Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:09:41 (4109747): wrapper (7.7.26015): starting
14:09:41 (4109747): wrapper: running run_atlas (--nthreads 8)
[2025-06-19 14:09:41] Arguments: --nthreads 8
[2025-06-19 14:09:41] Threads: 8
[2025-06-19 14:09:41] Checking for CVMFS
[2025-06-19 14:09:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-19 14:09:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-19 14:09:41] Running cvmfs_config stat atlas.cern.ch
[2025-06-19 14:09:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-19 14:09:42] 2.12.6.0 8521 59250 342228 147347 2 64 34683688 40960001 23039 16776704 1 482211992 99.721 365284345 19996 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-19 14:09:42] CVMFS is ok
[2025-06-19 14:09:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-19 14:09:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-19 14:09:42] Further information can be found at the LHC@home message board.
[2025-06-19 14:09:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-19 14:09:42] Checking for apptainer binary...
[2025-06-19 14:09:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-19 14:09:42] Running /usr/bin/apptainer --version
[2025-06-19 14:09:42] apptainer version 1.4.1-1.el9
[2025-06-19 14:09:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-19 14:09:42] c7-4-30.aglt2.org
[2025-06-19 14:09:42] apptainer works
[2025-06-19 14:09:42] Set ATHENA_PROC_NUMBER=8
[2025-06-19 14:09:42] Set ATHENA_CORE_NUMBER=8
[2025-06-19 14:09:42] Starting ATLAS job with PandaID=6700179864
[2025-06-19 14:09:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-19 16:39:29]  *** The last 200 lines of the pilot log: ***
[2025-06-19 16:39:29] 2025-06-19 20:38:54,387 | INFO     | PID=4113810 has CPU usage=16.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-19 16:39:29] 2025-06-19 20:38:54,388 | INFO     | .. there are 18 such processes running
[2025-06-19 16:39:29] 2025-06-19 20:38:55,951 | INFO     | monitor loop #625: job 0:6700179864 is in state 'finished'
[2025-06-19 16:39:29] 2025-06-19 20:38:55,951 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-19 16:39:29] 2025-06-19 20:38:56,345 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-19 16:39:29] 2025-06-19 20:38:56,351 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3004.152177083333
[2025-06-19 16:39:29] 2025-06-19 20:38:56,367 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6700179864/memory_monitor_summary.json (trf name=prmon)
[2025-06-19 16:39:29] 2025-06-19 20:38:56,368 | INFO     | extracted standard info from prmon json
[2025-06-19 16:39:29] 2025-06-19 20:38:56,368 | INFO     | extracted standard memory fields from prmon json
[2025-06-19 16:39:29] 2025-06-19 20:38:56,368 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-19 16:39:29] 2025-06-19 20:38:56,368 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-19 16:39:29] 2025-06-19 20:38:56,369 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-19 16:39:29] 2025-06-19 20:38:56,371 | INFO     | fitting pss+swap vs Time
[2025-06-19 16:39:29] 2025-06-19 20:38:56,371 | INFO     | sum of square deviations: 964976232.5
[2025-06-19 16:39:29] 2025-06-19 20:38:56,372 | INFO     | sum of deviations: 21128313007.0
[2025-06-19 16:39:29] 2025-06-19 20:38:56,372 | INFO     | mean x: 1750361047.5
[2025-06-19 16:39:29] 2025-06-19 20:38:56,372 | INFO     | mean y: 2175874.808219178
[2025-06-19 16:39:29] 2025-06-19 20:38:56,372 | INFO     | -- intersect: -38322266573.9237
[2025-06-19 16:39:29] 2025-06-19 20:38:56,372 | INFO     | intersect: -38322266573.9237
[2025-06-19 16:39:29] 2025-06-19 20:38:56,373 | INFO     | chi2: 1.4474591946983415
[2025-06-19 16:39:29] 2025-06-19 20:38:56,373 | INFO     | sum of square deviations: 869188390.0
[2025-06-19 16:39:29] 2025-06-19 20:38:56,374 | INFO     | sum of deviations: 20860079232.0
[2025-06-19 16:39:29] 2025-06-19 20:38:56,374 | INFO     | mean x: 1750360895.0
[2025-06-19 16:39:29] 2025-06-19 20:38:56,374 | INFO     | mean y: 2175425.716312057
[2025-06-19 16:39:29] 2025-06-19 20:38:56,374 | INFO     | -- intersect: -42005595702.352295
[2025-06-19 16:39:29] 2025-06-19 20:38:56,374 | INFO     | intersect: -42005595702.352295
[2025-06-19 16:39:29] 2025-06-19 20:38:56,374 | INFO     | chi2: 1.4441964046465967
[2025-06-19 16:39:29] 2025-06-19 20:38:56,374 | INFO     | current chi2=1.4441964046465967 (change=0.2254149936451075 %)
[2025-06-19 16:39:29] 2025-06-19 20:38:56,374 | INFO     | right removable region: 140
[2025-06-19 16:39:29] 2025-06-19 20:38:56,374 | INFO     | sum of square deviations: 869188390.0
[2025-06-19 16:39:29] 2025-06-19 20:38:56,375 | INFO     | sum of deviations: 1762078756.9999993
[2025-06-19 16:39:29] 2025-06-19 20:38:56,375 | INFO     | mean x: 1750361200.0
[2025-06-19 16:39:29] 2025-06-19 20:38:56,375 | INFO     | mean y: 2206247.6879432625
[2025-06-19 16:39:29] 2025-06-19 20:38:56,375 | INFO     | -- intersect: -3546246910.547439
[2025-06-19 16:39:29] 2025-06-19 20:38:56,375 | INFO     | intersect: -3546246910.547439
[2025-06-19 16:39:29] 2025-06-19 20:38:56,376 | INFO     | chi2: 0.059801889536029815
[2025-06-19 16:39:29] 2025-06-19 20:38:56,376 | INFO     | current chi2=0.059801889536029815 (change=95.86849219963726 %)
[2025-06-19 16:39:29] 2025-06-19 20:38:56,376 | INFO     | sum of square deviations: 779958810.0
[2025-06-19 16:39:29] 2025-06-19 20:38:56,377 | INFO     | sum of deviations: 1240443723.0
[2025-06-19 16:39:29] 2025-06-19 20:38:56,377 | INFO     | mean x: 1750361352.5
[2025-06-19 16:39:29] 2025-06-19 20:38:56,377 | INFO     | mean y: 2207150.25
[2025-06-19 16:39:29] 2025-06-19 20:38:56,377 | INFO     | -- intersect: -2781561331.9476886
[2025-06-19 16:39:29] 2025-06-19 20:38:56,377 | INFO     | intersect: -2781561331.9476886
[2025-06-19 16:39:29] 2025-06-19 20:38:56,377 | INFO     | chi2: 0.05721683049806179
[2025-06-19 16:39:29] 2025-06-19 20:38:56,377 | INFO     | current chi2=0.05721683049806179 (change=4.322704613556672 %)
[2025-06-19 16:39:29] 2025-06-19 20:38:56,377 | INFO     | left removable region: 20
[2025-06-19 16:39:29] 2025-06-19 20:38:56,377 | INFO     | sum of square deviations: 535786790.0
[2025-06-19 16:39:29] 2025-06-19 20:38:56,378 | INFO     | sum of deviations: 912826539.5000007
[2025-06-19 16:39:29] 2025-06-19 20:38:56,378 | INFO     | mean x: 1750361474.5
[2025-06-19 16:39:29] 2025-06-19 20:38:56,378 | INFO     | mean y: 2208813.0416666665
[2025-06-19 16:39:29] 2025-06-19 20:38:56,378 | INFO     | -- intersect: -2979903544.8273168
[2025-06-19 16:39:29] 2025-06-19 20:38:56,378 | INFO     | intersect: -2979903544.8273168
[2025-06-19 16:39:29] 2025-06-19 20:38:56,379 | INFO     | chi2: 0.050901012725825104
[2025-06-19 16:39:29] 2025-06-19 20:38:56,379 | INFO     | -- intersect: -2979903544.8273168
[2025-06-19 16:39:29] 2025-06-19 20:38:56,379 | INFO     | current memory leak: 1.70 B/s (using 120 data points, chi2=0.05)
[2025-06-19 16:39:29] 2025-06-19 20:38:56,379 | INFO     | could have reported an average CPU frequency of 3028 MHz (8 samples)
[2025-06-19 16:39:29] 2025-06-19 20:38:56,379 | INFO     | ..............................
[2025-06-19 16:39:29] 2025-06-19 20:38:56,379 | INFO     | . Timing measurements:
[2025-06-19 16:39:29] 2025-06-19 20:38:56,380 | INFO     | . get job = 0 s
[2025-06-19 16:39:29] 2025-06-19 20:38:56,380 | INFO     | . initial setup = 2 s
[2025-06-19 16:39:29] 2025-06-19 20:38:56,380 | INFO     | . payload setup = 8 s
[2025-06-19 16:39:29] 2025-06-19 20:38:56,380 | INFO     | . stage-in = 0 s
[2025-06-19 16:39:29] 2025-06-19 20:38:56,380 | INFO     | . payload execution = 8904 s
[2025-06-19 16:39:29] 2025-06-19 20:38:56,380 | INFO     | . stage-out = 1 s
[2025-06-19 16:39:29] 2025-06-19 20:38:56,380 | INFO     | . log creation = 0 s
[2025-06-19 16:39:29] 2025-06-19 20:38:56,380 | INFO     | ..............................
[2025-06-19 16:39:29] 2025-06-19 20:38:56,463 | INFO     | 
[2025-06-19 16:39:29] 2025-06-19 20:38:56,463 | INFO     | job summary report
[2025-06-19 16:39:29] 2025-06-19 20:38:56,464 | INFO     | --------------------------------------------------
[2025-06-19 16:39:29] 2025-06-19 20:38:56,464 | INFO     | PanDA job id: 6700179864
[2025-06-19 16:39:29] 2025-06-19 20:38:56,464 | INFO     | task id: 45275320
[2025-06-19 16:39:29] 2025-06-19 20:38:56,464 | INFO     | errors: (none)
[2025-06-19 16:39:29] 2025-06-19 20:38:56,464 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-19 16:39:29] 2025-06-19 20:38:56,464 | INFO     | pilot state: finished 
[2025-06-19 16:39:29] 2025-06-19 20:38:56,464 | INFO     | transexitcode: 0
[2025-06-19 16:39:29] 2025-06-19 20:38:56,464 | INFO     | exeerrorcode: 0
[2025-06-19 16:39:29] 2025-06-19 20:38:56,464 | INFO     | exeerrordiag: 
[2025-06-19 16:39:29] 2025-06-19 20:38:56,464 | INFO     | exitcode: 0
[2025-06-19 16:39:29] 2025-06-19 20:38:56,464 | INFO     | exitmsg: OK
[2025-06-19 16:39:29] 2025-06-19 20:38:56,464 | INFO     | cpuconsumptiontime: 43886 s
[2025-06-19 16:39:29] 2025-06-19 20:38:56,464 | INFO     | nevents: 400
[2025-06-19 16:39:29] 2025-06-19 20:38:56,464 | INFO     | neventsw: 0
[2025-06-19 16:39:29] 2025-06-19 20:38:56,465 | INFO     | pid: 4122522
[2025-06-19 16:39:29] 2025-06-19 20:38:56,465 | INFO     | pgrp: 4122522
[2025-06-19 16:39:29] 2025-06-19 20:38:56,465 | INFO     | corecount: 8
[2025-06-19 16:39:29] 2025-06-19 20:38:56,465 | INFO     | event service: False
[2025-06-19 16:39:29] 2025-06-19 20:38:56,465 | INFO     | sizes: {0: 2377005, 1: 2377005, 6: 2377295, 11: 2377323, 8917: 2405556, 8919: 2414738, 8925: 2414876}
[2025-06-19 16:39:29] 2025-06-19 20:38:56,465 | INFO     | --------------------------------------------------
[2025-06-19 16:39:29] 2025-06-19 20:38:56,465 | INFO     | 
[2025-06-19 16:39:29] 2025-06-19 20:38:56,465 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-19 16:39:29] 2025-06-19 20:38:56,488 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-19 16:39:29] 2025-06-19 20:38:56,488 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-19 16:39:29] 2025-06-19 20:38:56,488 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-19 16:39:29] 2025-06-19 20:38:56,488 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-19 16:39:29] 2025-06-19 20:38:56,489 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-19 16:39:29] 2025-06-19 20:38:56,489 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-19 16:39:29] 2025-06-19 20:38:56,489 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-19 16:39:29] 2025-06-19 20:38:56,489 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-19 16:39:29] 2025-06-19 20:38:56,489 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-19 16:39:29] 2025-06-19 20:38:56,489 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-19 16:39:29] 2025-06-19 20:38:56,489 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-19 16:39:29] 2025-06-19 20:38:56,489 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-19 16:39:29] 2025-06-19 20:38:56,489 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-19 16:39:29] 2025-06-19 20:38:56,489 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-19 16:39:29] 2025-06-19 20:38:56,489 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-19 16:39:29] 2025-06-19 20:38:56,489 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-19 16:39:29] 2025-06-19 20:38:56,489 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-19 16:39:29] 2025-06-19 20:38:56,489 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-19 16:39:29] 2025-06-19 20:38:56,490 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-19 16:39:29] 2025-06-19 20:38:56,490 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-19 16:39:29] 2025-06-19 20:38:56,490 | INFO     | job 6700179864 has completed (purged errors)
[2025-06-19 16:39:29] 2025-06-19 20:38:56,490 | INFO     | overall cleanup function is called
[2025-06-19 16:39:29] 2025-06-19 20:38:57,498 | INFO     | --- collectZombieJob: --- 10, [4122522]
[2025-06-19 16:39:29] 2025-06-19 20:38:57,498 | INFO     | zombie collector waiting for pid 4122522
[2025-06-19 16:39:29] 2025-06-19 20:38:57,499 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-19 16:39:29] 2025-06-19 20:38:57,499 | INFO     | collected zombie processes
[2025-06-19 16:39:29] 2025-06-19 20:38:57,499 | INFO     | will attempt to kill all subprocesses of pid=4122522
[2025-06-19 16:39:29] 2025-06-19 20:38:57,970 | INFO     | process IDs to be killed: [4122522] (in reverse order)
[2025-06-19 16:39:29] 2025-06-19 20:38:58,122 | WARNING  | found no corresponding commands to process id(s)
[2025-06-19 16:39:29] 2025-06-19 20:38:58,122 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-19 16:39:29] 2025-06-19 20:38:58,142 | INFO     | did not find any defunct processes belonging to 4122522
[2025-06-19 16:39:29] 2025-06-19 20:38:58,163 | INFO     | did not find any defunct processes belonging to 4122522
[2025-06-19 16:39:29] 2025-06-19 20:38:58,163 | INFO     | ready for new job
[2025-06-19 16:39:29] 2025-06-19 20:38:58,163 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-19 16:39:29] 2025-06-19 20:38:58,165 | INFO     | ***************************************
[2025-06-19 16:39:29] 2025-06-19 20:38:58,165 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-06-19 16:39:29] 2025-06-19 20:38:58,165 | INFO     | ***************************************
[2025-06-19 16:39:29] 2025-06-19 20:38:58,165 | INFO     | 
[2025-06-19 16:39:29] 2025-06-19 20:38:58,183 | INFO     | architecture information:
[2025-06-19 16:39:29] 2025-06-19 20:38:58,184 | INFO     | executing command: cat /etc/os-release
[2025-06-19 16:39:29] 2025-06-19 20:38:58,203 | INFO     | cat /etc/os-release:
[2025-06-19 16:39:29] NAME="CentOS Linux"
[2025-06-19 16:39:29] VERSION="7 (Core)"
[2025-06-19 16:39:29] ID="centos"
[2025-06-19 16:39:29] ID_LIKE="rhel fedora"
[2025-06-19 16:39:29] VERSION_ID="7"
[2025-06-19 16:39:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-19 16:39:29] ANSI_COLOR="0;31"
[2025-06-19 16:39:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-19 16:39:29] HOME_URL="https://www.centos.org/"
[2025-06-19 16:39:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-19 16:39:29] 
[2025-06-19 16:39:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-19 16:39:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-19 16:39:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-19 16:39:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-19 16:39:29] 
[2025-06-19 16:39:29] 2025-06-19 20:38:58,203 | INFO     | ***************************************
[2025-06-19 16:39:29] 2025-06-19 20:38:58,706 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-19 16:39:29] 2025-06-19 20:38:58,725 | INFO     | sufficient remaining disk space (128254476288 B)
[2025-06-19 16:39:29] 2025-06-19 20:38:58,726 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-19 16:39:29] 2025-06-19 20:38:58,726 | INFO     | current server update state: UPDATING_FINAL
[2025-06-19 16:39:29] 2025-06-19 20:38:58,726 | INFO     | update_server=False
[2025-06-19 16:39:29] 2025-06-19 20:38:58,726 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-19 16:39:29] 2025-06-19 20:38:58,726 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-19 16:39:29] 2025-06-19 20:38:58,922 | INFO     | all data control threads have been joined
[2025-06-19 16:39:29] 2025-06-19 20:38:59,384 | INFO     | all payload control threads have been joined
[2025-06-19 16:39:29] 2025-06-19 20:38:59,459 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-19 16:39:29] 2025-06-19 20:38:59,459 | INFO     | aborting loop
[2025-06-19 16:39:29] 2025-06-19 20:38:59,723 | INFO     | all job control threads have been joined
[2025-06-19 16:39:29] 2025-06-19 20:38:59,731 | INFO     | [job] retrieve thread has finished
[2025-06-19 16:39:29] 2025-06-19 20:38:59,928 | INFO     | [data] control thread has finished
[2025-06-19 16:39:29] 2025-06-19 20:38:59,969 | INFO     | [payload] validate_post thread has finished
[2025-06-19 16:39:29] 2025-06-19 20:39:00,183 | INFO     | [payload] failed_post thread has finished
[2025-06-19 16:39:29] 2025-06-19 20:39:00,390 | INFO     | [payload] control thread has finished
[2025-06-19 16:39:29] 2025-06-19 20:39:00,464 | INFO     | [job] job monitor thread has finished
[2025-06-19 16:39:29] 2025-06-19 20:39:00,697 | INFO     | [payload] execute_payloads thread has finished
[2025-06-19 16:39:29] 2025-06-19 20:39:00,708 | INFO     | [data] copytool_in thread has finished
[2025-06-19 16:39:29] 2025-06-19 20:39:00,728 | INFO     | [job] control thread has finished
[2025-06-19 16:39:29] 2025-06-19 20:39:00,733 | INFO     | [data] copytool_out thread has finished
[2025-06-19 16:39:29] 2025-06-19 20:39:00,809 | INFO     | [payload] validate_pre thread has finished
[2025-06-19 16:39:29] 2025-06-19 20:39:00,827 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-19 16:39:29] 2025-06-19 20:39:00,828 | INFO     | [job] validate thread has finished
[2025-06-19 16:39:29] 2025-06-19 20:39:00,842 | INFO     | [job] create_data_payload thread has finished
[2025-06-19 16:39:29] 2025-06-19 20:39:00,955 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-19 16:39:29] 2025-06-19 20:39:01,474 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-19 16:39:29] 2025-06-19 20:39:02,481 | INFO     | [job] queue monitor thread has finished
[2025-06-19 16:39:29] 2025-06-19 20:39:04,961 | INFO     | [data] queue_monitor thread has finished
[2025-06-19 16:39:29] 2025-06-19 20:39:06,012 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140446778771264)>', '<ExcThread(monitor, started 140446294599424)>']
[2025-06-19 16:39:29] 2025-06-19 20:39:11,038 | INFO     | all workflow threads have been joined
[2025-06-19 16:39:29] 2025-06-19 20:39:11,038 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-19 16:39:29] 2025-06-19 20:39:11,039 | INFO     | traces error code: 0
[2025-06-19 16:39:29] 2025-06-19 20:39:11,039 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-19 16:39:29] 2025-06-19 20:39:29,080 | INFO     | PID=4113810 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-19 16:39:29] 2025-06-19 20:39:29,080 | INFO     | .. there are 18 such processes running
[2025-06-19 16:39:29] 2025-06-19 20:39:29,082 | INFO     | found 0 job(s) in 20 queues
[2025-06-19 16:39:29] 2025-06-19 20:39:29,082 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-19 16:39:29] 2025-06-19 20:39:29,082 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-19 16:39:29] 2025-06-19 20:39:29,082 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-19 16:39:29] 2025-06-19 20:39:29,082 | INFO     | [monitor] control thread has ended
[2025-06-19 16:39:29] 2025-06-19 20:39:29,286 [wrapper] ==== pilot stdout END ====
[2025-06-19 16:39:29] 2025-06-19 20:39:29,289 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-19 16:39:29] 2025-06-19 20:39:29,292 [wrapper] pilotpid: 4113810
[2025-06-19 16:39:29] 2025-06-19 20:39:29,294 [wrapper] Pilot exit status: 0
[2025-06-19 16:39:29] 2025-06-19 20:39:29,307 [wrapper] pandaids: 6700179864
[2025-06-19 16:39:29] 2025-06-19 20:39:29,413 [wrapper] cleanup supervisor_pilot  374379 4113811
[2025-06-19 16:39:29] 2025-06-19 20:39:29,417 [wrapper] Test setup, not cleaning
[2025-06-19 16:39:29] 2025-06-19 20:39:29,421 [wrapper] apfmon messages muted
[2025-06-19 16:39:29] 2025-06-19 20:39:29,426 [wrapper] ==== wrapper stdout END ====
[2025-06-19 16:39:29] 2025-06-19 20:39:29,431 [wrapper] ==== wrapper stderr END ====
[2025-06-19 16:39:29]  *** Error codes and diagnostics ***
[2025-06-19 16:39:29]     "exeErrorCode": 0,
[2025-06-19 16:39:29]     "exeErrorDiag": "",
[2025-06-19 16:39:29]     "pilotErrorCode": 0,
[2025-06-19 16:39:29]     "pilotErrorDiag": "",
[2025-06-19 16:39:29]  *** Listing of results directory ***
[2025-06-19 16:39:29] total 511848
[2025-06-19 16:39:29] -rw-r--r--. 1 boincer umatlas    530466 Jun 19 03:54 pilot3.tar.gz
[2025-06-19 16:39:29] -rw-r--r--. 1 boincer umatlas      5112 Jun 19 03:58 queuedata.json
[2025-06-19 16:39:29] -rwx------. 1 boincer umatlas     36245 Jun 19 03:58 runpilot2-wrapper.sh
[2025-06-19 16:39:29] -rw-r--r--. 1 boincer umatlas       100 Jun 19 14:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-19 16:39:29] -rwxr-xr-x. 1 boincer umatlas      7986 Jun 19 14:09 run_atlas
[2025-06-19 16:39:29] -rw-r--r--. 1 boincer umatlas       105 Jun 19 14:09 job.xml
[2025-06-19 16:39:29] -rw-r--r--. 2 boincer umatlas 289111000 Jun 19 14:09 EVNT.45275317._000009.pool.root.1
[2025-06-19 16:39:29] -rw-r--r--. 2 boincer umatlas     15095 Jun 19 14:09 start_atlas.sh
[2025-06-19 16:39:29] drwxrwx--x. 2 boincer umatlas      4096 Jun 19 14:09 shared
[2025-06-19 16:39:29] -rw-r--r--. 2 boincer umatlas    542873 Jun 19 14:09 input.tar.gz
[2025-06-19 16:39:29] -rw-r--r--. 1 boincer umatlas         0 Jun 19 14:09 boinc_lockfile
[2025-06-19 16:39:29] -rw-r--r--. 1 boincer umatlas      2546 Jun 19 14:09 pandaJob.out
[2025-06-19 16:39:29] -rw-------. 1 boincer umatlas    964950 Jun 19 14:09 agis_schedconf.cvmfs.json
[2025-06-19 16:39:29] -rw-------. 1 boincer umatlas   1582103 Jun 19 14:09 agis_ddmendpoints.agis.ALL.json
[2025-06-19 16:39:29] drwx------. 4 boincer umatlas      4096 Jun 19 14:09 pilot3
[2025-06-19 16:39:29] -rw-r--r--. 1 boincer umatlas      6934 Jun 19 16:38 init_data.xml
[2025-06-19 16:39:29] -rw-------. 1 boincer umatlas 228849681 Jun 19 16:38 HITS.45275320._000207.pool.root.1
[2025-06-19 16:39:29] -rw-r--r--. 1 boincer umatlas       529 Jun 19 16:38 boinc_task_state.xml
[2025-06-19 16:39:29] -rw-------. 1 boincer umatlas      1031 Jun 19 16:38 memory_monitor_summary.json
[2025-06-19 16:39:29] -rw-------. 1 boincer umatlas    338580 Jun 19 16:38 log.45275320._000207.job.log.tgz.1
[2025-06-19 16:39:29] -rw-------. 1 boincer umatlas      7759 Jun 19 16:38 heartbeat.json
[2025-06-19 16:39:29] -rw-r--r--. 1 boincer umatlas      8192 Jun 19 16:39 boinc_mmap_file
[2025-06-19 16:39:29] -rw-r--r--. 1 boincer umatlas        27 Jun 19 16:39 wrapper_checkpoint.txt
[2025-06-19 16:39:29] -rw-------. 1 boincer umatlas        95 Jun 19 16:39 pilot_heartbeat.json
[2025-06-19 16:39:29] -rw-------. 1 boincer umatlas       823 Jun 19 16:39 pilotlog.txt
[2025-06-19 16:39:29] -rw-------. 1 boincer umatlas    820619 Jun 19 16:39 log.45275320._000207.job.log.1
[2025-06-19 16:39:29] -rw-------. 1 boincer umatlas       357 Jun 19 16:39 output.list
[2025-06-19 16:39:29] -rw-r--r--. 1 boincer umatlas       620 Jun 19 16:39 runtime_log
[2025-06-19 16:39:29] -rw-------. 1 boincer umatlas   1177600 Jun 19 16:39 result.tar.gz
[2025-06-19 16:39:29] -rw-r--r--. 1 boincer umatlas      8655 Jun 19 16:39 runtime_log.err
[2025-06-19 16:39:29] -rw-------. 1 boincer umatlas       654 Jun 19 16:39 aSmLDmhLPm7n9Rq4apOajLDm4fhM0noT9bVof3QYDmktcKDmUbZ4Gn.diag
[2025-06-19 16:39:29] -rw-r--r--. 1 boincer umatlas     21221 Jun 19 16:39 stderr.txt
[2025-06-19 16:39:29] HITS file was successfully produced:
[2025-06-19 16:39:29] -rw-------. 1 boincer umatlas 228849681 Jun 19 16:38 shared/HITS.pool.root.1
[2025-06-19 16:39:29]  *** Contents of shared directory: ***
[2025-06-19 16:39:29] total 507532
[2025-06-19 16:39:29] -rw-r--r--. 2 boincer umatlas 289111000 Jun 19 14:09 ATLAS.root_0
[2025-06-19 16:39:29] -rw-r--r--. 2 boincer umatlas     15095 Jun 19 14:09 start_atlas.sh
[2025-06-19 16:39:29] -rw-r--r--. 2 boincer umatlas    542873 Jun 19 14:09 input.tar.gz
[2025-06-19 16:39:29] -rw-------. 1 boincer umatlas 228849681 Jun 19 16:38 HITS.pool.root.1
[2025-06-19 16:39:29] -rw-------. 1 boincer umatlas   1177600 Jun 19 16:39 result.tar.gz
16:39:30 (4109747): run_atlas exited; CPU time 44159.338957
16:39:30 (4109747): called boinc_finish(0)

</stderr_txt>
]]>

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