Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-20 04:55:55 (25724): Detected: vboxwrapper 26206
2025-06-20 04:55:55 (25724): Detected: BOINC client v8.0.2
2025-06-20 04:55:55 (25724): Detected: VirtualBox VboxManage Interface (Version: 7.1.10)
2025-06-20 04:55:55 (25724): Successfully copied 'init_data.xml' to the shared directory.
2025-06-20 04:55:56 (25724): Create VM. (boinc_f57d97afdc25356f, slot#5)
2025-06-20 04:55:57 (25724): Setting Memory Size for VM. (4800MB)
2025-06-20 04:55:59 (25724): Setting CPU Count for VM. (8)
2025-06-20 04:56:12 (25724): Setting Chipset Options for VM.
2025-06-20 04:56:14 (25724): Setting Graphics Controller Options for VM.
2025-06-20 04:56:25 (25724): Setting Boot Options for VM.
2025-06-20 04:56:26 (25724): Setting Network Configuration for NAT.
2025-06-20 04:56:43 (25724): Enabling VM Network Access.
2025-06-20 04:56:44 (25724): Disabling USB Support for VM.
2025-06-20 04:56:44 (25724): Disabling COM Port Support for VM.
2025-06-20 04:56:44 (25724): Disabling LPT Port Support for VM.
2025-06-20 04:56:45 (25724): Disabling Audio Support for VM.
2025-06-20 04:56:45 (25724): Disabling Clipboard Support for VM.
2025-06-20 04:56:45 (25724): Disabling Drag and Drop Support for VM.
2025-06-20 04:56:45 (25724): Adding storage controller(s) to VM.
2025-06-20 04:56:46 (25724): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-20 04:56:46 (25724): Adding VirtualBox Guest Additions to VM.
2025-06-20 04:56:47 (25724): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-20 04:56:47 (25724): forwarding host port 61200 to guest port 80
2025-06-20 04:56:47 (25724): Enabling remote desktop for VM.
2025-06-20 04:56:47 (25724): Required extension pack not installed, remote desktop not enabled.
2025-06-20 04:56:47 (25724): Enabling shared directory for VM.
2025-06-20 04:56:48 (25724): Starting VM using VBoxManage interface. (boinc_f57d97afdc25356f, slot#5)
2025-06-20 04:56:52 (25724): Successfully started VM. (PID = '3528')
2025-06-20 04:56:52 (25724): Reporting VM Process ID to BOINC.
2025-06-20 04:56:52 (25724): Guest Log: BIOS: VirtualBox 7.1.10
2025-06-20 04:56:52 (25724): Guest Log: CPUID EDX: 0x178bfbff
2025-06-20 04:56:52 (25724): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-20 04:56:52 (25724): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-20 04:56:52 (25724): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-20 04:56:52 (25724): Detected: Web Application Enabled (http://localhost:61200)
2025-06-20 04:56:52 (25724): Preference change detected
2025-06-20 04:56:52 (25724): Setting CPU throttle for VM. (100%)
2025-06-20 04:56:52 (25724): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-20 04:56:54 (25724): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-20 04:56:54 (25724): Guest Log: BIOS: Booting from Hard Disk...
2025-06-20 04:57:15 (25724): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-20 04:57:15 (25724): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-20 04:57:15 (25724): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-20 04:58:29 (25724): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-20 04:58:29 (25724): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-20 05:01:29 (25724): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-20 05:01:29 (25724): Guest Log: 00:00:00.000053 main     Log opened 2025-06-20T05:01:33.454637000Z
2025-06-20 05:01:29 (25724): Guest Log: 00:00:00.000108 main     OS Product: Linux
2025-06-20 05:01:29 (25724): Guest Log: 00:00:00.000119 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-20 05:01:29 (25724): Guest Log: 00:00:00.000132 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-20 05:01:29 (25724): Guest Log: 00:00:00.000142 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-20 05:01:29 (25724): Guest Log: 00:00:00.000142 main     Process ID: 1432
2025-06-20 05:01:29 (25724): Guest Log: 00:00:00.000143 main     Package type: LINUX_64BITS_GENERIC
2025-06-20 05:01:29 (25724): Guest Log: 00:00:00.000505 main     5.2.32 r132073 started. Verbose level = 0
2025-06-20 05:01:32 (25724): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-20 05:01:32 (25724): Guest Log: [INFO] Mounting shared directory
2025-06-20 05:01:32 (25724): Guest Log: [INFO] Checking for init_data.xml
2025-06-20 05:01:38 (25724): Guest Log: 00:00:10.003189 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 212 907 716 000ns (GuestNow=1 750 388 480 547 871 000 ns GuestLast=1 750 395 693 455 587 000 ns fSetTimeLastLoop=true )
2025-06-20 05:01:40 (25724): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-20 05:01:40 (25724): Guest Log: [INFO] Detected branch: prod
2025-06-20 05:01:40 (25724): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-20 05:01:40 (25724): Guest Log: Copying input files
2025-06-20 05:01:41 (25724): Guest Log: Copied input files into RunAtlas.
2025-06-20 05:01:41 (25724): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-20 05:01:41 (25724): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-20 05:01:41 (25724): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-20 05:01:41 (25724): Guest Log: Further information can be found at the LHC@home message board.
2025-06-20 05:01:50 (25724): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-20 05:01:51 (25724): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-20 05:01:51 (25724): Guest Log: 2.6.3.0 1708 0 30168 147360 3 1 3117618 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-06-20 05:02:10 (25724): Guest Log: copied the webapp to /var/www
2025-06-20 05:02:10 (25724): Guest Log: ATHENA_PROC_NUMBER=8
2025-06-20 05:02:10 (25724): Guest Log: ATHENA_CORE_NUMBER=8
2025-06-20 05:02:10 (25724): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-20 05:02:10 (25724): Guest Log:  *** Starting ATLAS job. (PandaID=6700231287 taskID=45275341) ***
2025-06-20 06:16:07 (25724): Guest Log:  *** Job finished ***
2025-06-20 06:16:07 (25724): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-20 06:16:07 (25724): Guest Log: 2025-06-20 04:17:14,570 | INFO     | end of generic workflow (traces error code: 0)
2025-06-20 06:16:07 (25724): Guest Log: 2025-06-20 04:17:14,570 | INFO     | traces error code: 0
2025-06-20 06:16:07 (25724): Guest Log: 2025-06-20 04:17:14,570 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-20 06:16:07 (25724): Guest Log: 2025-06-20 04:17:33,697 | INFO     | PID=6047 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-06-20 06:16:07 (25724): Guest Log: 2025-06-20 04:17:33,698 | INFO     | found 0 job(s) in 20 queues
2025-06-20 06:16:07 (25724): Guest Log: 2025-06-20 04:17:33,698 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-06-20 06:16:07 (25724): Guest Log: 2025-06-20 04:17:33,698 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-06-20 06:16:07 (25724): Guest Log: 2025-06-20 04:17:33,698 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-20 06:16:07 (25724): Guest Log: 2025-06-20 04:17:33,698 | CRITICAL | thread 'MainThread' is not alive
2025-06-20 06:16:07 (25724): Guest Log: 2025-06-20 04:17:33,698 | INFO     | [monitor] control thread has ended
2025-06-20 06:16:07 (25724): Guest Log: 2025-06-20 04:17:33,981 [wrapper] ==== pilot stdout END ====
2025-06-20 06:16:07 (25724): Guest Log: 2025-06-20 04:17:33,984 [wrapper] ==== wrapper stdout RESUME ====
2025-06-20 06:16:07 (25724): Guest Log: 2025-06-20 04:17:33,987 [wrapper] pilotpid: 6047
2025-06-20 06:16:07 (25724): Guest Log: 2025-06-20 04:17:33,990 [wrapper] Pilot exit status: 0
2025-06-20 06:16:07 (25724): Guest Log: 2025-06-20 04:17:34,191 [wrapper] pandaids: 6700231287
2025-06-20 06:16:07 (25724): Guest Log: 2025-06-20 04:17:34,209 [wrapper] cleanup supervisor_pilot 31165 6048
2025-06-20 06:16:07 (25724): Guest Log: 2025-06-20 04:17:34,212 [wrapper] Test setup, not cleaning
2025-06-20 06:16:07 (25724): Guest Log: 2025-06-20 04:17:34,215 [wrapper] apfmon messages muted
2025-06-20 06:16:07 (25724): Guest Log: 2025-06-20 04:17:34,217 [wrapper] ==== wrapper stdout END ====
2025-06-20 06:16:07 (25724): Guest Log: 2025-06-20 04:17:34,220 [wrapper] ==== wrapper stderr END ====
2025-06-20 06:16:07 (25724): Guest Log:  *** Error codes and diagnostics ***
2025-06-20 06:16:07 (25724): Guest Log:     "exeErrorCode": 0,
2025-06-20 06:16:07 (25724): Guest Log:     "exeErrorDiag": "",
2025-06-20 06:16:07 (25724): Guest Log:     "pilotErrorCode": 0,
2025-06-20 06:16:07 (25724): Guest Log:     "pilotErrorDiag": "",
2025-06-20 06:16:07 (25724): Guest Log:  *** Listing of results directory ***
2025-06-20 06:16:07 (25724): Guest Log: total 248488
2025-06-20 06:16:07 (25724): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jun 19 23:45 pilot3.tar.gz
2025-06-20 06:16:07 (25724): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jun 20 00:05 queuedata.json
2025-06-20 06:16:07 (25724): Guest Log: -rwx------. 1 atlas atlas     36245 Jun 20 00:06 runpilot2-wrapper.sh
2025-06-20 06:16:07 (25724): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jun 20 03:01 start_atlas.sh
2025-06-20 06:16:07 (25724): Guest Log: -rwxr-xr-x. 1 atlas atlas    542870 Jun 20 03:01 input.tar.gz
2025-06-20 06:16:07 (25724): Guest Log: -rwxr-xr-x. 1 atlas atlas      9129 Jun 20 03:01 init_data.xml
2025-06-20 06:16:07 (25724): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 20 03:01 EVNT.45275338._000136.pool.root.1 -> /data/./ATLAS.root_0
2025-06-20 06:16:07 (25724): Guest Log: -rw-r--r--. 1 atlas atlas      2487 Jun 20 03:01 pandaJob.out
2025-06-20 06:16:07 (25724): Guest Log: -rw-------. 1 atlas atlas    967801 Jun 20 03:03 agis_schedconf.cvmfs.json
2025-06-20 06:16:07 (25724): Guest Log: -rw-------. 1 atlas atlas   1582103 Jun 20 03:03 agis_ddmendpoints.agis.ALL.json
2025-06-20 06:16:07 (25724): Guest Log: drwx------. 4 atlas atlas      4096 Jun 20 03:03 pilot3
2025-06-20 06:16:07 (25724): Guest Log: -rw-------. 1 atlas atlas 249249314 Jun 20 04:16 HITS.45275341._003615.pool.root.1
2025-06-20 06:16:07 (25724): Guest Log: -rw-------. 1 atlas atlas      1027 Jun 20 04:16 memory_monitor_summary.json
2025-06-20 06:16:07 (25724): Guest Log: -rw-------. 1 atlas atlas    300138 Jun 20 04:16 log.45275341._003615.job.log.tgz.1
2025-06-20 06:16:07 (25724): Guest Log: -rw-------. 1 atlas atlas      7756 Jun 20 04:17 heartbeat.json
2025-06-20 06:16:07 (25724): Guest Log: -rw-------. 1 atlas atlas        95 Jun 20 04:17 pilot_heartbeat.json
2025-06-20 06:16:07 (25724): Guest Log: -rw-------. 1 atlas atlas       814 Jun 20 04:17 pilotlog.txt
2025-06-20 06:16:07 (25724): Guest Log: -rw-------. 1 atlas atlas    406605 Jun 20 04:17 log.45275341._003615.job.log.1
2025-06-20 06:16:07 (25724): Guest Log: -rw-------. 1 atlas atlas       357 Jun 20 04:17 output.list
2025-06-20 06:16:07 (25724): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 20 04:17 runtime_log
2025-06-20 06:16:07 (25724): Guest Log: -rw-------. 1 atlas atlas    727040 Jun 20 04:17 result.tar.gz
2025-06-20 06:16:07 (25724): Guest Log: -rw-------. 1 atlas atlas       648 Jun 20 04:17 VIzKDmwRem7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOnsKDmGNz5Qn.diag
2025-06-20 06:16:07 (25724): Guest Log: -rw-r--r--. 1 atlas atlas      8571 Jun 20 04:17 runtime_log.err
2025-06-20 06:16:07 (25724): Guest Log: Looking for outputfile HITS.45275341._003615.pool.root.1
2025-06-20 06:16:07 (25724): Guest Log: HITS file was successfully produced
2025-06-20 06:16:07 (25724): Guest Log: -rw-------. 1 atlas atlas 249249314 Jun 20 04:16 /home/atlas/RunAtlas/HITS.45275341._003615.pool.root.1
2025-06-20 06:16:11 (25724): Guest Log: Successfully finished the ATLAS job!
2025-06-20 06:16:11 (25724): Guest Log: Copying the results back to the shared directory!
2025-06-20 06:16:11 (25724): Guest Log:  *** Contents of shared directory: ***
2025-06-20 06:16:11 (25724): Guest Log: total 543684
2025-06-20 06:16:11 (25724): Guest Log: -rwxrwxrwx. 1 root root 306178268 Jun 20 02:55 ATLAS.root_0
2025-06-20 06:16:11 (25724): Guest Log: -rwxrwxrwx. 1 root root 249249314 Jun 20 04:16 HITS.pool.root.1
2025-06-20 06:16:11 (25724): Guest Log: -rwxrwxrwx. 1 root root      9129 Jun 20 02:55 init_data.xml
2025-06-20 06:16:11 (25724): Guest Log: -rwxrwxrwx. 1 root root    542870 Jun 20 02:55 input.tar.gz
2025-06-20 06:16:11 (25724): Guest Log: -rwxrwxrwx. 1 root root    727040 Jun 20 04:16 result.tar.gz
2025-06-20 06:16:11 (25724): Guest Log: -rwxrwxrwx. 1 root root     15095 Jun 20 02:55 start_atlas.sh
2025-06-20 06:16:11 (25724): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-20 06:16:11 (25724): VM Completion File Detected.
2025-06-20 06:16:11 (25724): Powering off VM.
2025-06-20 06:16:11 (25724): Successfully stopped VM.
2025-06-20 06:16:11 (25724): Deregistering VM. (boinc_f57d97afdc25356f, slot#5)
2025-06-20 06:16:11 (25724): Removing network bandwidth throttle group from VM.
2025-06-20 06:16:11 (25724): Removing VM from VirtualBox.
06:16:17 (25724): called boinc_finish(0)

</stderr_txt>
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