Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
05:22:42 (111842): wrapper (7.7.26015): starting
05:22:42 (111842): wrapper: running run_atlas (--nthreads 12)
[2025-06-19 05:22:42] Arguments: --nthreads 12
[2025-06-19 05:22:42] Threads: 12
[2025-06-19 05:22:42] Checking for CVMFS
[2025-06-19 05:22:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-19 05:22:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-19 05:22:42] Running cvmfs_config stat atlas.cern.ch
[2025-06-19 05:22:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-19 05:22:43] 2.13.0.0 75361 1 43000 147328 2 185 2585376 4096000 1342 130560 0 94786 99.979 2798 1345 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2025-06-19 05:22:43] CVMFS is ok
[2025-06-19 05:22:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-19 05:22:43] Checking for apptainer binary...
[2025-06-19 05:22:43] apptainer is not installed, using version from CVMFS
[2025-06-19 05:22:43] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-19 05:22:43] dualxeon2
[2025-06-19 05:22:43] apptainer works
[2025-06-19 05:22:43] Set ATHENA_PROC_NUMBER=12
[2025-06-19 05:22:43] Set ATHENA_CORE_NUMBER=12
[2025-06-19 05:22:43] Starting ATLAS job with PandaID=6699432316
[2025-06-19 05:22:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-19 07:56:01]  *** The last 200 lines of the pilot log: ***
[2025-06-19 07:56:01] 2025-06-19 07:55:27,981 | INFO     | monitor loop #669: job 0:6699432316 is in state 'finished'
[2025-06-19 07:56:01] 2025-06-19 07:55:27,981 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-19 07:56:01] 2025-06-19 07:55:30,126 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-19 07:56:01] 2025-06-19 07:55:30,132 | INFO     | found 16 cores (8 cores per socket, 2 sockets) HT, CPU MHz: 2109.9404375000004
[2025-06-19 07:56:01] 2025-06-19 07:55:30,139 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/5/PanDA_Pilot-6699432316/memory_monitor_summary.json (trf name=prmon)
[2025-06-19 07:56:01] 2025-06-19 07:55:30,140 | INFO     | extracted standard info from prmon json
[2025-06-19 07:56:01] 2025-06-19 07:55:30,140 | INFO     | extracted standard memory fields from prmon json
[2025-06-19 07:56:01] 2025-06-19 07:55:30,140 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-19 07:56:01] 2025-06-19 07:55:30,140 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-19 07:56:01] 2025-06-19 07:55:30,140 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-19 07:56:01] 2025-06-19 07:55:30,144 | INFO     | fitting pss+swap vs Time
[2025-06-19 07:56:01] 2025-06-19 07:55:30,145 | INFO     | sum of square deviations: 1046484737.5
[2025-06-19 07:56:01] 2025-06-19 07:55:30,146 | INFO     | sum of deviations: 26522408959.5
[2025-06-19 07:56:01] 2025-06-19 07:55:30,146 | INFO     | mean x: 1750315139.5
[2025-06-19 07:56:01] 2025-06-19 07:55:30,146 | INFO     | mean y: 2696970.7933333335
[2025-06-19 07:56:01] 2025-06-19 07:55:30,146 | INFO     | -- intersect: -44357791313.75108
[2025-06-19 07:56:01] 2025-06-19 07:55:30,147 | INFO     | intersect: -44357791313.75108
[2025-06-19 07:56:01] 2025-06-19 07:55:30,147 | INFO     | chi2: 1.8476127490622904
[2025-06-19 07:56:01] 2025-06-19 07:55:30,147 | INFO     | sum of square deviations: 945282840.0
[2025-06-19 07:56:01] 2025-06-19 07:55:30,148 | INFO     | sum of deviations: 25577496237.0
[2025-06-19 07:56:01] 2025-06-19 07:55:30,149 | INFO     | mean x: 1750314987.0
[2025-06-19 07:56:01] 2025-06-19 07:55:30,149 | INFO     | mean y: 2695547.5586206894
[2025-06-19 07:56:01] 2025-06-19 07:55:30,149 | INFO     | -- intersect: -47357388756.47593
[2025-06-19 07:56:01] 2025-06-19 07:55:30,149 | INFO     | intersect: -47357388756.47593
[2025-06-19 07:56:01] 2025-06-19 07:55:30,149 | INFO     | chi2: 1.8499377765185843
[2025-06-19 07:56:01] 2025-06-19 07:55:30,150 | INFO     | current chi2=1.8499377765185843 (change=-0.12583954389110083 %)
[2025-06-19 07:56:01] 2025-06-19 07:55:30,150 | INFO     | right removable region: 144
[2025-06-19 07:56:01] 2025-06-19 07:55:30,150 | INFO     | sum of square deviations: 945282840.0
[2025-06-19 07:56:01] 2025-06-19 07:55:30,151 | INFO     | sum of deviations: -5109526652.0
[2025-06-19 07:56:01] 2025-06-19 07:55:30,151 | INFO     | mean x: 1750315292.0
[2025-06-19 07:56:01] 2025-06-19 07:55:30,151 | INFO     | mean y: 2744145.255172414
[2025-06-19 07:56:01] 2025-06-19 07:55:30,152 | INFO     | -- intersect: 9463703612.029331
[2025-06-19 07:56:01] 2025-06-19 07:55:30,152 | INFO     | intersect: 9463703612.029331
[2025-06-19 07:56:01] 2025-06-19 07:55:30,152 | INFO     | chi2: 0.015130227180887473
[2025-06-19 07:56:01] 2025-06-19 07:55:30,152 | INFO     | current chi2=0.015130227180887473 (change=99.1810931598861 %)
[2025-06-19 07:56:01] 2025-06-19 07:55:30,153 | INFO     | sum of square deviations: 850825255.0
[2025-06-19 07:56:01] 2025-06-19 07:55:30,154 | INFO     | sum of deviations: -5269519037.999995
[2025-06-19 07:56:01] 2025-06-19 07:55:30,154 | INFO     | mean x: 1750315444.5
[2025-06-19 07:56:01] 2025-06-19 07:55:30,154 | INFO     | mean y: 2744384.442857143
[2025-06-19 07:56:01] 2025-06-19 07:55:30,154 | INFO     | -- intersect: 10843184889.818047
[2025-06-19 07:56:01] 2025-06-19 07:55:30,154 | INFO     | intersect: 10843184889.818047
[2025-06-19 07:56:01] 2025-06-19 07:55:30,154 | INFO     | chi2: 0.013912853780995143
[2025-06-19 07:56:01] 2025-06-19 07:55:30,155 | INFO     | current chi2=0.013912853780995143 (change=8.045969074609257 %)
[2025-06-19 07:56:01] 2025-06-19 07:55:30,155 | INFO     | left removable region: 20
[2025-06-19 07:56:01] 2025-06-19 07:55:30,155 | INFO     | sum of square deviations: 591173875.0
[2025-06-19 07:56:01] 2025-06-19 07:55:30,156 | INFO     | sum of deviations: -3533410177.0
[2025-06-19 07:56:01] 2025-06-19 07:55:30,156 | INFO     | mean x: 1750315566.5
[2025-06-19 07:56:01] 2025-06-19 07:55:30,156 | INFO     | mean y: 2741544.5967741935
[2025-06-19 07:56:01] 2025-06-19 07:55:30,156 | INFO     | -- intersect: 10464270879.993439
[2025-06-19 07:56:01] 2025-06-19 07:55:30,157 | INFO     | intersect: 10464270879.993439
[2025-06-19 07:56:01] 2025-06-19 07:55:30,157 | INFO     | chi2: 0.013103356506387496
[2025-06-19 07:56:01] 2025-06-19 07:55:30,157 | INFO     | -- intersect: 10464270879.993439
[2025-06-19 07:56:01] 2025-06-19 07:55:30,157 | INFO     | current memory leak: -5.98 B/s (using 124 data points, chi2=0.01)
[2025-06-19 07:56:01] 2025-06-19 07:55:30,158 | INFO     | could have reported an average CPU frequency of 2203 MHz (9 samples)
[2025-06-19 07:56:01] 2025-06-19 07:55:30,158 | INFO     | ..............................
[2025-06-19 07:56:01] 2025-06-19 07:55:30,158 | INFO     | . Timing measurements:
[2025-06-19 07:56:01] 2025-06-19 07:55:30,158 | INFO     | . get job = 0 s
[2025-06-19 07:56:01] 2025-06-19 07:55:30,158 | INFO     | . initial setup = 2 s
[2025-06-19 07:56:01] 2025-06-19 07:55:30,158 | INFO     | . payload setup = 5 s
[2025-06-19 07:56:01] 2025-06-19 07:55:30,158 | INFO     | . stage-in = 0 s
[2025-06-19 07:56:01] 2025-06-19 07:55:30,159 | INFO     | . payload execution = 9126 s
[2025-06-19 07:56:01] 2025-06-19 07:55:30,159 | INFO     | . stage-out = 0 s
[2025-06-19 07:56:01] 2025-06-19 07:55:30,159 | INFO     | . log creation = 0 s
[2025-06-19 07:56:01] 2025-06-19 07:55:30,159 | INFO     | ..............................
[2025-06-19 07:56:01] 2025-06-19 07:55:30,246 | INFO     | 
[2025-06-19 07:56:01] 2025-06-19 07:55:30,246 | INFO     | job summary report
[2025-06-19 07:56:01] 2025-06-19 07:55:30,246 | INFO     | --------------------------------------------------
[2025-06-19 07:56:01] 2025-06-19 07:55:30,246 | INFO     | PanDA job id: 6699432316
[2025-06-19 07:56:01] 2025-06-19 07:55:30,247 | INFO     | task id: 45275585
[2025-06-19 07:56:01] 2025-06-19 07:55:30,247 | INFO     | errors: (none)
[2025-06-19 07:56:01] 2025-06-19 07:55:30,247 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-19 07:56:01] 2025-06-19 07:55:30,247 | INFO     | pilot state: finished 
[2025-06-19 07:56:01] 2025-06-19 07:55:30,247 | INFO     | transexitcode: 0
[2025-06-19 07:56:01] 2025-06-19 07:55:30,247 | INFO     | exeerrorcode: 0
[2025-06-19 07:56:01] 2025-06-19 07:55:30,247 | INFO     | exeerrordiag: 
[2025-06-19 07:56:01] 2025-06-19 07:55:30,247 | INFO     | exitcode: 0
[2025-06-19 07:56:01] 2025-06-19 07:55:30,248 | INFO     | exitmsg: OK
[2025-06-19 07:56:01] 2025-06-19 07:55:30,248 | INFO     | cpuconsumptiontime: 71281 s
[2025-06-19 07:56:01] 2025-06-19 07:55:30,248 | INFO     | nevents: 400
[2025-06-19 07:56:01] 2025-06-19 07:55:30,248 | INFO     | neventsw: 0
[2025-06-19 07:56:01] 2025-06-19 07:55:30,248 | INFO     | pid: 136128
[2025-06-19 07:56:01] 2025-06-19 07:55:30,248 | INFO     | pgrp: 136128
[2025-06-19 07:56:01] 2025-06-19 07:55:30,248 | INFO     | corecount: 12
[2025-06-19 07:56:01] 2025-06-19 07:55:30,248 | INFO     | event service: False
[2025-06-19 07:56:01] 2025-06-19 07:55:30,248 | INFO     | sizes: {0: 2377022, 4: 2377284, 11: 2377312, 9136: 2405600, 9137: 2414644, 9139: 2414700, 9144: 2415086}
[2025-06-19 07:56:01] 2025-06-19 07:55:30,248 | INFO     | --------------------------------------------------
[2025-06-19 07:56:01] 2025-06-19 07:55:30,249 | INFO     | 
[2025-06-19 07:56:01] 2025-06-19 07:55:30,249 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/5
[2025-06-19 07:56:01] 2025-06-19 07:55:30,265 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-19 07:56:01] 2025-06-19 07:55:30,266 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-19 07:56:01] 2025-06-19 07:55:30,266 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-19 07:56:01] 2025-06-19 07:55:30,266 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-19 07:56:01] 2025-06-19 07:55:30,266 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-19 07:56:01] 2025-06-19 07:55:30,266 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-19 07:56:01] 2025-06-19 07:55:30,266 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-19 07:56:01] 2025-06-19 07:55:30,266 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-19 07:56:01] 2025-06-19 07:55:30,266 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-19 07:56:01] 2025-06-19 07:55:30,266 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-19 07:56:01] 2025-06-19 07:55:30,266 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-19 07:56:01] 2025-06-19 07:55:30,266 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-19 07:56:01] 2025-06-19 07:55:30,266 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-19 07:56:01] 2025-06-19 07:55:30,267 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-19 07:56:01] 2025-06-19 07:55:30,267 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-19 07:56:01] 2025-06-19 07:55:30,267 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-19 07:56:01] 2025-06-19 07:55:30,267 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-19 07:56:01] 2025-06-19 07:55:30,267 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-19 07:56:01] 2025-06-19 07:55:30,267 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-19 07:56:01] 2025-06-19 07:55:30,267 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-19 07:56:01] 2025-06-19 07:55:30,267 | INFO     | job 6699432316 has completed (purged errors)
[2025-06-19 07:56:01] 2025-06-19 07:55:30,267 | INFO     | overall cleanup function is called
[2025-06-19 07:56:01] 2025-06-19 07:55:31,275 | INFO     | --- collectZombieJob: --- 10, [136128]
[2025-06-19 07:56:01] 2025-06-19 07:55:31,275 | INFO     | zombie collector waiting for pid 136128
[2025-06-19 07:56:01] 2025-06-19 07:55:31,275 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-19 07:56:01] 2025-06-19 07:55:31,275 | INFO     | collected zombie processes
[2025-06-19 07:56:01] 2025-06-19 07:55:31,275 | INFO     | will attempt to kill all subprocesses of pid=136128
[2025-06-19 07:56:01] 2025-06-19 07:55:31,424 | INFO     | process IDs to be killed: [136128] (in reverse order)
[2025-06-19 07:56:01] 2025-06-19 07:55:31,477 | WARNING  | found no corresponding commands to process id(s)
[2025-06-19 07:56:01] 2025-06-19 07:55:31,477 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-19 07:56:01] 2025-06-19 07:55:31,481 | INFO     | did not find any defunct processes belonging to 136128
[2025-06-19 07:56:01] 2025-06-19 07:55:31,484 | INFO     | did not find any defunct processes belonging to 136128
[2025-06-19 07:56:01] 2025-06-19 07:55:31,484 | INFO     | ready for new job
[2025-06-19 07:56:01] 2025-06-19 07:55:31,484 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-19 07:56:01] 2025-06-19 07:55:31,486 | INFO     | ***************************************
[2025-06-19 07:56:01] 2025-06-19 07:55:31,486 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-06-19 07:56:01] 2025-06-19 07:55:31,486 | INFO     | ***************************************
[2025-06-19 07:56:01] 2025-06-19 07:55:31,486 | INFO     | 
[2025-06-19 07:56:01] 2025-06-19 07:55:31,487 | INFO     | architecture information:
[2025-06-19 07:56:01] 2025-06-19 07:55:31,488 | INFO     | executing command: cat /etc/os-release
[2025-06-19 07:56:01] 2025-06-19 07:55:31,498 | INFO     | cat /etc/os-release:
[2025-06-19 07:56:01] NAME="CentOS Linux"
[2025-06-19 07:56:01] VERSION="7 (Core)"
[2025-06-19 07:56:01] ID="centos"
[2025-06-19 07:56:01] ID_LIKE="rhel fedora"
[2025-06-19 07:56:01] VERSION_ID="7"
[2025-06-19 07:56:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-19 07:56:01] ANSI_COLOR="0;31"
[2025-06-19 07:56:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-19 07:56:01] HOME_URL="https://www.centos.org/"
[2025-06-19 07:56:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-19 07:56:01] 
[2025-06-19 07:56:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-19 07:56:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-19 07:56:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-19 07:56:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-19 07:56:01] 
[2025-06-19 07:56:01] 2025-06-19 07:55:31,499 | INFO     | ***************************************
[2025-06-19 07:56:01] 2025-06-19 07:55:32,002 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/5
[2025-06-19 07:56:01] 2025-06-19 07:55:32,015 | INFO     | sufficient remaining disk space (95050268672 B)
[2025-06-19 07:56:01] 2025-06-19 07:55:32,015 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-19 07:56:01] 2025-06-19 07:55:32,015 | INFO     | current server update state: UPDATING_FINAL
[2025-06-19 07:56:01] 2025-06-19 07:55:32,016 | INFO     | update_server=False
[2025-06-19 07:56:01] 2025-06-19 07:55:32,016 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-19 07:56:01] 2025-06-19 07:55:32,016 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-19 07:56:01] 2025-06-19 07:55:32,016 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-19 07:56:01] 2025-06-19 07:55:32,016 | INFO     | aborting loop
[2025-06-19 07:56:01] 2025-06-19 07:55:32,202 | INFO     | all data control threads have been joined
[2025-06-19 07:56:01] 2025-06-19 07:55:32,238 | INFO     | all job control threads have been joined
[2025-06-19 07:56:01] 2025-06-19 07:55:32,535 | INFO     | all payload control threads have been joined
[2025-06-19 07:56:01] 2025-06-19 07:55:33,020 | INFO     | [job] retrieve thread has finished
[2025-06-19 07:56:01] 2025-06-19 07:55:33,021 | INFO     | [job] job monitor thread has finished
[2025-06-19 07:56:01] 2025-06-19 07:55:33,021 | INFO     | [job] queue monitor thread has finished
[2025-06-19 07:56:01] 2025-06-19 07:55:33,075 | INFO     | [payload] execute_payloads thread has finished
[2025-06-19 07:56:01] 2025-06-19 07:55:33,184 | INFO     | [payload] validate_pre thread has finished
[2025-06-19 07:56:01] 2025-06-19 07:55:33,207 | INFO     | [data] control thread has finished
[2025-06-19 07:56:01] 2025-06-19 07:55:33,242 | INFO     | [job] control thread has finished
[2025-06-19 07:56:01] 2025-06-19 07:55:33,314 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-19 07:56:01] 2025-06-19 07:55:33,502 | INFO     | [data] copytool_in thread has finished
[2025-06-19 07:56:01] 2025-06-19 07:55:33,540 | INFO     | [payload] control thread has finished
[2025-06-19 07:56:01] 2025-06-19 07:55:33,790 | INFO     | [payload] failed_post thread has finished
[2025-06-19 07:56:01] 2025-06-19 07:55:34,179 | INFO     | [job] validate thread has finished
[2025-06-19 07:56:01] 2025-06-19 07:55:34,355 | INFO     | [job] create_data_payload thread has finished
[2025-06-19 07:56:01] 2025-06-19 07:55:34,395 | INFO     | [payload] validate_post thread has finished
[2025-06-19 07:56:01] 2025-06-19 07:55:35,209 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-19 07:56:01] 2025-06-19 07:55:35,319 | INFO     | [data] copytool_out thread has finished
[2025-06-19 07:56:01] 2025-06-19 07:55:39,215 | INFO     | [data] queue_monitor thread has finished
[2025-06-19 07:56:01] 2025-06-19 07:55:42,509 | INFO     | job.realtimelogging is not enabled
[2025-06-19 07:56:01] 2025-06-19 07:55:43,515 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-19 07:56:01] 2025-06-19 07:55:43,951 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139793203541824)>', '<ExcThread(monitor, started 139792578762496)>']
[2025-06-19 07:56:01] 2025-06-19 07:55:48,966 | INFO     | all workflow threads have been joined
[2025-06-19 07:56:01] 2025-06-19 07:55:48,966 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-19 07:56:01] 2025-06-19 07:55:48,966 | INFO     | traces error code: 0
[2025-06-19 07:56:01] 2025-06-19 07:55:48,967 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-19 07:56:01] 2025-06-19 07:56:01,714 | INFO     | PID=117516 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-19 07:56:01] 2025-06-19 07:56:01,714 | INFO     | .. there are 4 such processes running
[2025-06-19 07:56:01] 2025-06-19 07:56:01,714 | INFO     | found 0 job(s) in 20 queues
[2025-06-19 07:56:01] 2025-06-19 07:56:01,715 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-19 07:56:01] 2025-06-19 07:56:01,715 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-19 07:56:01] 2025-06-19 07:56:01,715 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-19 07:56:01] 2025-06-19 07:56:01,715 | CRITICAL | thread 'MainThread' is not alive
[2025-06-19 07:56:01] 2025-06-19 07:56:01,715 | INFO     | [monitor] control thread has ended
[2025-06-19 07:56:01] 2025-06-19 07:56:01,816 [wrapper] ==== pilot stdout END ====
[2025-06-19 07:56:01] 2025-06-19 07:56:01,819 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-19 07:56:01] 2025-06-19 07:56:01,821 [wrapper] pilotpid: 117516
[2025-06-19 07:56:01] 2025-06-19 07:56:01,824 [wrapper] Pilot exit status: 0
[2025-06-19 07:56:01] 2025-06-19 07:56:01,832 [wrapper] pandaids: 6699432316
[2025-06-19 07:56:01] 2025-06-19 07:56:01,858 [wrapper] cleanup supervisor_pilot  180497 117517
[2025-06-19 07:56:01] 2025-06-19 07:56:01,862 [wrapper] Test setup, not cleaning
[2025-06-19 07:56:01] 2025-06-19 07:56:01,864 [wrapper] apfmon messages muted
[2025-06-19 07:56:01] 2025-06-19 07:56:01,867 [wrapper] ==== wrapper stdout END ====
[2025-06-19 07:56:01] 2025-06-19 07:56:01,869 [wrapper] ==== wrapper stderr END ====
[2025-06-19 07:56:01]  *** Error codes and diagnostics ***
[2025-06-19 07:56:01]     "exeErrorCode": 0,
[2025-06-19 07:56:01]     "exeErrorDiag": "",
[2025-06-19 07:56:01]     "pilotErrorCode": 0,
[2025-06-19 07:56:01]     "pilotErrorDiag": "",
[2025-06-19 07:56:01]  *** Listing of results directory ***
[2025-06-19 07:56:01] total 524276
[2025-06-19 07:56:01] -rw-r--r-- 1 boinc boinc    530466 Jun 18 20:28 pilot3.tar.gz
[2025-06-19 07:56:01] -rwx------ 1 boinc boinc     36245 Jun 18 20:33 runpilot2-wrapper.sh
[2025-06-19 07:56:01] -rw-r--r-- 1 boinc boinc      5112 Jun 18 20:33 queuedata.json
[2025-06-19 07:56:01] -rw-rw-r-- 1 boinc boinc       100 Jun 19 05:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-19 07:56:01] -rwxr-xr-x 1 boinc boinc      7986 Jun 19 05:22 run_atlas
[2025-06-19 07:56:01] -rw-rw-r-- 1 boinc boinc       105 Jun 19 05:22 job.xml
[2025-06-19 07:56:01] -rw-rw-r-- 1 boinc boinc      6597 Jun 19 05:22 init_data.xml
[2025-06-19 07:56:01] -rw-r--r-- 2 boinc boinc 296294286 Jun 19 05:22 EVNT.45275579._000111.pool.root.1
[2025-06-19 07:56:01] -rw-r--r-- 2 boinc boinc     15095 Jun 19 05:22 start_atlas.sh
[2025-06-19 07:56:01] drwxrwx--x 2 boinc boinc      4096 Jun 19 05:22 shared
[2025-06-19 07:56:01] -rw-r--r-- 2 boinc boinc    542886 Jun 19 05:22 input.tar.gz
[2025-06-19 07:56:01] -rw-rw-r-- 1 boinc boinc         0 Jun 19 05:22 boinc_lockfile
[2025-06-19 07:56:01] -rw-rw-r-- 1 boinc boinc      2542 Jun 19 05:22 pandaJob.out
[2025-06-19 07:56:01] -rw------- 1 boinc boinc    966412 Jun 19 05:22 agis_schedconf.cvmfs.json
[2025-06-19 07:56:01] -rw------- 1 boinc boinc   1582103 Jun 19 05:22 agis_ddmendpoints.agis.ALL.json
[2025-06-19 07:56:01] drwx------ 4 boinc boinc      4096 Jun 19 05:22 pilot3
[2025-06-19 07:56:01] -rw-rw-r-- 1 boinc boinc       529 Jun 19 07:54 boinc_task_state.xml
[2025-06-19 07:56:01] -rw------- 1 boinc boinc 234100339 Jun 19 07:54 HITS.45275585._002550.pool.root.1
[2025-06-19 07:56:01] -rw------- 1 boinc boinc      1030 Jun 19 07:55 memory_monitor_summary.json
[2025-06-19 07:56:01] -rw------- 1 boinc boinc    421991 Jun 19 07:55 log.45275585._002550.job.log.tgz.1
[2025-06-19 07:56:01] -rw------- 1 boinc boinc      7775 Jun 19 07:55 heartbeat.json
[2025-06-19 07:56:01] -rw-rw-r-- 1 boinc boinc        27 Jun 19 07:55 wrapper_checkpoint.txt
[2025-06-19 07:56:01] -rw-rw-r-- 1 boinc boinc      8192 Jun 19 07:55 boinc_mmap_file
[2025-06-19 07:56:01] -rw------- 1 boinc boinc        95 Jun 19 07:56 pilot_heartbeat.json
[2025-06-19 07:56:01] -rw------- 1 boinc boinc       891 Jun 19 07:56 pilotlog.txt
[2025-06-19 07:56:01] -rw------- 1 boinc boinc    884629 Jun 19 07:56 log.45275585._002550.job.log.1
[2025-06-19 07:56:01] -rw------- 1 boinc boinc       357 Jun 19 07:56 output.list
[2025-06-19 07:56:01] -rw-rw-r-- 1 boinc boinc       620 Jun 19 07:56 runtime_log
[2025-06-19 07:56:01] -rw------- 1 boinc boinc   1320960 Jun 19 07:56 result.tar.gz
[2025-06-19 07:56:01] -rw-rw-r-- 1 boinc boinc      8969 Jun 19 07:56 runtime_log.err
[2025-06-19 07:56:01] -rw------- 1 boinc boinc       655 Jun 19 07:56 hscLDmGeEm7n9Rq4apOajLDm4fhM0noT9bVof3QYDmE0bKDmdWQ0Dn.diag
[2025-06-19 07:56:01] -rw-rw-r-- 1 boinc boinc     20865 Jun 19 07:56 stderr.txt
[2025-06-19 07:56:01] HITS file was successfully produced:
[2025-06-19 07:56:01] -rw------- 1 boinc boinc 234100339 Jun 19 07:54 shared/HITS.pool.root.1
[2025-06-19 07:56:01]  *** Contents of shared directory: ***
[2025-06-19 07:56:01] total 519816
[2025-06-19 07:56:01] -rw-r--r-- 2 boinc boinc 296294286 Jun 19 05:22 ATLAS.root_0
[2025-06-19 07:56:01] -rw-r--r-- 2 boinc boinc     15095 Jun 19 05:22 start_atlas.sh
[2025-06-19 07:56:01] -rw-r--r-- 2 boinc boinc    542886 Jun 19 05:22 input.tar.gz
[2025-06-19 07:56:01] -rw------- 1 boinc boinc 234100339 Jun 19 07:54 HITS.pool.root.1
[2025-06-19 07:56:01] -rw------- 1 boinc boinc   1320960 Jun 19 07:56 result.tar.gz
07:56:03 (111842): run_atlas exited; CPU time 71380.317400
07:56:03 (111842): called boinc_finish(0)

</stderr_txt>
]]>

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