Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
21:28:37 (468977): wrapper (7.7.26015): starting
21:28:37 (468977): wrapper: running run_atlas (--nthreads 4)
[2025-06-19 21:28:37] Arguments: --nthreads 4
[2025-06-19 21:28:37] Threads: 4
[2025-06-19 21:28:37] Checking for CVMFS
[2025-06-19 21:28:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-19 21:28:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-19 21:28:37] Running cvmfs_config stat atlas.cern.ch
[2025-06-19 21:28:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-19 21:28:37] 2.9.2.0 46741 1454 82684 147349 0 55 31163866 36864001 0 130560 0 1113707 99.990 49507 1229 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-19 21:28:37] CVMFS is ok
[2025-06-19 21:28:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-19 21:28:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-19 21:28:37] Further information can be found at the LHC@home message board.
[2025-06-19 21:28:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-19 21:28:37] Checking for apptainer binary...
[2025-06-19 21:28:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-19 21:28:37] Running /usr/bin/apptainer --version
[2025-06-19 21:28:37] apptainer version 1.3.6-6.1
[2025-06-19 21:28:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-19 21:28:37] atlasA139a
[2025-06-19 21:28:37] apptainer works
[2025-06-19 21:28:37] Set ATHENA_PROC_NUMBER=4
[2025-06-19 21:28:37] Set ATHENA_CORE_NUMBER=4
[2025-06-19 21:28:37] Starting ATLAS job with PandaID=6699496961
[2025-06-19 21:28:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-19 23:01:58]  *** The last 200 lines of the pilot log: ***
[2025-06-19 23:01:58]  is_altstaged=None
[2025-06-19 23:01:58]  is_tar=False
[2025-06-19 23:01:58]  lfn=log.45275585._004484.job.log.tgz.1
[2025-06-19 23:01:58]  mtime=0
[2025-06-19 23:01:58]  protocol_id=None
[2025-06-19 23:01:58]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-19 23:01:58]  replicas=None
[2025-06-19 23:01:58]  scope=mc23_13p6TeV
[2025-06-19 23:01:58]  status=None
[2025-06-19 23:01:58]  status_code=0
[2025-06-19 23:01:58]  storage_token=
[2025-06-19 23:01:58]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6699496961/log.45275585._004484.job.log.tgz.1
[2025-06-19 23:01:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/08/f8/log.45275585._004484.job.log.tgz.1
[2025-06-19 23:01:58]  workdir=None
[2025-06-19 23:01:58] ]
[2025-06-19 23:01:58] 2025-06-19 21:01:19,623 | INFO     | transferring file log.45275585._004484.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6699496961/log.45275585._004484.job.log.tgz.1 to /local/data/boinc/
[2025-06-19 23:01:58] 2025-06-19 21:01:19,623 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6699496961/log.45275585._004484.job.log.tgz.1 /local/data/boinc/slots/0/log.45275585._0044
[2025-06-19 23:01:58] 2025-06-19 21:01:19,641 | INFO     | adding to output.list: log.45275585._004484.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/08/f8/log.45275585._004484.job.log.tg
[2025-06-19 23:01:58] 2025-06-19 21:01:19,642 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-19 23:01:58] 2025-06-19 21:01:19,642 | INFO     | summary of transferred files:
[2025-06-19 23:01:58] 2025-06-19 21:01:19,642 | INFO     |  -- lfn=log.45275585._004484.job.log.tgz.1, status_code=0, status=transferred
[2025-06-19 23:01:58] 2025-06-19 21:01:19,642 | INFO     | stage-out finished correctly
[2025-06-19 23:01:58] 2025-06-19 21:01:19,682 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-19 23:01:58] 2025-06-19 21:01:19,774 | INFO     | monitor loop #426: job 0:6699496961 is in state 'finished'
[2025-06-19 23:01:58] 2025-06-19 21:01:19,774 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-19 23:01:58] 2025-06-19 21:01:22,278 | INFO     | monitor loop #427: job 0:6699496961 is in state 'finished'
[2025-06-19 23:01:58] 2025-06-19 21:01:22,278 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-19 23:01:58] 2025-06-19 21:01:22,355 | INFO     | job 6699496961 has state=finished
[2025-06-19 23:01:58] 2025-06-19 21:01:22,355 | INFO     | preparing for final server update for job 6699496961 in state='finished'
[2025-06-19 23:01:58] 2025-06-19 21:01:22,356 | INFO     | this job has now completed (state=finished)
[2025-06-19 23:01:58] 2025-06-19 21:01:22,356 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-19 23:01:58] 2025-06-19 21:01:22,356 | INFO     | log transfer has been attempted: DONE
[2025-06-19 23:01:58] 2025-06-19 21:01:22,356 | INFO     | job 6699496961 has finished - writing final server update
[2025-06-19 23:01:58] 2025-06-19 21:01:22,356 | INFO     | total number of processed events: 400 (read)
[2025-06-19 23:01:58] 2025-06-19 21:01:22,356 | INFO     | executing command: lscpu
[2025-06-19 23:01:58] 2025-06-19 21:01:22,377 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-19 23:01:58] 2025-06-19 21:01:24,784 | INFO     | monitor loop #428: job 0:6699496961 is in state 'finished'
[2025-06-19 23:01:58] 2025-06-19 21:01:24,784 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-19 23:01:58] 2025-06-19 21:01:25,552 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-19 23:01:58] 2025-06-19 21:01:25,553 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3266.5520000000006
[2025-06-19 23:01:58] 2025-06-19 21:01:25,555 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6699496961/memory_monitor_summary.json (trf name=prmon)
[2025-06-19 23:01:58] 2025-06-19 21:01:25,555 | INFO     | extracted standard info from prmon json
[2025-06-19 23:01:58] 2025-06-19 21:01:25,555 | INFO     | extracted standard memory fields from prmon json
[2025-06-19 23:01:58] 2025-06-19 21:01:25,555 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-19 23:01:58] 2025-06-19 21:01:25,555 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-19 23:01:58] 2025-06-19 21:01:25,555 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-19 23:01:58] 2025-06-19 21:01:25,556 | INFO     | fitting pss+swap vs Time
[2025-06-19 23:01:58] 2025-06-19 21:01:25,556 | INFO     | sum of square deviations: 183761585.0
[2025-06-19 23:01:58] 2025-06-19 21:01:25,556 | INFO     | sum of deviations: -12250022623.0
[2025-06-19 23:01:58] 2025-06-19 21:01:25,556 | INFO     | mean x: 1750364183.5
[2025-06-19 23:01:58] 2025-06-19 21:01:25,556 | INFO     | mean y: 2528394.9523809524
[2025-06-19 23:01:58] 2025-06-19 21:01:25,556 | INFO     | -- intersect: 116686332827.54868
[2025-06-19 23:01:58] 2025-06-19 21:01:25,556 | INFO     | intersect: 116686332827.54868
[2025-06-19 23:01:58] 2025-06-19 21:01:25,556 | INFO     | chi2: 0.051172324068151594
[2025-06-19 23:01:58] 2025-06-19 21:01:25,556 | INFO     | -- intersect: 116686332827.54868
[2025-06-19 23:01:58] 2025-06-19 21:01:25,556 | INFO     | current memory leak: -66.66 B/s (using 84 data points, chi2=0.05)
[2025-06-19 23:01:58] 2025-06-19 21:01:25,557 | INFO     | could have reported an average CPU frequency of 3637 MHz (7 samples)
[2025-06-19 23:01:58] 2025-06-19 21:01:25,557 | INFO     | ..............................
[2025-06-19 23:01:58] 2025-06-19 21:01:25,557 | INFO     | . Timing measurements:
[2025-06-19 23:01:58] 2025-06-19 21:01:25,557 | INFO     | . get job = 0 s
[2025-06-19 23:01:58] 2025-06-19 21:01:25,557 | INFO     | . initial setup = 1 s
[2025-06-19 23:01:58] 2025-06-19 21:01:25,557 | INFO     | . payload setup = 4 s
[2025-06-19 23:01:58] 2025-06-19 21:01:25,557 | INFO     | . stage-in = 0 s
[2025-06-19 23:01:58] 2025-06-19 21:01:25,557 | INFO     | . payload execution = 5532 s
[2025-06-19 23:01:58] 2025-06-19 21:01:25,557 | INFO     | . stage-out = 0 s
[2025-06-19 23:01:58] 2025-06-19 21:01:25,557 | INFO     | . log creation = 0 s
[2025-06-19 23:01:58] 2025-06-19 21:01:25,557 | INFO     | ..............................
[2025-06-19 23:01:58] 2025-06-19 21:01:26,029 | INFO     | 
[2025-06-19 23:01:58] 2025-06-19 21:01:26,030 | INFO     | job summary report
[2025-06-19 23:01:58] 2025-06-19 21:01:26,030 | INFO     | --------------------------------------------------
[2025-06-19 23:01:58] 2025-06-19 21:01:26,030 | INFO     | PanDA job id: 6699496961
[2025-06-19 23:01:58] 2025-06-19 21:01:26,030 | INFO     | task id: 45275585
[2025-06-19 23:01:58] 2025-06-19 21:01:26,030 | INFO     | errors: (none)
[2025-06-19 23:01:58] 2025-06-19 21:01:26,030 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-19 23:01:58] 2025-06-19 21:01:26,030 | INFO     | pilot state: finished 
[2025-06-19 23:01:58] 2025-06-19 21:01:26,030 | INFO     | transexitcode: 0
[2025-06-19 23:01:58] 2025-06-19 21:01:26,030 | INFO     | exeerrorcode: 0
[2025-06-19 23:01:58] 2025-06-19 21:01:26,030 | INFO     | exeerrordiag: 
[2025-06-19 23:01:58] 2025-06-19 21:01:26,030 | INFO     | exitcode: 0
[2025-06-19 23:01:58] 2025-06-19 21:01:26,030 | INFO     | exitmsg: OK
[2025-06-19 23:01:58] 2025-06-19 21:01:26,030 | INFO     | cpuconsumptiontime: 21002 s
[2025-06-19 23:01:58] 2025-06-19 21:01:26,030 | INFO     | nevents: 400
[2025-06-19 23:01:58] 2025-06-19 21:01:26,030 | INFO     | neventsw: 0
[2025-06-19 23:01:58] 2025-06-19 21:01:26,030 | INFO     | pid: 479333
[2025-06-19 23:01:58] 2025-06-19 21:01:26,030 | INFO     | pgrp: 479333
[2025-06-19 23:01:58] 2025-06-19 21:01:26,030 | INFO     | corecount: 4
[2025-06-19 23:01:58] 2025-06-19 21:01:26,030 | INFO     | event service: False
[2025-06-19 23:01:58] 2025-06-19 21:01:26,030 | INFO     | sizes: {0: 2377003, 3: 2377265, 11: 2377293, 5540: 2404043, 5541: 2413103, 5547: 2413241}
[2025-06-19 23:01:58] 2025-06-19 21:01:26,030 | INFO     | --------------------------------------------------
[2025-06-19 23:01:58] 2025-06-19 21:01:26,030 | INFO     | 
[2025-06-19 23:01:58] 2025-06-19 21:01:26,030 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-06-19 23:01:58] 2025-06-19 21:01:26,051 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-19 23:01:58] 2025-06-19 21:01:26,051 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-19 23:01:58] 2025-06-19 21:01:26,051 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-19 23:01:58] 2025-06-19 21:01:26,051 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-19 23:01:58] 2025-06-19 21:01:26,051 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-19 23:01:58] 2025-06-19 21:01:26,051 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-19 23:01:58] 2025-06-19 21:01:26,051 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-19 23:01:58] 2025-06-19 21:01:26,051 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-19 23:01:58] 2025-06-19 21:01:26,051 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-19 23:01:58] 2025-06-19 21:01:26,051 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-19 23:01:58] 2025-06-19 21:01:26,051 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-19 23:01:58] 2025-06-19 21:01:26,051 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-19 23:01:58] 2025-06-19 21:01:26,051 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-19 23:01:58] 2025-06-19 21:01:26,051 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-19 23:01:58] 2025-06-19 21:01:26,051 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-19 23:01:58] 2025-06-19 21:01:26,051 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-19 23:01:58] 2025-06-19 21:01:26,051 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-19 23:01:58] 2025-06-19 21:01:26,051 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-19 23:01:58] 2025-06-19 21:01:26,051 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-19 23:01:58] 2025-06-19 21:01:26,051 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-19 23:01:58] 2025-06-19 21:01:26,052 | INFO     | job 6699496961 has completed (purged errors)
[2025-06-19 23:01:58] 2025-06-19 21:01:26,052 | INFO     | overall cleanup function is called
[2025-06-19 23:01:58] 2025-06-19 21:01:27,058 | INFO     | --- collectZombieJob: --- 10, [479333]
[2025-06-19 23:01:58] 2025-06-19 21:01:27,059 | INFO     | zombie collector waiting for pid 479333
[2025-06-19 23:01:58] 2025-06-19 21:01:27,059 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-19 23:01:58] 2025-06-19 21:01:27,059 | INFO     | collected zombie processes
[2025-06-19 23:01:58] 2025-06-19 21:01:27,059 | INFO     | will attempt to kill all subprocesses of pid=479333
[2025-06-19 23:01:58] 2025-06-19 21:01:27,104 | INFO     | process IDs to be killed: [479333] (in reverse order)
[2025-06-19 23:01:58] 2025-06-19 21:01:27,137 | WARNING  | found no corresponding commands to process id(s)
[2025-06-19 23:01:58] 2025-06-19 21:01:27,137 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-19 23:01:58] 2025-06-19 21:01:27,139 | INFO     | did not find any defunct processes belonging to 479333
[2025-06-19 23:01:58] 2025-06-19 21:01:27,140 | INFO     | did not find any defunct processes belonging to 479333
[2025-06-19 23:01:58] 2025-06-19 21:01:27,140 | INFO     | ready for new job
[2025-06-19 23:01:58] 2025-06-19 21:01:27,140 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-19 23:01:58] 2025-06-19 21:01:27,141 | INFO     | ***************************************
[2025-06-19 23:01:58] 2025-06-19 21:01:27,141 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-06-19 23:01:58] 2025-06-19 21:01:27,141 | INFO     | ***************************************
[2025-06-19 23:01:58] 2025-06-19 21:01:27,141 | INFO     | 
[2025-06-19 23:01:58] 2025-06-19 21:01:27,141 | INFO     | architecture information:
[2025-06-19 23:01:58] 2025-06-19 21:01:27,142 | INFO     | executing command: cat /etc/os-release
[2025-06-19 23:01:58] 2025-06-19 21:01:27,155 | INFO     | cat /etc/os-release:
[2025-06-19 23:01:58] NAME="CentOS Linux"
[2025-06-19 23:01:58] VERSION="7 (Core)"
[2025-06-19 23:01:58] ID="centos"
[2025-06-19 23:01:58] ID_LIKE="rhel fedora"
[2025-06-19 23:01:58] VERSION_ID="7"
[2025-06-19 23:01:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-19 23:01:58] ANSI_COLOR="0;31"
[2025-06-19 23:01:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-19 23:01:58] HOME_URL="https://www.centos.org/"
[2025-06-19 23:01:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-19 23:01:58] 
[2025-06-19 23:01:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-19 23:01:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-19 23:01:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-19 23:01:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-19 23:01:58] 
[2025-06-19 23:01:58] 2025-06-19 21:01:27,155 | INFO     | ***************************************
[2025-06-19 23:01:58] 2025-06-19 21:01:27,659 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-19 23:01:58] 2025-06-19 21:01:27,675 | INFO     | sufficient remaining disk space (324356014080 B)
[2025-06-19 23:01:58] 2025-06-19 21:01:27,675 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-19 23:01:58] 2025-06-19 21:01:27,675 | INFO     | current server update state: UPDATING_FINAL
[2025-06-19 23:01:58] 2025-06-19 21:01:27,675 | INFO     | update_server=False
[2025-06-19 23:01:58] 2025-06-19 21:01:27,675 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-19 23:01:58] 2025-06-19 21:01:27,694 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-19 23:01:58] 2025-06-19 21:01:27,915 | INFO     | all job control threads have been joined
[2025-06-19 23:01:58] 2025-06-19 21:01:28,002 | INFO     | all data control threads have been joined
[2025-06-19 23:01:58] 2025-06-19 21:01:28,293 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-19 23:01:58] 2025-06-19 21:01:28,293 | INFO     | aborting loop
[2025-06-19 23:01:58] 2025-06-19 21:01:28,681 | INFO     | [job] retrieve thread has finished
[2025-06-19 23:01:58] 2025-06-19 21:01:28,703 | INFO     | [payload] execute_payloads thread has finished
[2025-06-19 23:01:58] 2025-06-19 21:01:28,743 | INFO     | [job] create_data_payload thread has finished
[2025-06-19 23:01:58] 2025-06-19 21:01:28,787 | INFO     | [payload] validate_pre thread has finished
[2025-06-19 23:01:58] 2025-06-19 21:01:28,871 | INFO     | all payload control threads have been joined
[2025-06-19 23:01:58] 2025-06-19 21:01:28,921 | INFO     | [job] control thread has finished
[2025-06-19 23:01:58] 2025-06-19 21:01:29,008 | INFO     | [data] control thread has finished
[2025-06-19 23:01:58] 2025-06-19 21:01:29,051 | INFO     | [data] copytool_in thread has finished
[2025-06-19 23:01:58] 2025-06-19 21:01:29,299 | INFO     | [job] job monitor thread has finished
[2025-06-19 23:01:58] 2025-06-19 21:01:29,346 | INFO     | [payload] validate_post thread has finished
[2025-06-19 23:01:58] 2025-06-19 21:01:29,361 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-19 23:01:58] 2025-06-19 21:01:29,700 | INFO     | [data] copytool_out thread has finished
[2025-06-19 23:01:58] 2025-06-19 21:01:29,778 | INFO     | [payload] failed_post thread has finished
[2025-06-19 23:01:58] 2025-06-19 21:01:29,876 | INFO     | [payload] control thread has finished
[2025-06-19 23:01:58] 2025-06-19 21:01:30,162 | INFO     | [job] validate thread has finished
[2025-06-19 23:01:58] 2025-06-19 21:01:30,232 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-19 23:01:58] 2025-06-19 21:01:30,610 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-19 23:01:58] 2025-06-19 21:01:31,616 | INFO     | [job] queue monitor thread has finished
[2025-06-19 23:01:58] 2025-06-19 21:01:34,239 | INFO     | [data] queue_monitor thread has finished
[2025-06-19 23:01:58] 2025-06-19 21:01:35,652 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140585821308736)>', '<ExcThread(monitor, started 140585310594816)>']
[2025-06-19 23:01:58] 2025-06-19 21:01:40,678 | INFO     | all workflow threads have been joined
[2025-06-19 23:01:58] 2025-06-19 21:01:40,678 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-19 23:01:58] 2025-06-19 21:01:40,679 | INFO     | traces error code: 0
[2025-06-19 23:01:58] 2025-06-19 21:01:40,679 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-19 23:01:58] 2025-06-19 21:01:58,023 | INFO     | PID=472691 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-19 23:01:58] 2025-06-19 21:01:58,023 | INFO     | found 0 job(s) in 20 queues
[2025-06-19 23:01:58] 2025-06-19 21:01:58,023 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-19 23:01:58] 2025-06-19 21:01:58,023 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-19 23:01:58] 2025-06-19 21:01:58,023 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-19 23:01:58] 2025-06-19 21:01:58,023 | INFO     | [monitor] control thread has ended
[2025-06-19 23:01:58] 2025-06-19 21:01:58,101 [wrapper] ==== pilot stdout END ====
[2025-06-19 23:01:58] 2025-06-19 21:01:58,105 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-19 23:01:58] 2025-06-19 21:01:58,109 [wrapper] pilotpid: 472691
[2025-06-19 23:01:58] 2025-06-19 21:01:58,113 [wrapper] Pilot exit status: 0
[2025-06-19 23:01:58] 2025-06-19 21:01:58,125 [wrapper] pandaids: 6699496961
[2025-06-19 23:01:58] 2025-06-19 21:01:58,146 [wrapper] cleanup supervisor_pilot  492351 472692
[2025-06-19 23:01:58] 2025-06-19 21:01:58,150 [wrapper] Test setup, not cleaning
[2025-06-19 23:01:58] 2025-06-19 21:01:58,153 [wrapper] apfmon messages muted
[2025-06-19 23:01:58] 2025-06-19 21:01:58,157 [wrapper] ==== wrapper stdout END ====
[2025-06-19 23:01:58] 2025-06-19 21:01:58,161 [wrapper] ==== wrapper stderr END ====
[2025-06-19 23:01:58]  *** Error codes and diagnostics ***
[2025-06-19 23:01:58]     "exeErrorCode": 0,
[2025-06-19 23:01:58]     "exeErrorDiag": "",
[2025-06-19 23:01:58]     "pilotErrorCode": 0,
[2025-06-19 23:01:58]     "pilotErrorDiag": "",
[2025-06-19 23:01:58]  *** Listing of results directory ***
[2025-06-19 23:01:58] total 523608
[2025-06-19 23:01:58] -rw-r--r-- 1 boinc boinc    530466 Jun 19 00:46 pilot3.tar.gz
[2025-06-19 23:01:58] -rw-r--r-- 1 boinc boinc      5112 Jun 19 00:51 queuedata.json
[2025-06-19 23:01:58] -rwx------ 1 boinc boinc     36245 Jun 19 00:51 runpilot2-wrapper.sh
[2025-06-19 23:01:58] -rw-r--r-- 1 boinc boinc       100 Jun 19 21:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-19 23:01:58] -rwxr-xr-x 1 boinc boinc      7986 Jun 19 21:28 run_atlas
[2025-06-19 23:01:58] -rw-r--r-- 1 boinc boinc       105 Jun 19 21:28 job.xml
[2025-06-19 23:01:58] -rw-r--r-- 2 boinc boinc 292845206 Jun 19 21:28 EVNT.45275579._000331.pool.root.1
[2025-06-19 23:01:58] -rw-r--r-- 1 boinc boinc      6864 Jun 19 21:28 init_data.xml
[2025-06-19 23:01:58] drwxrwx--x 2 boinc boinc      4096 Jun 19 21:28 shared
[2025-06-19 23:01:58] -rw-r--r-- 2 boinc boinc    542890 Jun 19 21:28 input.tar.gz
[2025-06-19 23:01:58] -rw-r--r-- 2 boinc boinc     15095 Jun 19 21:28 start_atlas.sh
[2025-06-19 23:01:58] -rw-r--r-- 1 boinc boinc         0 Jun 19 21:28 boinc_lockfile
[2025-06-19 23:01:58] -rw-r--r-- 1 boinc boinc      2543 Jun 19 21:28 pandaJob.out
[2025-06-19 23:01:58] -rw------- 1 boinc boinc    964950 Jun 19 21:28 agis_schedconf.cvmfs.json
[2025-06-19 23:01:58] -rw------- 1 boinc boinc   1582103 Jun 19 21:28 agis_ddmendpoints.agis.ALL.json
[2025-06-19 23:01:58] drwx------ 4 boinc boinc      4096 Jun 19 21:28 pilot3
[2025-06-19 23:01:58] -rw------- 1 boinc boinc 237913587 Jun 19 23:00 HITS.45275585._004484.pool.root.1
[2025-06-19 23:01:58] -rw-r--r-- 1 boinc boinc       529 Jun 19 23:01 boinc_task_state.xml
[2025-06-19 23:01:58] -rw------- 1 boinc boinc        95 Jun 19 23:01 pilot_heartbeat.json
[2025-06-19 23:01:58] -rw------- 1 boinc boinc      1022 Jun 19 23:01 memory_monitor_summary.json
[2025-06-19 23:01:58] -rw------- 1 boinc boinc    247037 Jun 19 23:01 log.45275585._004484.job.log.tgz.1
[2025-06-19 23:01:58] -rw------- 1 boinc boinc      7769 Jun 19 23:01 heartbeat.json
[2025-06-19 23:01:58] -rw-r--r-- 1 boinc boinc      8192 Jun 19 23:01 boinc_mmap_file
[2025-06-19 23:01:58] -rw-r--r-- 1 boinc boinc        27 Jun 19 23:01 wrapper_checkpoint.txt
[2025-06-19 23:01:58] -rw------- 1 boinc boinc       746 Jun 19 23:01 pilotlog.txt
[2025-06-19 23:01:58] -rw------- 1 boinc boinc    535841 Jun 19 23:01 log.45275585._004484.job.log.1
[2025-06-19 23:01:58] -rw------- 1 boinc boinc       357 Jun 19 23:01 output.list
[2025-06-19 23:01:58] -rw-r--r-- 1 boinc boinc       620 Jun 19 23:01 runtime_log
[2025-06-19 23:01:58] -rw------- 1 boinc boinc    798720 Jun 19 23:01 result.tar.gz
[2025-06-19 23:01:58] -rw------- 1 boinc boinc       663 Jun 19 23:01 slzLDm6nGm7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDme4pKDmFfbEEm.diag
[2025-06-19 23:01:58] -rw-r--r-- 1 boinc boinc      8754 Jun 19 23:01 runtime_log.err
[2025-06-19 23:01:58] -rw-r--r-- 1 boinc boinc     21496 Jun 19 23:01 stderr.txt
[2025-06-19 23:01:58] HITS file was successfully produced:
[2025-06-19 23:01:58] -rw------- 1 boinc boinc 237913587 Jun 19 23:00 shared/HITS.pool.root.1
[2025-06-19 23:01:58]  *** Contents of shared directory: ***
[2025-06-19 23:01:58] total 519660
[2025-06-19 23:01:58] -rw-r--r-- 2 boinc boinc 292845206 Jun 19 21:28 ATLAS.root_0
[2025-06-19 23:01:58] -rw-r--r-- 2 boinc boinc    542890 Jun 19 21:28 input.tar.gz
[2025-06-19 23:01:58] -rw-r--r-- 2 boinc boinc     15095 Jun 19 21:28 start_atlas.sh
[2025-06-19 23:01:58] -rw------- 1 boinc boinc 237913587 Jun 19 23:00 HITS.pool.root.1
[2025-06-19 23:01:58] -rw------- 1 boinc boinc    798720 Jun 19 23:01 result.tar.gz
23:02:00 (468977): run_atlas exited; CPU time 21020.405881
23:02:00 (468977): called boinc_finish(0)

</stderr_txt>
]]>

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