 02:19:43] 2025-06-25 00:19:11,789 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-25 02:19:43] 2025-06-25 00:19:11,789 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-25 02:19:43] 2025-06-25 00:19:11,789 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-25 02:19:43] 2025-06-25 00:19:11,789 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-25 02:19:43] 2025-06-25 00:19:11,789 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-25 02:19:43] 2025-06-25 00:19:11,789 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-25 02:19:43] 2025-06-25 00:19:11,789 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-25 02:19:43] 2025-06-25 00:19:11,789 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-25 02:19:43] 2025-06-25 00:19:11,789 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-25 02:19:43] 2025-06-25 00:19:11,789 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-25 02:19:43] 2025-06-25 00:19:11,789 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-25 02:19:43] 2025-06-25 00:19:11,789 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-25 02:19:43] 2025-06-25 00:19:11,789 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-25 02:19:43] 2025-06-25 00:19:11,790 | INFO     | job 6706600139 has completed (purged errors)
[2025-06-25 02:19:43] 2025-06-25 00:19:11,790 | INFO     | overall cleanup function is called
[2025-06-25 02:19:43] 2025-06-25 00:19:12,796 | INFO     | --- collectZombieJob: --- 10, [52671]
[2025-06-25 02:19:43] 2025-06-25 00:19:12,797 | INFO     | zombie collector waiting for pid 52671
[2025-06-25 02:19:43] 2025-06-25 00:19:12,797 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-25 02:19:43] 2025-06-25 00:19:12,797 | INFO     | collected zombie processes
[2025-06-25 02:19:43] 2025-06-25 00:19:12,797 | INFO     | will attempt to kill all subprocesses of pid=52671
[2025-06-25 02:19:43] 2025-06-25 00:19:12,841 | INFO     | process IDs to be killed: [52671] (in reverse order)
[2025-06-25 02:19:43] 2025-06-25 00:19:12,875 | WARNING  | found no corresponding commands to process id(s)
[2025-06-25 02:19:43] 2025-06-25 00:19:12,876 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-25 02:19:43] 2025-06-25 00:19:12,877 | INFO     | did not find any defunct processes belonging to 52671
[2025-06-25 02:19:43] 2025-06-25 00:19:12,878 | INFO     | did not find any defunct processes belonging to 52671
[2025-06-25 02:19:43] 2025-06-25 00:19:12,878 | INFO     | ready for new job
[2025-06-25 02:19:43] 2025-06-25 00:19:12,879 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-25 02:19:43] 2025-06-25 00:19:12,879 | INFO     | ***************************************
[2025-06-25 02:19:43] 2025-06-25 00:19:12,879 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-06-25 02:19:43] 2025-06-25 00:19:12,879 | INFO     | ***************************************
[2025-06-25 02:19:43] 2025-06-25 00:19:12,879 | INFO     | 
[2025-06-25 02:19:43] 2025-06-25 00:19:12,880 | INFO     | architecture information:
[2025-06-25 02:19:43] 2025-06-25 00:19:12,880 | INFO     | executing command: cat /etc/os-release
[2025-06-25 02:19:43] 2025-06-25 00:19:12,894 | INFO     | cat /etc/os-release:
[2025-06-25 02:19:43] NAME="CentOS Linux"
[2025-06-25 02:19:43] VERSION="7 (Core)"
[2025-06-25 02:19:43] ID="centos"
[2025-06-25 02:19:43] ID_LIKE="rhel fedora"
[2025-06-25 02:19:43] VERSION_ID="7"
[2025-06-25 02:19:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-25 02:19:43] ANSI_COLOR="0;31"
[2025-06-25 02:19:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-25 02:19:43] HOME_URL="https://www.centos.org/"
[2025-06-25 02:19:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-25 02:19:43] 
[2025-06-25 02:19:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-25 02:19:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-25 02:19:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-25 02:19:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-25 02:19:43] 
[2025-06-25 02:19:43] 2025-06-25 00:19:12,894 | INFO     | ***************************************
[2025-06-25 02:19:43] 2025-06-25 00:19:13,397 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-25 02:19:43] 2025-06-25 00:19:13,414 | INFO     | sufficient remaining disk space (225511997440 B)
[2025-06-25 02:19:43] 2025-06-25 00:19:13,415 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-25 02:19:43] 2025-06-25 00:19:13,415 | INFO     | current server update state: UPDATING_FINAL
[2025-06-25 02:19:43] 2025-06-25 00:19:13,415 | INFO     | update_server=False
[2025-06-25 02:19:43] 2025-06-25 00:19:13,415 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-25 02:19:43] 2025-06-25 00:19:13,415 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-25 02:19:43] 2025-06-25 00:19:13,415 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-25 02:19:43] 2025-06-25 00:19:13,550 | INFO     | all payload control threads have been joined
[2025-06-25 02:19:43] 2025-06-25 00:19:13,653 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-25 02:19:43] 2025-06-25 00:19:13,653 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-25 02:19:43] 2025-06-25 00:19:13,653 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-25 02:19:43] 2025-06-25 00:19:13,653 | INFO     | will abort loop
[2025-06-25 02:19:43] 2025-06-25 00:19:13,678 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-25 02:19:43] 2025-06-25 00:19:14,420 | INFO     | [job] retrieve thread has finished
[2025-06-25 02:19:43] 2025-06-25 00:19:14,421 | INFO     | [job] queue monitor thread has finished
[2025-06-25 02:19:43] 2025-06-25 00:19:14,440 | INFO     | [job] create_data_payload thread has finished
[2025-06-25 02:19:43] 2025-06-25 00:19:14,495 | INFO     | all data control threads have been joined
[2025-06-25 02:19:43] 2025-06-25 00:19:14,516 | INFO     | [payload] validate_pre thread has finished
[2025-06-25 02:19:43] 2025-06-25 00:19:14,556 | INFO     | [payload] control thread has finished
[2025-06-25 02:19:43] 2025-06-25 00:19:14,659 | INFO     | [job] job monitor thread has finished
[2025-06-25 02:19:43] 2025-06-25 00:19:14,695 | INFO     | all job control threads have been joined
[2025-06-25 02:19:43] 2025-06-25 00:19:14,770 | INFO     | [payload] failed_post thread has finished
[2025-06-25 02:19:43] 2025-06-25 00:19:14,951 | INFO     | [data] copytool_in thread has finished
[2025-06-25 02:19:43] 2025-06-25 00:19:15,115 | INFO     | [payload] execute_payloads thread has finished
[2025-06-25 02:19:43] 2025-06-25 00:19:15,421 | INFO     | [data] copytool_out thread has finished
[2025-06-25 02:19:43] 2025-06-25 00:19:15,501 | INFO     | [data] control thread has finished
[2025-06-25 02:19:43] 2025-06-25 00:19:15,700 | INFO     | [job] control thread has finished
[2025-06-25 02:19:43] 2025-06-25 00:19:15,818 | INFO     | [job] validate thread has finished
[2025-06-25 02:19:43] 2025-06-25 00:19:15,857 | INFO     | [payload] validate_post thread has finished
[2025-06-25 02:19:43] 2025-06-25 00:19:17,684 | INFO     | [data] queue_monitor thread has finished
[2025-06-25 02:19:43] 2025-06-25 00:19:23,854 | INFO     | job.realtimelogging is not enabled
[2025-06-25 02:19:43] 2025-06-25 00:19:24,860 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-25 02:19:43] 2025-06-25 00:19:25,249 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140315931260736)>', '<ExcThread(monitor, started 140315130308352)>']
[2025-06-25 02:19:43] 2025-06-25 00:19:30,275 | INFO     | all workflow threads have been joined
[2025-06-25 02:19:43] 2025-06-25 00:19:30,275 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-25 02:19:43] 2025-06-25 00:19:30,276 | INFO     | traces error code: 0
[2025-06-25 02:19:43] 2025-06-25 00:19:30,276 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-25 02:19:43] 2025-06-25 00:19:43,401 | INFO     | PID=46052 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-25 02:19:43] 2025-06-25 00:19:43,402 | INFO     | found 0 job(s) in 20 queues
[2025-06-25 02:19:43] 2025-06-25 00:19:43,402 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-25 02:19:43] 2025-06-25 00:19:43,402 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-25 02:19:43] 2025-06-25 00:19:43,402 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-25 02:19:43] 2025-06-25 00:19:43,402 | INFO     | [monitor] control thread has ended
[2025-06-25 02:19:43] 2025-06-25 00:19:43,478 [wrapper] ==== pilot stdout END ====
[2025-06-25 02:19:43] 2025-06-25 00:19:43,482 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-25 02:19:43] 2025-06-25 00:19:43,486 [wrapper] pilotpid: 46052
[2025-06-25 02:19:43] 2025-06-25 00:19:43,491 [wrapper] Pilot exit status: 0
[2025-06-25 02:19:43] 2025-06-25 00:19:43,503 [wrapper] pandaids: 6706600139
[2025-06-25 02:19:43] 2025-06-25 00:19:43,526 [wrapper] cleanup supervisor_pilot   65017 46053
[2025-06-25 02:19:43] 2025-06-25 00:19:43,529 [wrapper] Test setup, not cleaning
[2025-06-25 02:19:43] 2025-06-25 00:19:43,533 [wrapper] apfmon messages muted
[2025-06-25 02:19:43] 2025-06-25 00:19:43,537 [wrapper] ==== wrapper stdout END ====
[2025-06-25 02:19:43] 2025-06-25 00:19:43,541 [wrapper] ==== wrapper stderr END ====
[2025-06-25 02:19:43]  *** Error codes and diagnostics ***
[2025-06-25 02:19:43]     "exeErrorCode": 0,
[2025-06-25 02:19:43]     "exeErrorDiag": "",
[2025-06-25 02:19:43]     "pilotErrorCode": 0,
[2025-06-25 02:19:43]     "pilotErrorDiag": "",
[2025-06-25 02:19:43]  *** Listing of results directory ***
[2025-06-25 02:19:43] total 514772
[2025-06-25 02:19:43] -rw-r--r-- 1 boinc boinc    530466 Jun 24 23:00 pilot3.tar.gz
[2025-06-25 02:19:43] -rw-r--r-- 1 boinc boinc      5112 Jun 24 23:13 queuedata.json
[2025-06-25 02:19:43] -rwx------ 1 boinc boinc     36245 Jun 24 23:14 runpilot2-wrapper.sh
[2025-06-25 02:19:43] -rw-r--r-- 1 boinc boinc       100 Jun 25 00:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-25 02:19:43] -rwxr-xr-x 1 boinc boinc      7986 Jun 25 00:47 run_atlas
[2025-06-25 02:19:43] -rw-r--r-- 1 boinc boinc       105 Jun 25 00:47 job.xml
[2025-06-25 02:19:43] -rw-r--r-- 2 boinc boinc 286836845 Jun 25 00:47 EVNT.45275317._000304.pool.root.1
[2025-06-25 02:19:43] -rw-r--r-- 2 boinc boinc    542881 Jun 25 00:47 input.tar.gz
[2025-06-25 02:19:43] -rw-r--r-- 2 boinc boinc     15095 Jun 25 00:47 start_atlas.sh
[2025-06-25 02:19:43] drwxrwx--x 2 boinc boinc      4096 Jun 25 00:47 shared
[2025-06-25 02:19:43] -rw-r--r-- 1 boinc boinc         0 Jun 25 00:47 boinc_setup_complete
[2025-06-25 02:19:43] -rw-r--r-- 1 boinc boinc      6455 Jun 25 00:47 init_data.xml
[2025-06-25 02:19:43] -rw-r--r-- 1 boinc boinc         0 Jun 25 00:47 boinc_lockfile
[2025-06-25 02:19:43] -rw-r--r-- 1 boinc boinc      2551 Jun 25 00:47 pandaJob.out
[2025-06-25 02:19:43] -rw------- 1 boinc boinc    963178 Jun 25 00:47 agis_schedconf.cvmfs.json
[2025-06-25 02:19:43] -rw------- 1 boinc boinc   1576790 Jun 25 00:47 agis_ddmendpoints.agis.ALL.json
[2025-06-25 02:19:43] drwx------ 4 boinc boinc      4096 Jun 25 00:47 pilot3
[2025-06-25 02:19:43] -rw-r--r-- 1 boinc boinc       529 Jun 25 02:18 boinc_task_state.xml
[2025-06-25 02:19:43] -rw------- 1 boinc boinc 234903834 Jun 25 02:18 HITS.45275320._007685.pool.root.1
[2025-06-25 02:19:43] -rw------- 1 boinc boinc      1022 Jun 25 02:19 memory_monitor_summary.json
[2025-06-25 02:19:43] -rw------- 1 boinc boinc    245464 Jun 25 02:19 log.45275320._007685.job.log.tgz.1
[2025-06-25 02:19:43] -rw------- 1 boinc boinc      7760 Jun 25 02:19 heartbeat.json
[2025-06-25 02:19:43] -rw-r--r-- 1 boinc boinc      8192 Jun 25 02:19 boinc_mmap_file
[2025-06-25 02:19:43] -rw-r--r-- 1 boinc boinc        27 Jun 25 02:19 wrapper_checkpoint.txt
[2025-06-25 02:19:43] -rw------- 1 boinc boinc       745 Jun 25 02:19 pilotlog.txt
[2025-06-25 02:19:43] -rw------- 1 boinc boinc        95 Jun 25 02:19 pilot_heartbeat.json
[2025-06-25 02:19:43] -rw------- 1 boinc boinc    527142 Jun 25 02:19 log.45275320._007685.job.log.1
[2025-06-25 02:19:43] -rw------- 1 boinc boinc       357 Jun 25 02:19 output.list
[2025-06-25 02:19:43] -rw-r--r-- 1 boinc boinc       620 Jun 25 02:19 runtime_log
[2025-06-25 02:19:43] -rw------- 1 boinc boinc    788480 Jun 25 02:19 result.tar.gz
[2025-06-25 02:19:43] -rw-r--r-- 1 boinc boinc      8734 Jun 25 02:19 runtime_log.err
[2025-06-25 02:19:43] -rw------- 1 boinc boinc       659 Jun 25 02:19 qbFODm88Po7n9Rq4apOajLDm4fhM0noT9bVof3QYDmgriKDmiEoVGm.diag
[2025-06-25 02:19:43] -rw-r--r-- 1 boinc boinc     21689 Jun 25 02:19 stderr.txt
[2025-06-25 02:19:43] HITS file was successfully produced:
[2025-06-25 02:19:43] -rw------- 1 boinc boinc 234903834 Jun 25 02:18 shared/HITS.pool.root.1
[2025-06-25 02:19:43]  *** Contents of shared directory: ***
[2025-06-25 02:19:43] total 510844
[2025-06-25 02:19:43] -rw-r--r-- 2 boinc boinc 286836845 Jun 25 00:47 ATLAS.root_0
[2025-06-25 02:19:43] -rw-r--r-- 2 boinc boinc    542881 Jun 25 00:47 input.tar.gz
[2025-06-25 02:19:43] -rw-r--r-- 2 boinc boinc     15095 Jun 25 00:47 start_atlas.sh
[2025-06-25 02:19:43] -rw------- 1 boinc boinc 234903834 Jun 25 02:18 HITS.pool.root.1
[2025-06-25 02:19:43] -rw------- 1 boinc boinc    788480 Jun 25 02:19 result.tar.gz
02:19:45 (42342): run_atlas exited; CPU time 20737.361828
02:19:45 (42342): called boinc_finish(0)

</stderr_txt>
]]>

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