Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:44:28 (32419): wrapper (7.7.26015): starting
20:44:28 (32419): wrapper: running run_atlas (--nthreads 8)
[2025-06-19 20:44:28] Arguments: --nthreads 8
[2025-06-19 20:44:28] Threads: 8
[2025-06-19 20:44:28] Checking for CVMFS
[2025-06-19 20:44:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-19 20:44:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-19 20:44:29] Running cvmfs_config stat atlas.cern.ch
[2025-06-19 20:44:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-19 20:44:29] 2.11.2.0 3213 462955 244280 147357 0 56 13721732 20275201 917 130560 0 136312451 99.991 20444563 18795 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-19 20:44:29] CVMFS is ok
[2025-06-19 20:44:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-19 20:44:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-19 20:44:29] Further information can be found at the LHC@home message board.
[2025-06-19 20:44:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-19 20:44:29] Checking for apptainer binary...
[2025-06-19 20:44:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-19 20:44:29] Running /usr/bin/apptainer --version
[2025-06-19 20:44:29] apptainer version 1.3.2-1.el7
[2025-06-19 20:44:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-19 20:44:29] c-205-38.aglt2.org
[2025-06-19 20:44:29] apptainer works
[2025-06-19 20:44:29] Set ATHENA_PROC_NUMBER=8
[2025-06-19 20:44:29] Set ATHENA_CORE_NUMBER=8
[2025-06-19 20:44:29] Starting ATLAS job with PandaID=6700201744
[2025-06-19 20:44:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-19 21:53:52]  *** The last 200 lines of the pilot log: ***
[2025-06-19 21:53:52]  mtime=0
[2025-06-19 21:53:52]  protocol_id=None
[2025-06-19 21:53:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-19 21:53:52]  replicas=None
[2025-06-19 21:53:52]  scope=mc23_13p6TeV
[2025-06-19 21:53:52]  status=None
[2025-06-19 21:53:52]  status_code=0
[2025-06-19 21:53:52]  storage_token=
[2025-06-19 21:53:52]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6700201744/log.45275320._005092.job.log.tgz.1
[2025-06-19 21:53:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/06/9c/log.45275320._005092.job.log.tgz.1
[2025-06-19 21:53:52]  workdir=None
[2025-06-19 21:53:52] ]
[2025-06-19 21:53:52] 2025-06-20 01:53:14,717 | INFO     | transferring file log.45275320._005092.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6700201744/log.45275320._005092.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-19 21:53:52] 2025-06-20 01:53:14,717 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6700201744/log.45275320._005092.job.log.tgz.1 /tmp/boinchome/slots/0/log.45275320._005092.job
[2025-06-19 21:53:52] 2025-06-20 01:53:14,734 | INFO     | adding to output.list: log.45275320._005092.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/06/9c/log.45275320._005092.job.log.tg
[2025-06-19 21:53:52] 2025-06-20 01:53:14,735 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-19 21:53:52] 2025-06-20 01:53:14,735 | INFO     | summary of transferred files:
[2025-06-19 21:53:52] 2025-06-20 01:53:14,735 | INFO     |  -- lfn=log.45275320._005092.job.log.tgz.1, status_code=0, status=transferred
[2025-06-19 21:53:52] 2025-06-20 01:53:14,735 | INFO     | stage-out finished correctly
[2025-06-19 21:53:52] 2025-06-20 01:53:14,784 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-19 21:53:52] 2025-06-20 01:53:15,042 | INFO     | 4120s have passed since pilot start - server update state is 'RUNNING'
[2025-06-19 21:53:52] 2025-06-20 01:53:16,755 | INFO     | job 6700201744 has state=finished
[2025-06-19 21:53:52] 2025-06-20 01:53:16,756 | INFO     | preparing for final server update for job 6700201744 in state='finished'
[2025-06-19 21:53:52] 2025-06-20 01:53:16,757 | INFO     | this job has now completed (state=finished)
[2025-06-19 21:53:52] 2025-06-20 01:53:16,757 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-19 21:53:52] 2025-06-20 01:53:16,757 | INFO     | log transfer has been attempted: DONE
[2025-06-19 21:53:52] 2025-06-20 01:53:16,757 | INFO     | job 6700201744 has finished - writing final server update
[2025-06-19 21:53:52] 2025-06-20 01:53:16,757 | INFO     | total number of processed events: 400 (read)
[2025-06-19 21:53:52] 2025-06-20 01:53:16,758 | INFO     | executing command: lscpu
[2025-06-19 21:53:52] 2025-06-20 01:53:16,788 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-19 21:53:52] 2025-06-20 01:53:16,838 | INFO     | monitor loop #310: job 0:6700201744 is in state 'finished'
[2025-06-19 21:53:52] 2025-06-20 01:53:16,839 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-19 21:53:52] 2025-06-20 01:53:19,341 | INFO     | monitor loop #311: job 0:6700201744 is in state 'finished'
[2025-06-19 21:53:52] 2025-06-20 01:53:19,341 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-19 21:53:52] 2025-06-20 01:53:19,717 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-19 21:53:52] 2025-06-20 01:53:19,721 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2729.1499375
[2025-06-19 21:53:52] 2025-06-20 01:53:19,724 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6700201744/memory_monitor_summary.json (trf name=prmon)
[2025-06-19 21:53:52] 2025-06-20 01:53:19,725 | INFO     | extracted standard info from prmon json
[2025-06-19 21:53:52] 2025-06-20 01:53:19,725 | INFO     | extracted standard memory fields from prmon json
[2025-06-19 21:53:52] 2025-06-20 01:53:19,725 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-19 21:53:52] 2025-06-20 01:53:19,726 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-19 21:53:52] 2025-06-20 01:53:19,726 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-19 21:53:52] 2025-06-20 01:53:19,727 | INFO     | fitting pss+swap vs Time
[2025-06-19 21:53:52] 2025-06-20 01:53:19,728 | INFO     | sum of square deviations: 70364110.0
[2025-06-19 21:53:52] 2025-06-20 01:53:19,728 | INFO     | sum of deviations: -5732734859.999998
[2025-06-19 21:53:52] 2025-06-20 01:53:19,728 | INFO     | mean x: 1750382433.0
[2025-06-19 21:53:52] 2025-06-20 01:53:19,728 | INFO     | mean y: 2641931.704918033
[2025-06-19 21:53:52] 2025-06-20 01:53:19,728 | INFO     | -- intersect: 142610548035.97757
[2025-06-19 21:53:52] 2025-06-20 01:53:19,728 | INFO     | intersect: 142610548035.97757
[2025-06-19 21:53:52] 2025-06-20 01:53:19,729 | INFO     | chi2: 0.02267135159651317
[2025-06-19 21:53:52] 2025-06-20 01:53:19,729 | INFO     | -- intersect: 142610548035.97757
[2025-06-19 21:53:52] 2025-06-20 01:53:19,729 | INFO     | current memory leak: -81.47 B/s (using 61 data points, chi2=0.02)
[2025-06-19 21:53:52] 2025-06-20 01:53:19,729 | INFO     | could have reported an average CPU frequency of 3040 MHz (6 samples)
[2025-06-19 21:53:52] 2025-06-20 01:53:19,729 | INFO     | ..............................
[2025-06-19 21:53:52] 2025-06-20 01:53:19,730 | INFO     | . Timing measurements:
[2025-06-19 21:53:52] 2025-06-20 01:53:19,730 | INFO     | . get job = 0 s
[2025-06-19 21:53:52] 2025-06-20 01:53:19,730 | INFO     | . initial setup = 2 s
[2025-06-19 21:53:52] 2025-06-20 01:53:19,730 | INFO     | . payload setup = 4 s
[2025-06-19 21:53:52] 2025-06-20 01:53:19,730 | INFO     | . stage-in = 0 s
[2025-06-19 21:53:52] 2025-06-20 01:53:19,730 | INFO     | . payload execution = 4095 s
[2025-06-19 21:53:52] 2025-06-20 01:53:19,730 | INFO     | . stage-out = 0 s
[2025-06-19 21:53:52] 2025-06-20 01:53:19,730 | INFO     | . log creation = 0 s
[2025-06-19 21:53:52] 2025-06-20 01:53:19,730 | INFO     | ..............................
[2025-06-19 21:53:52] 2025-06-20 01:53:19,973 | INFO     | 
[2025-06-19 21:53:52] 2025-06-20 01:53:19,973 | INFO     | job summary report
[2025-06-19 21:53:52] 2025-06-20 01:53:19,973 | INFO     | --------------------------------------------------
[2025-06-19 21:53:52] 2025-06-20 01:53:19,973 | INFO     | PanDA job id: 6700201744
[2025-06-19 21:53:52] 2025-06-20 01:53:19,973 | INFO     | task id: 45275320
[2025-06-19 21:53:52] 2025-06-20 01:53:19,973 | INFO     | errors: (none)
[2025-06-19 21:53:52] 2025-06-20 01:53:19,974 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-19 21:53:52] 2025-06-20 01:53:19,974 | INFO     | pilot state: finished 
[2025-06-19 21:53:52] 2025-06-20 01:53:19,974 | INFO     | transexitcode: 0
[2025-06-19 21:53:52] 2025-06-20 01:53:19,974 | INFO     | exeerrorcode: 0
[2025-06-19 21:53:52] 2025-06-20 01:53:19,974 | INFO     | exeerrordiag: 
[2025-06-19 21:53:52] 2025-06-20 01:53:19,974 | INFO     | exitcode: 0
[2025-06-19 21:53:52] 2025-06-20 01:53:19,974 | INFO     | exitmsg: OK
[2025-06-19 21:53:52] 2025-06-20 01:53:19,974 | INFO     | cpuconsumptiontime: 30215 s
[2025-06-19 21:53:52] 2025-06-20 01:53:19,974 | INFO     | nevents: 400
[2025-06-19 21:53:52] 2025-06-20 01:53:19,975 | INFO     | neventsw: 0
[2025-06-19 21:53:52] 2025-06-20 01:53:19,975 | INFO     | pid: 10154
[2025-06-19 21:53:52] 2025-06-20 01:53:19,975 | INFO     | pgrp: 10154
[2025-06-19 21:53:52] 2025-06-20 01:53:19,975 | INFO     | corecount: 8
[2025-06-19 21:53:52] 2025-06-20 01:53:19,975 | INFO     | event service: False
[2025-06-19 21:53:52] 2025-06-20 01:53:19,975 | INFO     | sizes: {0: 2376911, 3: 2377173, 11: 2377201, 4103: 2403205, 4104: 2412259, 4109: 2412397}
[2025-06-19 21:53:52] 2025-06-20 01:53:19,975 | INFO     | --------------------------------------------------
[2025-06-19 21:53:52] 2025-06-20 01:53:19,975 | INFO     | 
[2025-06-19 21:53:52] 2025-06-20 01:53:19,976 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-19 21:53:52] 2025-06-20 01:53:19,994 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-19 21:53:52] 2025-06-20 01:53:19,995 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-19 21:53:52] 2025-06-20 01:53:19,995 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-19 21:53:52] 2025-06-20 01:53:19,995 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-19 21:53:52] 2025-06-20 01:53:19,995 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-19 21:53:52] 2025-06-20 01:53:19,995 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-19 21:53:52] 2025-06-20 01:53:19,995 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-19 21:53:52] 2025-06-20 01:53:19,995 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-19 21:53:52] 2025-06-20 01:53:19,995 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-19 21:53:52] 2025-06-20 01:53:19,996 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-19 21:53:52] 2025-06-20 01:53:19,996 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-19 21:53:52] 2025-06-20 01:53:19,996 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-19 21:53:52] 2025-06-20 01:53:19,996 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-19 21:53:52] 2025-06-20 01:53:19,996 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-19 21:53:52] 2025-06-20 01:53:19,996 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-19 21:53:52] 2025-06-20 01:53:19,996 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-19 21:53:52] 2025-06-20 01:53:19,996 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-19 21:53:52] 2025-06-20 01:53:19,996 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-19 21:53:52] 2025-06-20 01:53:19,997 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-19 21:53:52] 2025-06-20 01:53:19,997 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-19 21:53:52] 2025-06-20 01:53:19,997 | INFO     | job 6700201744 has completed (purged errors)
[2025-06-19 21:53:52] 2025-06-20 01:53:19,997 | INFO     | overall cleanup function is called
[2025-06-19 21:53:52] 2025-06-20 01:53:21,005 | INFO     | --- collectZombieJob: --- 10, [10154]
[2025-06-19 21:53:52] 2025-06-20 01:53:21,005 | INFO     | zombie collector waiting for pid 10154
[2025-06-19 21:53:52] 2025-06-20 01:53:21,005 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-19 21:53:52] 2025-06-20 01:53:21,005 | INFO     | collected zombie processes
[2025-06-19 21:53:52] 2025-06-20 01:53:21,005 | INFO     | will attempt to kill all subprocesses of pid=10154
[2025-06-19 21:53:52] 2025-06-20 01:53:21,097 | INFO     | process IDs to be killed: [10154] (in reverse order)
[2025-06-19 21:53:52] 2025-06-20 01:53:21,138 | WARNING  | found no corresponding commands to process id(s)
[2025-06-19 21:53:52] 2025-06-20 01:53:21,138 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-19 21:53:52] 2025-06-20 01:53:21,141 | INFO     | did not find any defunct processes belonging to 10154
[2025-06-19 21:53:52] 2025-06-20 01:53:21,143 | INFO     | did not find any defunct processes belonging to 10154
[2025-06-19 21:53:52] 2025-06-20 01:53:21,143 | INFO     | ready for new job
[2025-06-19 21:53:52] 2025-06-20 01:53:21,143 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-19 21:53:52] 2025-06-20 01:53:21,144 | INFO     | ***************************************
[2025-06-19 21:53:52] 2025-06-20 01:53:21,145 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-06-19 21:53:52] 2025-06-20 01:53:21,145 | INFO     | ***************************************
[2025-06-19 21:53:52] 2025-06-20 01:53:21,145 | INFO     | 
[2025-06-19 21:53:52] 2025-06-20 01:53:21,146 | INFO     | architecture information:
[2025-06-19 21:53:52] 2025-06-20 01:53:21,146 | INFO     | executing command: cat /etc/os-release
[2025-06-19 21:53:52] 2025-06-20 01:53:21,158 | INFO     | cat /etc/os-release:
[2025-06-19 21:53:52] NAME="CentOS Linux"
[2025-06-19 21:53:52] VERSION="7 (Core)"
[2025-06-19 21:53:52] ID="centos"
[2025-06-19 21:53:52] ID_LIKE="rhel fedora"
[2025-06-19 21:53:52] VERSION_ID="7"
[2025-06-19 21:53:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-19 21:53:52] ANSI_COLOR="0;31"
[2025-06-19 21:53:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-19 21:53:52] HOME_URL="https://www.centos.org/"
[2025-06-19 21:53:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-19 21:53:52] 
[2025-06-19 21:53:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-19 21:53:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-19 21:53:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-19 21:53:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-19 21:53:52] 
[2025-06-19 21:53:52] 2025-06-20 01:53:21,158 | INFO     | ***************************************
[2025-06-19 21:53:52] 2025-06-20 01:53:21,661 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-19 21:53:52] 2025-06-20 01:53:21,675 | INFO     | sufficient remaining disk space (32301383680 B)
[2025-06-19 21:53:52] 2025-06-20 01:53:21,675 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-19 21:53:52] 2025-06-20 01:53:21,676 | INFO     | current server update state: UPDATING_FINAL
[2025-06-19 21:53:52] 2025-06-20 01:53:21,676 | INFO     | update_server=False
[2025-06-19 21:53:52] 2025-06-20 01:53:21,676 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-19 21:53:52] 2025-06-20 01:53:21,676 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-19 21:53:52] 2025-06-20 01:53:21,676 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-19 21:53:52] 2025-06-20 01:53:21,780 | INFO     | all data control threads have been joined
[2025-06-19 21:53:52] 2025-06-20 01:53:21,844 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-19 21:53:52] 2025-06-20 01:53:21,845 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-19 21:53:52] 2025-06-20 01:53:21,845 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-19 21:53:52] 2025-06-20 01:53:21,845 | INFO     | will abort loop
[2025-06-19 21:53:52] 2025-06-20 01:53:22,004 | INFO     | all payload control threads have been joined
[2025-06-19 21:53:52] 2025-06-20 01:53:22,681 | INFO     | [job] retrieve thread has finished
[2025-06-19 21:53:52] 2025-06-20 01:53:22,682 | INFO     | [job] queue monitor thread has finished
[2025-06-19 21:53:52] 2025-06-20 01:53:22,696 | INFO     | [payload] validate_post thread has finished
[2025-06-19 21:53:52] 2025-06-20 01:53:22,708 | INFO     | all job control threads have been joined
[2025-06-19 21:53:52] 2025-06-20 01:53:22,754 | INFO     | [payload] validate_pre thread has finished
[2025-06-19 21:53:52] 2025-06-20 01:53:22,786 | INFO     | [data] control thread has finished
[2025-06-19 21:53:52] 2025-06-20 01:53:22,799 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-19 21:53:52] 2025-06-20 01:53:22,850 | INFO     | [job] job monitor thread has finished
[2025-06-19 21:53:52] 2025-06-20 01:53:22,958 | INFO     | [payload] failed_post thread has finished
[2025-06-19 21:53:52] 2025-06-20 01:53:23,009 | INFO     | [payload] control thread has finished
[2025-06-19 21:53:52] 2025-06-20 01:53:23,614 | INFO     | [payload] execute_payloads thread has finished
[2025-06-19 21:53:52] 2025-06-20 01:53:23,713 | INFO     | [job] control thread has finished
[2025-06-19 21:53:52] 2025-06-20 01:53:23,956 | INFO     | [data] copytool_in thread has finished
[2025-06-19 21:53:52] 2025-06-20 01:53:23,964 | INFO     | [job] validate thread has finished
[2025-06-19 21:53:52] 2025-06-20 01:53:24,067 | INFO     | [job] create_data_payload thread has finished
[2025-06-19 21:53:52] 2025-06-20 01:53:24,805 | INFO     | [data] copytool_out thread has finished
[2025-06-19 21:53:52] 2025-06-20 01:53:25,681 | INFO     | [data] queue_monitor thread has finished
[2025-06-19 21:53:52] 2025-06-20 01:53:31,866 | INFO     | job.realtimelogging is not enabled
[2025-06-19 21:53:52] 2025-06-20 01:53:32,870 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-19 21:53:52] 2025-06-20 01:53:33,921 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140487104726848)>', '<ExcThread(monitor, started 140486366983936)>']
[2025-06-19 21:53:52] 2025-06-20 01:53:38,946 | INFO     | all workflow threads have been joined
[2025-06-19 21:53:52] 2025-06-20 01:53:38,946 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-19 21:53:52] 2025-06-20 01:53:38,947 | INFO     | traces error code: 0
[2025-06-19 21:53:52] 2025-06-20 01:53:38,947 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-19 21:53:52] 2025-06-20 01:53:52,243 | INFO     | PID=3721 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-19 21:53:52] 2025-06-20 01:53:52,243 | INFO     | .. there are 2 such processes running
[2025-06-19 21:53:52] 2025-06-20 01:53:52,243 | INFO     | found 0 job(s) in 20 queues
[2025-06-19 21:53:52] 2025-06-20 01:53:52,243 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-19 21:53:52] 2025-06-20 01:53:52,243 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-19 21:53:52] 2025-06-20 01:53:52,243 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-19 21:53:52] 2025-06-20 01:53:52,244 | INFO     | [monitor] control thread has ended
[2025-06-19 21:53:52] 2025-06-20 01:53:52,303 [wrapper] ==== pilot stdout END ====
[2025-06-19 21:53:52] 2025-06-20 01:53:52,306 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-19 21:53:52] 2025-06-20 01:53:52,309 [wrapper] pilotpid: 3721
[2025-06-19 21:53:52] 2025-06-20 01:53:52,312 [wrapper] Pilot exit status: 0
[2025-06-19 21:53:52] 2025-06-20 01:53:52,322 [wrapper] pandaids: 6700201744
[2025-06-19 21:53:52] 2025-06-20 01:53:52,342 [wrapper] cleanup supervisor_pilot 21776 3722
[2025-06-19 21:53:52] 2025-06-20 01:53:52,344 [wrapper] Test setup, not cleaning
[2025-06-19 21:53:52] 2025-06-20 01:53:52,347 [wrapper] apfmon messages muted
[2025-06-19 21:53:52] 2025-06-20 01:53:52,349 [wrapper] ==== wrapper stdout END ====
[2025-06-19 21:53:52] 2025-06-20 01:53:52,352 [wrapper] ==== wrapper stderr END ====
[2025-06-19 21:53:52]  *** Error codes and diagnostics ***
[2025-06-19 21:53:52]     "exeErrorCode": 0,
[2025-06-19 21:53:52]     "exeErrorDiag": "",
[2025-06-19 21:53:52]     "pilotErrorCode": 0,
[2025-06-19 21:53:52]     "pilotErrorDiag": "",
[2025-06-19 21:53:52]  *** Listing of results directory ***
[2025-06-19 21:53:52] total 520568
[2025-06-19 21:53:52] -rw-r--r-- 1 boincer umatlas      5112 Jun 19 11:37 queuedata.json
[2025-06-19 21:53:52] -rwx------ 1 boincer umatlas     36245 Jun 19 11:38 runpilot2-wrapper.sh
[2025-06-19 21:53:52] -rw-r--r-- 1 boincer umatlas    530466 Jun 19 11:38 pilot3.tar.gz
[2025-06-19 21:53:52] -rw-r--r-- 1 boincer umatlas       100 Jun 19 20:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-19 21:53:52] -rwxr-xr-x 1 boincer umatlas      7986 Jun 19 20:44 run_atlas
[2025-06-19 21:53:52] -rw-r--r-- 1 boincer umatlas       105 Jun 19 20:44 job.xml
[2025-06-19 21:53:52] -rw-r--r-- 2 boincer umatlas 289534184 Jun 19 20:44 EVNT.45275317._000212.pool.root.1
[2025-06-19 21:53:52] -rw-r--r-- 2 boincer umatlas     15095 Jun 19 20:44 start_atlas.sh
[2025-06-19 21:53:52] drwxrwx--x 2 boincer umatlas      4096 Jun 19 20:44 shared
[2025-06-19 21:53:52] -rw-r--r-- 2 boincer umatlas    542876 Jun 19 20:44 input.tar.gz
[2025-06-19 21:53:52] -rw-r--r-- 1 boincer umatlas         0 Jun 19 20:44 boinc_lockfile
[2025-06-19 21:53:52] -rw-r--r-- 1 boincer umatlas      2548 Jun 19 20:44 pandaJob.out
[2025-06-19 21:53:52] -rw------- 1 boincer umatlas    967109 Jun 19 20:44 agis_schedconf.cvmfs.json
[2025-06-19 21:53:52] -rw------- 1 boincer umatlas   1582103 Jun 19 20:44 agis_ddmendpoints.agis.ALL.json
[2025-06-19 21:53:52] drwx------ 4 boincer umatlas      4096 Jun 19 20:44 pilot3
[2025-06-19 21:53:52] -rw-r--r-- 1 boincer umatlas      6049 Jun 19 21:45 init_data.xml
[2025-06-19 21:53:52] -rw------- 1 boincer umatlas 238223253 Jun 19 21:52 HITS.45275320._005092.pool.root.1
[2025-06-19 21:53:52] -rw-r--r-- 1 boincer umatlas       529 Jun 19 21:52 boinc_task_state.xml
[2025-06-19 21:53:52] -rw------- 1 boincer umatlas      1047 Jun 19 21:53 memory_monitor_summary.json
[2025-06-19 21:53:52] -rw------- 1 boincer umatlas        95 Jun 19 21:53 pilot_heartbeat.json
[2025-06-19 21:53:52] -rw------- 1 boincer umatlas    306900 Jun 19 21:53 log.45275320._005092.job.log.tgz.1
[2025-06-19 21:53:52] -rw------- 1 boincer umatlas      7835 Jun 19 21:53 heartbeat.json
[2025-06-19 21:53:52] -rw-r--r-- 1 boincer umatlas      8192 Jun 19 21:53 boinc_mmap_file
[2025-06-19 21:53:52] -rw-r--r-- 1 boincer umatlas        27 Jun 19 21:53 wrapper_checkpoint.txt
[2025-06-19 21:53:52] -rw------- 1 boincer umatlas       819 Jun 19 21:53 pilotlog.txt
[2025-06-19 21:53:52] -rw------- 1 boincer umatlas    417711 Jun 19 21:53 log.45275320._005092.job.log.1
[2025-06-19 21:53:52] -rw------- 1 boincer umatlas       357 Jun 19 21:53 output.list
[2025-06-19 21:53:52] -rw-r--r-- 1 boincer umatlas       620 Jun 19 21:53 runtime_log
[2025-06-19 21:53:52] -rw------- 1 boincer umatlas    747520 Jun 19 21:53 result.tar.gz
[2025-06-19 21:53:52] -rw-r--r-- 1 boincer umatlas      8660 Jun 19 21:53 runtime_log.err
[2025-06-19 21:53:52] -rw------- 1 boincer umatlas       656 Jun 19 21:53 89ELDmTWWm7n9Rq4apOajLDm4fhM0noT9bVof3QYDmUSdKDmGBinnn.diag
[2025-06-19 21:53:52] -rw-r--r-- 1 boincer umatlas     21643 Jun 19 21:53 stderr.txt
[2025-06-19 21:53:52] HITS file was successfully produced:
[2025-06-19 21:53:52] -rw------- 1 boincer umatlas 238223253 Jun 19 21:52 shared/HITS.pool.root.1
[2025-06-19 21:53:52]  *** Contents of shared directory: ***
[2025-06-19 21:53:52] total 516676
[2025-06-19 21:53:52] -rw-r--r-- 2 boincer umatlas 289534184 Jun 19 20:44 ATLAS.root_0
[2025-06-19 21:53:52] -rw-r--r-- 2 boincer umatlas     15095 Jun 19 20:44 start_atlas.sh
[2025-06-19 21:53:52] -rw-r--r-- 2 boincer umatlas    542876 Jun 19 20:44 input.tar.gz
[2025-06-19 21:53:52] -rw------- 1 boincer umatlas 238223253 Jun 19 21:52 HITS.pool.root.1
[2025-06-19 21:53:52] -rw------- 1 boincer umatlas    747520 Jun 19 21:53 result.tar.gz
21:53:53 (32419): run_atlas exited; CPU time 30194.908058
21:53:53 (32419): called boinc_finish(0)

</stderr_txt>
]]>

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