Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:44:40 (2696578): wrapper (7.7.26015): starting
12:44:40 (2696578): wrapper: running run_atlas (--nthreads 8)
[2025-06-19 12:44:40] Arguments: --nthreads 8
[2025-06-19 12:44:40] Threads: 8
[2025-06-19 12:44:40] Checking for CVMFS
[2025-06-19 12:44:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-19 12:44:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-19 12:44:40] Running cvmfs_config stat atlas.cern.ch
[2025-06-19 12:44:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-19 12:44:41] 2.11.3.0 21122 424624 134816 147349 1 244 40805876 45568001 14745 130560 0 2111881786 99.761 1703732033 20358 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2025-06-19 12:44:41] CVMFS is ok
[2025-06-19 12:44:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-19 12:44:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-19 12:44:41] Further information can be found at the LHC@home message board.
[2025-06-19 12:44:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-19 12:44:41] Checking for apptainer binary...
[2025-06-19 12:44:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-19 12:44:41] Running /usr/bin/apptainer --version
[2025-06-19 12:44:41] apptainer version 1.3.3-1.el9
[2025-06-19 12:44:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-19 12:44:41] WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0016.triumf.lcg
[2025-06-19 12:44:41] apptainer works
[2025-06-19 12:44:41] Set ATHENA_PROC_NUMBER=8
[2025-06-19 12:44:41] Set ATHENA_CORE_NUMBER=8
[2025-06-19 12:44:41] Starting ATLAS job with PandaID=6700207581
[2025-06-19 12:44:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-19 12:49:04]  *** The last 200 lines of the pilot log: ***
[2025-06-19 12:49:04] 2025-06-19 19:48:32,167 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-19 12:49:04] 2025-06-19 19:48:32,167 | WARNING  | found no stored workdir sizes
[2025-06-19 12:49:04] 2025-06-19 19:48:32,167 | INFO     | will not add max space = 0 B to job metrics
[2025-06-19 12:49:04] 2025-06-19 19:48:32,168 | WARNING  | wrong length of table data, x=[1750362366.0], y=[1978.0] (must be same and length>=4)
[2025-06-19 12:49:04] 2025-06-19 19:48:32,168 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-06-19 12:49:04] 2025-06-19 19:48:32,168 | INFO     | ..............................
[2025-06-19 12:49:04] 2025-06-19 19:48:32,168 | INFO     | . Timing measurements:
[2025-06-19 12:49:04] 2025-06-19 19:48:32,168 | INFO     | . get job = 0 s
[2025-06-19 12:49:04] 2025-06-19 19:48:32,169 | INFO     | . initial setup = 3 s
[2025-06-19 12:49:04] 2025-06-19 19:48:32,169 | INFO     | . payload setup = 10 s
[2025-06-19 12:49:04] 2025-06-19 19:48:32,169 | INFO     | . stage-in = 0 s
[2025-06-19 12:49:04] 2025-06-19 19:48:32,169 | INFO     | . payload execution = 27 s
[2025-06-19 12:49:04] 2025-06-19 19:48:32,169 | INFO     | . stage-out = 0 s
[2025-06-19 12:49:04] 2025-06-19 19:48:32,169 | INFO     | . log creation = 0 s
[2025-06-19 12:49:04] 2025-06-19 19:48:32,169 | INFO     | ..............................
[2025-06-19 12:49:04] 2025-06-19 19:48:32,169 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-19 12:49:04] 2025-06-19 19:48:32,169 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6700207581/pilotlog.txt
[2025-06-19 12:49:04] 2025-06-19 19:48:32,180 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-06-19 12:49:04] - Log from pilotlog.txt -
[2025-06-19 12:49:04] 2025-06-19 19:48:32,167 | INFO     | extracted standard memory fields from prmon json
[2025-06-19 12:49:04] 2025-06-19 19:48:32,167 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-19 12:49:04] 2025-06-19 19:48:32,167 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-19 12:49:04] 2025-06-19 19:48:32,167 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-19 12:49:04] 2025-06-19 19:48:32,167 | WARNING  | found no stored workdir sizes
[2025-06-19 12:49:04] 2025-06-19 19:48:32,167 | INFO     | will not add max space = 0 B to job metrics
[2025-06-19 12:49:04] 2025-06-19 19:48:32,168 | WARNING  | wrong length of table data, x=[1750362366.0], y=[1978.0] (must be same and length>=4)
[2025-06-19 12:49:04] 2025-06-19 19:48:32,168 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-06-19 12:49:04] 2025-06-19 19:48:32,168 | INFO     | ..............................
[2025-06-19 12:49:04] 2025-06-19 19:48:32,168 | INFO     | . Timing measurements:
[2025-06-19 12:49:04] 2025-06-19 19:48:32,168 | INFO     | . get job = 0 s
[2025-06-19 12:49:04] 2025-06-19 19:48:32,169 | INFO     | . initial setup = 3 s
[2025-06-19 12:49:04] 2025-06-19 19:48:32,169 | INFO     | . payload setup = 10 s
[2025-06-19 12:49:04] 2025-06-19 19:48:32,169 | INFO     | . stage-in = 0 s
[2025-06-19 12:49:04] 2025-06-19 19:48:32,169 | INFO     | . payload execution = 27 s
[2025-06-19 12:49:04] 2025-06-19 19:48:32,169 | INFO     | . stage-out = 0 s
[2025-06-19 12:49:04] 2025-06-19 19:48:32,169 | INFO     | . log creation = 0 s
[2025-06-19 12:49:04] 2025-06-19 19:48:32,169 | INFO     | ..............................
[2025-06-19 12:49:04] 2025-06-19 19:48:32,169 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-19 12:49:04] 2025-06-19 19:48:32,169 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6700207581/pilotlog.txt
[2025-06-19 12:49:04] 2025-06-19 19:48:32,181 | WARNING  | 
[2025-06-19 12:49:04] [begin log extracts]
[2025-06-19 12:49:04] - Log from pilotlog.txt -
[2025-06-19 12:49:04] 2025-06-19 19:48:32,167 | INFO     | extracted standard memory fields from prmon json
[2025-06-19 12:49:04] 2025-06-19 19:48:32,167 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-19 12:49:04] 2025-06-19 19:48:32,167 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-19 12:49:04] 2025-06-19 19:48:32,167 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-19 12:49:04] 2025-06-19 19:48:32,167 | WARNING  | found no stored workdir sizes
[2025-06-19 12:49:04] 2025-06-19 19:48:32,167 | INFO     | will not add max space = 0 B to job metrics
[2025-06-19 12:49:04] 2025-06-19 19:48:32,168 | WARNING  | wrong length of table data, x=[1750362366.0], y=[1978.0] (must be same and length>=4)
[2025-06-19 12:49:04] 2025-06-19 19:48:32,168 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-06-19 12:49:04] 2025-06-19 19:48:32,168 | INFO     | ..............................
[2025-06-19 12:49:04] 2025-06-19 19:48:32,168 | INFO     | . Timing measurements:
[2025-06-19 12:49:04] 2025-06-19 19:48:32,168 | INFO     | . get job = 0 s
[2025-06-19 12:49:04] 2025-06-19 19:48:32,169 | INFO     | . initial setup = 3 s
[2025-06-19 12:49:04] 2025-06-19 19:48:32,169 | INFO     | . payload setup = 10 s
[2025-06-19 12:49:04] 2025-06-19 19:48:32,169 | INFO     | . stage-in = 0 s
[2025-06-19 12:49:04] 2025-06-19 19:48:32,169 | INFO     | . payload execution = 27 s
[2025-06-19 12:49:04] 2025-06-19 19:48:32,169 | INFO     | . stage-out = 0 s
[2025-06-19 12:49:04] 2025-06-19 19:48:32,169 | INFO     | . log creation = 0 s
[2025-06-19 12:49:04] 2025-06-19 19:48:32,169 | INFO     | ..............................
[2025-06-19 12:49:04] 2025-06-19 19:48:32,169 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-19 12:49:04] 2025-06-19 19:48:32,169 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6700207581/pilotlog.txt
[2025-06-19 12:49:04] [end log extracts]
[2025-06-19 12:49:04] 2025-06-19 19:48:32,181 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-06-19 12:49:04] 2025-06-19 19:48:32,182 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-06-19 12:49:04] 2025-06-19 19:48:32,322 | INFO     | 
[2025-06-19 12:49:04] 2025-06-19 19:48:32,322 | INFO     | job summary report
[2025-06-19 12:49:04] 2025-06-19 19:48:32,322 | INFO     | --------------------------------------------------
[2025-06-19 12:49:04] 2025-06-19 19:48:32,322 | INFO     | PanDA job id: 6700207581
[2025-06-19 12:49:04] 2025-06-19 19:48:32,323 | INFO     | task id: 45275320
[2025-06-19 12:49:04] 2025-06-19 19:48:32,323 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-06-19 12:46:18,521 CRITICAL Transform executor raised TransformValidationExceptio
[2025-06-19 12:49:04] 2025-06-19 19:48:32,323 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-19 12:49:04] 2025-06-19 19:48:32,323 | INFO     | pilot state: failed 
[2025-06-19 12:49:04] 2025-06-19 19:48:32,323 | INFO     | transexitcode: 65
[2025-06-19 12:49:04] 2025-06-19 19:48:32,323 | INFO     | exeerrorcode: 65
[2025-06-19 12:49:04] 2025-06-19 19:48:32,323 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-06-19 12:49:04] 2025-06-19 19:48:32,323 | INFO     | exitcode: 65
[2025-06-19 12:49:04] 2025-06-19 19:48:32,323 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-06-19 12:49:04] 2025-06-19 19:48:32,323 | INFO     | cpuconsumptiontime: 17 s
[2025-06-19 12:49:04] 2025-06-19 19:48:32,323 | INFO     | nevents: 0
[2025-06-19 12:49:04] 2025-06-19 19:48:32,323 | INFO     | neventsw: 0
[2025-06-19 12:49:04] 2025-06-19 19:48:32,323 | INFO     | pid: 2712226
[2025-06-19 12:49:04] 2025-06-19 19:48:32,323 | INFO     | pgrp: 2712226
[2025-06-19 12:49:04] 2025-06-19 19:48:32,324 | INFO     | corecount: 8
[2025-06-19 12:49:04] 2025-06-19 19:48:32,324 | INFO     | event service: False
[2025-06-19 12:49:04] 2025-06-19 19:48:32,324 | INFO     | sizes: {0: 2376183, 1: 2376865, 2: 2377064, 13: 2377064, 15: 2377382, 23: 2377410, 41: 2400725, 42: 2400701, 43: 2405077, 167: 2405215}
[2025-06-19 12:49:04] 2025-06-19 19:48:32,324 | INFO     | --------------------------------------------------
[2025-06-19 12:49:04] 2025-06-19 19:48:32,324 | INFO     | 
[2025-06-19 12:49:04] 2025-06-19 19:48:32,324 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-06-19 12:49:04] 2025-06-19 19:48:32,552 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-19 12:49:04] 2025-06-19 19:48:32,553 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-19 12:49:04] 2025-06-19 19:48:32,553 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-19 12:49:04] 2025-06-19 19:48:32,553 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-19 12:49:04] 2025-06-19 19:48:32,553 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-19 12:49:04] 2025-06-19 19:48:32,553 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-19 12:49:04] 2025-06-19 19:48:32,553 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-19 12:49:04] 2025-06-19 19:48:32,553 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-19 12:49:04] 2025-06-19 19:48:32,553 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-19 12:49:04] 2025-06-19 19:48:32,553 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-19 12:49:04] 2025-06-19 19:48:32,553 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-19 12:49:04] 2025-06-19 19:48:32,553 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-19 12:49:04] 2025-06-19 19:48:32,553 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-19 12:49:04] 2025-06-19 19:48:32,554 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-19 12:49:04] 2025-06-19 19:48:32,554 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-19 12:49:04] 2025-06-19 19:48:32,554 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-19 12:49:04] 2025-06-19 19:48:32,554 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-19 12:49:04] 2025-06-19 19:48:32,554 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-19 12:49:04] 2025-06-19 19:48:32,554 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-19 12:49:04] 2025-06-19 19:48:32,554 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-19 12:49:04] 2025-06-19 19:48:32,554 | INFO     | job 6700207581 has completed (purged errors)
[2025-06-19 12:49:04] 2025-06-19 19:48:32,554 | INFO     | overall cleanup function is called
[2025-06-19 12:49:04] 2025-06-19 19:48:33,561 | INFO     | --- collectZombieJob: --- 10, [2712226]
[2025-06-19 12:49:04] 2025-06-19 19:48:33,561 | INFO     | zombie collector waiting for pid 2712226
[2025-06-19 12:49:04] 2025-06-19 19:48:33,561 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-19 12:49:04] 2025-06-19 19:48:33,561 | INFO     | collected zombie processes
[2025-06-19 12:49:04] 2025-06-19 19:48:33,562 | INFO     | will attempt to kill all subprocesses of pid=2712226
[2025-06-19 12:49:04] 2025-06-19 19:48:33,985 | INFO     | process IDs to be killed: [2712226] (in reverse order)
[2025-06-19 12:49:04] 2025-06-19 19:48:34,056 | WARNING  | found no corresponding commands to process id(s)
[2025-06-19 12:49:04] 2025-06-19 19:48:34,056 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-19 12:49:04] 2025-06-19 19:48:34,084 | INFO     | did not find any defunct processes belonging to 2712226
[2025-06-19 12:49:04] 2025-06-19 19:48:34,096 | INFO     | did not find any defunct processes belonging to 2712226
[2025-06-19 12:49:04] 2025-06-19 19:48:34,096 | INFO     | ready for new job
[2025-06-19 12:49:04] 2025-06-19 19:48:34,096 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-19 12:49:04] 2025-06-19 19:48:34,098 | INFO     | ***************************************
[2025-06-19 12:49:04] 2025-06-19 19:48:34,098 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-06-19 12:49:04] 2025-06-19 19:48:34,098 | INFO     | ***************************************
[2025-06-19 12:49:04] 2025-06-19 19:48:34,098 | INFO     | 
[2025-06-19 12:49:04] 2025-06-19 19:48:34,113 | INFO     | architecture information:
[2025-06-19 12:49:04] 2025-06-19 19:48:34,115 | INFO     | executing command: cat /etc/os-release
[2025-06-19 12:49:04] 2025-06-19 19:48:34,153 | INFO     | cat /etc/os-release:
[2025-06-19 12:49:04] NAME="CentOS Linux"
[2025-06-19 12:49:04] VERSION="7 (Core)"
[2025-06-19 12:49:04] ID="centos"
[2025-06-19 12:49:04] ID_LIKE="rhel fedora"
[2025-06-19 12:49:04] VERSION_ID="7"
[2025-06-19 12:49:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-19 12:49:04] ANSI_COLOR="0;31"
[2025-06-19 12:49:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-19 12:49:04] HOME_URL="https://www.centos.org/"
[2025-06-19 12:49:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-19 12:49:04] 
[2025-06-19 12:49:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-19 12:49:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-19 12:49:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-19 12:49:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-19 12:49:04] 
[2025-06-19 12:49:04] 2025-06-19 19:48:34,153 | INFO     | ***************************************
[2025-06-19 12:49:04] 2025-06-19 19:48:34,657 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-06-19 12:49:04] 2025-06-19 19:48:34,780 | INFO     | sufficient remaining disk space (1027699900416 B)
[2025-06-19 12:49:04] 2025-06-19 19:48:34,781 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-19 12:49:04] 2025-06-19 19:48:34,781 | INFO     | current server update state: UPDATING_FINAL
[2025-06-19 12:49:04] 2025-06-19 19:48:34,781 | INFO     | update_server=False
[2025-06-19 12:49:04] 2025-06-19 19:48:34,781 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-19 12:49:04] 2025-06-19 19:48:34,787 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-19 12:49:04] 2025-06-19 19:48:34,788 | INFO     | aborting loop
[2025-06-19 12:49:04] 2025-06-19 19:48:34,791 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-19 12:49:04] 2025-06-19 19:48:34,928 | INFO     | all payload control threads have been joined
[2025-06-19 12:49:04] 2025-06-19 19:48:35,456 | INFO     | all data control threads have been joined
[2025-06-19 12:49:04] 2025-06-19 19:48:35,787 | INFO     | [job] retrieve thread has finished
[2025-06-19 12:49:04] 2025-06-19 19:48:35,793 | INFO     | [job] job monitor thread has finished
[2025-06-19 12:49:04] 2025-06-19 19:48:35,795 | INFO     | [payload] validate_pre thread has finished
[2025-06-19 12:49:04] 2025-06-19 19:48:35,838 | INFO     | [payload] validate_post thread has finished
[2025-06-19 12:49:04] 2025-06-19 19:48:35,860 | INFO     | all job control threads have been joined
[2025-06-19 12:49:04] 2025-06-19 19:48:35,934 | INFO     | [payload] control thread has finished
[2025-06-19 12:49:04] 2025-06-19 19:48:36,081 | INFO     | [job] validate thread has finished
[2025-06-19 12:49:04] 2025-06-19 19:48:36,383 | INFO     | [data] copytool_in thread has finished
[2025-06-19 12:49:04] 2025-06-19 19:48:36,394 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-19 12:49:04] 2025-06-19 19:48:36,462 | INFO     | [data] control thread has finished
[2025-06-19 12:49:04] 2025-06-19 19:48:36,587 | INFO     | [job] create_data_payload thread has finished
[2025-06-19 12:49:04] 2025-06-19 19:48:36,637 | INFO     | [payload] failed_post thread has finished
[2025-06-19 12:49:04] 2025-06-19 19:48:36,806 | INFO     | [data] copytool_out thread has finished
[2025-06-19 12:49:04] 2025-06-19 19:48:36,809 | INFO     | [payload] execute_payloads thread has finished
[2025-06-19 12:49:04] 2025-06-19 19:48:36,828 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-19 12:49:04] 2025-06-19 19:48:36,866 | INFO     | [job] control thread has finished
[2025-06-19 12:49:04] 2025-06-19 19:48:37,335 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-19 12:49:04] 2025-06-19 19:48:38,341 | INFO     | [job] queue monitor thread has finished
[2025-06-19 12:49:04] 2025-06-19 19:48:40,418 | INFO     | [data] queue_monitor thread has finished
[2025-06-19 12:49:04] 2025-06-19 19:48:42,450 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140506216204096)>', '<ExcThread(monitor, started 140505643980544)>']
[2025-06-19 12:49:04] 2025-06-19 19:48:47,476 | INFO     | all workflow threads have been joined
[2025-06-19 12:49:04] 2025-06-19 19:48:47,476 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-19 12:49:04] 2025-06-19 19:48:47,477 | INFO     | traces error code: 0
[2025-06-19 12:49:04] 2025-06-19 19:48:47,477 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-19 12:49:04] 2025-06-19 19:49:03,889 | INFO     | PID=2705104 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-19 12:49:04] 2025-06-19 19:49:03,889 | INFO     | .. there are 19 such processes running
[2025-06-19 12:49:04] 2025-06-19 19:49:03,889 | INFO     | found 0 job(s) in 20 queues
[2025-06-19 12:49:04] 2025-06-19 19:49:03,889 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-19 12:49:04] 2025-06-19 19:49:03,889 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-19 12:49:04] 2025-06-19 19:49:03,889 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-19 12:49:04] 2025-06-19 19:49:03,889 | CRITICAL | thread 'MainThread' is not alive
[2025-06-19 12:49:04] 2025-06-19 19:49:03,889 | INFO     | [monitor] control thread has ended
[2025-06-19 12:49:04] 2025-06-19 19:49:04,121 [wrapper] ==== pilot stdout END ====
[2025-06-19 12:49:04] 2025-06-19 19:49:04,123 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-19 12:49:04] 2025-06-19 19:49:04,124 [wrapper] pilotpid: 2705104
[2025-06-19 12:49:04] 2025-06-19 19:49:04,126 [wrapper] Pilot exit status: 0
[2025-06-19 12:49:04] 2025-06-19 19:49:04,134 [wrapper] pandaids: 6700207581
[2025-06-19 12:49:04] 2025-06-19 19:49:04,180 [wrapper] cleanup supervisor_pilot 2705117 2705105
[2025-06-19 12:49:04] 2025-06-19 19:49:04,187 [wrapper] Test setup, not cleaning
[2025-06-19 12:49:04] 2025-06-19 19:49:04,189 [wrapper] apfmon messages muted
[2025-06-19 12:49:04] 2025-06-19 19:49:04,190 [wrapper] ==== wrapper stdout END ====
[2025-06-19 12:49:04] 2025-06-19 19:49:04,193 [wrapper] ==== wrapper stderr END ====
[2025-06-19 12:49:04]  *** Error codes and diagnostics ***
[2025-06-19 12:49:04]     "exeErrorCode": 65,
[2025-06-19 12:49:04]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-06-19 12:49:04]     "pilotErrorCode": 1305,
[2025-06-19 12:49:04]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-06-19 12:49:04]  *** Listing of results directory ***
[2025-06-19 12:49:04] total 288536
[2025-06-19 12:49:04] -rw-r--r--. 1 boinc boinc    530466 Jun 19 09:26 pilot3.tar.gz
[2025-06-19 12:49:04] -rw-r--r--. 1 boinc boinc      5112 Jun 19 09:56 queuedata.json
[2025-06-19 12:49:04] -rwx------. 1 boinc boinc     36245 Jun 19 09:56 runpilot2-wrapper.sh
[2025-06-19 12:49:04] -rw-r--r--. 1 boinc boinc       100 Jun 19 12:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-19 12:49:04] -rwxr-xr-x. 1 boinc boinc      7986 Jun 19 12:44 run_atlas
[2025-06-19 12:49:04] -rw-r--r--. 1 boinc boinc       105 Jun 19 12:44 job.xml
[2025-06-19 12:49:04] -rw-r--r--. 1 boinc boinc      6450 Jun 19 12:44 init_data.xml
[2025-06-19 12:49:04] -rw-r--r--. 2 boinc boinc 291417661 Jun 19 12:44 EVNT.45275317._000242.pool.root.1
[2025-06-19 12:49:04] -rw-r--r--. 2 boinc boinc     15095 Jun 19 12:44 start_atlas.sh
[2025-06-19 12:49:04] drwxrwx--x. 2 boinc boinc      4096 Jun 19 12:44 shared
[2025-06-19 12:49:04] -rw-r--r--. 2 boinc boinc    542879 Jun 19 12:44 input.tar.gz
[2025-06-19 12:49:04] -rw-r--r--. 1 boinc boinc         0 Jun 19 12:44 boinc_lockfile
[2025-06-19 12:49:04] -rw-r--r--. 1 boinc boinc      2549 Jun 19 12:44 pandaJob.out
[2025-06-19 12:49:04] -rw-------. 1 boinc boinc    964950 Jun 19 12:45 agis_schedconf.cvmfs.json
[2025-06-19 12:49:04] -rw-------. 1 boinc boinc   1582103 Jun 19 12:45 agis_ddmendpoints.agis.ALL.json
[2025-06-19 12:49:04] drwx------. 4 boinc boinc      4096 Jun 19 12:45 pilot3
[2025-06-19 12:49:04] -rw-r--r--. 1 boinc boinc       522 Jun 19 12:46 boinc_task_state.xml
[2025-06-19 12:49:04] -rw-------. 1 boinc boinc       950 Jun 19 12:46 memory_monitor_summary.json
[2025-06-19 12:49:04] -rw-------. 1 boinc boinc     21358 Jun 19 12:46 log.45275320._005827.job.log.tgz.1
[2025-06-19 12:49:04] -rw-------. 1 boinc boinc        95 Jun 19 12:48 pilot_heartbeat.json
[2025-06-19 12:49:04] -rw-------. 1 boinc boinc      8366 Jun 19 12:48 heartbeat.json
[2025-06-19 12:49:04] -rw-r--r--. 1 boinc boinc      8192 Jun 19 12:49 boinc_mmap_file
[2025-06-19 12:49:04] -rw-r--r--. 1 boinc boinc        22 Jun 19 12:49 wrapper_checkpoint.txt
[2025-06-19 12:49:04] -rw-------. 1 boinc boinc       893 Jun 19 12:49 pilotlog.txt
[2025-06-19 12:49:04] -rw-------. 1 boinc boinc     76451 Jun 19 12:49 log.45275320._005827.job.log.1
[2025-06-19 12:49:04] -rw-------. 1 boinc boinc       188 Jun 19 12:49 output.list
[2025-06-19 12:49:04] -rw-r--r--. 1 boinc boinc       620 Jun 19 12:49 runtime_log
[2025-06-19 12:49:04] -rw-------. 1 boinc boinc    112640 Jun 19 12:49 result.tar.gz
[2025-06-19 12:49:04] -rw-r--r--. 1 boinc boinc      8648 Jun 19 12:49 runtime_log.err
[2025-06-19 12:49:04] -rw-------. 1 boinc boinc       644 Jun 19 12:49 2KoKDm0jXm7n9Rq4apOajLDm4fhM0noT9bVof3QYDmbYdKDmzqWBSm.diag
[2025-06-19 12:49:04] -rw-r--r--. 1 boinc boinc     21836 Jun 19 12:49 stderr.txt
[2025-06-19 12:49:04] No HITS result produced
[2025-06-19 12:49:04]  *** Contents of shared directory: ***
[2025-06-19 12:49:04] total 285252
[2025-06-19 12:49:04] -rw-r--r--. 2 boinc boinc 291417661 Jun 19 12:44 ATLAS.root_0
[2025-06-19 12:49:04] -rw-r--r--. 2 boinc boinc     15095 Jun 19 12:44 start_atlas.sh
[2025-06-19 12:49:04] -rw-r--r--. 2 boinc boinc    542879 Jun 19 12:44 input.tar.gz
[2025-06-19 12:49:04] -rw-------. 1 boinc boinc    112640 Jun 19 12:49 result.tar.gz
12:49:05 (2696578): run_atlas exited; CPU time 24.013600
12:49:05 (2696578): called boinc_finish(0)

</stderr_txt>
]]>

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