Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-19 07:42:27 (63710): Detected: vboxwrapper 26206
2025-06-19 07:42:27 (63710): Detected: BOINC client v8.0.2
2025-06-19 07:42:27 (63710): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-06-19 07:42:27 (63710): Detected: Sandbox Configuration Enabled
2025-06-19 07:42:27 (63710): Successfully copied 'init_data.xml' to the shared directory.
2025-06-19 07:42:27 (63710): Create VM. (boinc_d5ee3edf259f0bd3, slot#3)
2025-06-19 07:42:27 (63710): Setting Memory Size for VM. (4300MB)
2025-06-19 07:42:28 (63710): Setting CPU Count for VM. (3)
2025-06-19 07:42:28 (63710): Setting Chipset Options for VM.
2025-06-19 07:42:28 (63710): Setting Graphics Controller Options for VM.
2025-06-19 07:42:28 (63710): Setting Boot Options for VM.
2025-06-19 07:42:28 (63710): Setting Network Configuration for NAT.
2025-06-19 07:42:28 (63710): Enabling VM Network Access.
2025-06-19 07:42:28 (63710): Disabling USB Support for VM.
2025-06-19 07:42:28 (63710): Disabling COM Port Support for VM.
2025-06-19 07:42:28 (63710): Disabling Audio Support for VM.
2025-06-19 07:42:28 (63710): Disabling Clipboard Support for VM.
2025-06-19 07:42:28 (63710): Disabling Drag and Drop Support for VM.
2025-06-19 07:42:28 (63710): Adding storage controller(s) to VM.
2025-06-19 07:42:28 (63710): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-19 07:42:29 (63710): Adding VirtualBox Guest Additions to VM.
2025-06-19 07:42:29 (63710): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-19 07:42:30 (63710): forwarding host port 55257 to guest port 80
2025-06-19 07:42:30 (63710): Enabling remote desktop for VM.
2025-06-19 07:42:30 (63710): Required extension pack not installed, remote desktop not enabled.
2025-06-19 07:42:30 (63710): Enabling shared directory for VM.
2025-06-19 07:42:30 (63710): Starting VM using VBoxManage interface. (boinc_d5ee3edf259f0bd3, slot#3)
2025-06-19 07:42:33 (63710): Successfully started VM. (PID = '63780')
2025-06-19 07:42:33 (63710): Reporting VM Process ID to BOINC.
2025-06-19 07:42:33 (63710): Guest Log: BIOS: VirtualBox 7.1.8
2025-06-19 07:42:33 (63710): Guest Log: CPUID EDX: 0x178bfbff
2025-06-19 07:42:33 (63710): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-19 07:42:33 (63710): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-19 07:42:33 (63710): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-19 07:42:33 (63710): Detected: Web Application Enabled (http://localhost:55257)
2025-06-19 07:42:34 (63710): VM state change detected. (old = 'running', new = 'paused')
2025-06-19 07:42:51 (63710): Preference change detected
2025-06-19 07:42:51 (63710): Setting CPU throttle for VM. (80%)
2025-06-19 07:42:52 (63710): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-19 07:42:52 (63710): VM state change detected. (old = 'paused', new = 'running')
2025-06-19 07:42:53 (63710): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-19 07:42:53 (63710): Guest Log: BIOS: Booting from Hard Disk...
2025-06-19 07:42:57 (63710): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-19 07:42:57 (63710): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-19 07:42:57 (63710): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-19 07:43:12 (63710): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-19 07:43:12 (63710): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-19 07:43:32 (63710): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-19 07:43:32 (63710): Guest Log: 00:00:00.000275 main     Log opened 2025-06-18T22:43:12.158986000Z
2025-06-19 07:43:32 (63710): Guest Log: 00:00:00.000468 main     OS Product: Linux
2025-06-19 07:43:32 (63710): Guest Log: 00:00:00.000536 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-19 07:43:32 (63710): Guest Log: 00:00:00.000593 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-19 07:43:32 (63710): Guest Log: 00:00:00.000651 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-19 07:43:32 (63710): Guest Log: 00:00:00.000653 main     Process ID: 1033
2025-06-19 07:43:32 (63710): Guest Log: 00:00:00.000654 main     Package type: LINUX_64BITS_GENERIC
2025-06-19 07:43:32 (63710): Guest Log: 00:00:00.004330 main     5.2.32 r132073 started. Verbose level = 0
2025-06-19 07:43:38 (63710): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-19 07:43:38 (63710): Guest Log: [INFO] Mounting shared directory
2025-06-19 07:43:39 (63710): Guest Log: [INFO] Checking for init_data.xml
2025-06-19 07:43:52 (63710): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-19 07:43:52 (63710): Guest Log: [INFO] Detected branch: prod
2025-06-19 07:43:52 (63710): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-19 07:43:52 (63710): Guest Log: Copying input files
2025-06-19 07:45:15 (63710): Guest Log: Copied input files into RunAtlas.
2025-06-19 07:45:39 (63710): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-19 07:45:39 (63710): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-19 07:45:39 (63710): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-19 07:45:39 (63710): Guest Log: Further information can be found at the LHC@home message board.
2025-06-19 07:46:17 (63710): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-19 07:46:18 (63710): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-19 07:46:18 (63710): Guest Log: 2.6.3.0 1574 2 30116 147319 3 1 3117618 4096000 0 65024 0 0 n/a 0 0 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-06-19 07:49:18 (63710): Guest Log: copied the webapp to /var/www
2025-06-19 07:49:43 (63710): Guest Log: ATHENA_PROC_NUMBER=3
2025-06-19 07:49:43 (63710): Guest Log: ATHENA_CORE_NUMBER=3
2025-06-19 07:50:08 (63710): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-19 07:50:08 (63710): Guest Log:  *** Starting ATLAS job. (PandaID=6699432955 taskID=45275585) ***
2025-06-19 08:19:15 (63710): Guest Log:  *** Job finished ***
2025-06-19 08:19:15 (63710): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-19 08:19:15 (63710): Guest Log: 2025-06-18 23:17:51,400 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139824505034560)>', '<ExcThread(validate_post, started 139823893423872)>']
2025-06-19 08:19:15 (63710): Guest Log: 2025-06-18 23:17:53,407 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139824505034560)>', '<ExcThread(validate_post, started 139823893423872)>']
2025-06-19 08:19:15 (63710): Guest Log: 2025-06-18 23:17:55,411 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139824505034560)>', '<ExcThread(validate_post, started 139823893423872)>']
2025-06-19 08:19:15 (63710): Guest Log: 2025-06-18 23:17:56,819 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139824505034560)>', '<ExcThread(validate_post, started 139823893423872)>']
2025-06-19 08:19:15 (63710): Guest Log: 2025-06-18 23:17:56,819 | INFO     | [payload] validate_post thread has finished
2025-06-19 08:19:15 (63710): Guest Log: 2025-06-18 23:17:57,419 | INFO     | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 139824505034560)>'])
2025-06-19 08:19:15 (63710): Guest Log: 2025-06-18 23:18:02,419 | INFO     | all workflow threads have been joined
2025-06-19 08:19:15 (63710): Guest Log: 2025-06-18 23:18:02,420 | INFO     | end of generic workflow (traces error code: 0)
2025-06-19 08:19:15 (63710): Guest Log: 2025-06-18 23:18:02,420 | INFO     | traces error code: 0
2025-06-19 08:19:15 (63710): Guest Log: 2025-06-18 23:18:02,420 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-19 08:19:15 (63710): Guest Log: 2025-06-18 23:18:02,580 [wrapper] ==== pilot stdout END ====
2025-06-19 08:19:15 (63710): Guest Log: 2025-06-18 23:18:02,597 [wrapper] ==== wrapper stdout RESUME ====
2025-06-19 08:19:15 (63710): Guest Log: 2025-06-18 23:18:02,614 [wrapper] pilotpid: 5909
2025-06-19 08:19:15 (63710): Guest Log: 2025-06-18 23:18:02,631 [wrapper] Pilot exit status: 0
2025-06-19 08:19:15 (63710): Guest Log: 2025-06-18 23:18:54,638 [wrapper] pandaids: 6699432955
2025-06-19 08:19:15 (63710): Guest Log: 2025-06-18 23:18:54,752 [wrapper] cleanup supervisor_pilot 20022 5910
2025-06-19 08:19:15 (63710): Guest Log: 2025-06-18 23:18:54,765 [wrapper] Test setup, not cleaning
2025-06-19 08:19:15 (63710): Guest Log: 2025-06-18 23:18:54,777 [wrapper] apfmon messages muted
2025-06-19 08:19:15 (63710): Guest Log: 2025-06-18 23:18:54,790 [wrapper] ==== wrapper stdout END ====
2025-06-19 08:19:15 (63710): Guest Log: 2025-06-18 23:18:54,802 [wrapper] ==== wrapper stderr END ====
2025-06-19 08:19:15 (63710): Guest Log:  *** Error codes and diagnostics ***
2025-06-19 08:19:15 (63710): Guest Log:     "exeErrorCode": 0,
2025-06-19 08:19:15 (63710): Guest Log:     "exeErrorDiag": "",
2025-06-19 08:19:15 (63710): Guest Log:     "pilotErrorCode": 1305,
2025-06-19 08:19:15 (63710): Guest Log:     "pilotErrorDiag": "Failed to execute payload:/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/utilities/validator.sh: line 409: b_item}_setupBefb_item}_setupBefore: command not found\n/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/utilities/checkAtlasLocalRoot.sh: line 40: /utilities/getOSType.sh: No such file or directory\n/cvmfs/at",
2025-06-19 08:19:15 (63710): Guest Log:  *** Listing of results directory ***
2025-06-19 08:19:16 (63710): Guest Log: total 4140
2025-06-19 08:19:16 (63710): Guest Log: -rw-r--r--. 1 atlas atlas  530466 Jun 18 20:41 pilot3.tar.gz
2025-06-19 08:19:16 (63710): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Jun 18 20:44 queuedata.json
2025-06-19 08:19:16 (63710): Guest Log: -rwx------. 1 atlas atlas   36245 Jun 18 20:45 runpilot2-wrapper.sh
2025-06-19 08:19:16 (63710): Guest Log: -rw-r-----. 1 atlas atlas   15095 Jun 18 22:43 start_atlas.sh
2025-06-19 08:19:16 (63710): Guest Log: -rw-r-----. 1 atlas atlas  542883 Jun 18 22:43 input.tar.gz
2025-06-19 08:19:16 (63710): Guest Log: -rw-r--r--. 1 atlas atlas    8848 Jun 18 22:43 init_data.xml
2025-06-19 08:19:16 (63710): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jun 18 22:44 EVNT.45275579._000126.pool.root.1 -> /data/./ATLAS.root_0
2025-06-19 08:19:16 (63710): Guest Log: -rw-r--r--. 1 atlas atlas    2542 Jun 18 22:49 pandaJob.out
2025-06-19 08:19:16 (63710): Guest Log: -rw-------. 1 atlas atlas    4726 Jun 18 22:52 agis_schedconf.agis.BOINC_MCORE.json
2025-06-19 08:19:16 (63710): Guest Log: -rw-------. 1 atlas atlas 1582103 Jun 18 22:52 agis_ddmendpoints.agis.ALL.json
2025-06-19 08:19:16 (63710): Guest Log: -rw-------. 1 atlas atlas  966312 Jun 18 22:52 agis_schedconf.cvmfs.json
2025-06-19 08:19:16 (63710): Guest Log: drwx------. 4 atlas atlas    4096 Jun 18 22:52 pilot3
2025-06-19 08:19:16 (63710): Guest Log: -rw-------. 1 atlas atlas   36172 Jun 18 22:54 hs_err_pid14356.log
2025-06-19 08:19:16 (63710): Guest Log: -rw-------. 1 atlas atlas     988 Jun 18 22:57 memory_monitor_summary.json
2025-06-19 08:19:16 (63710): Guest Log: -rw-------. 1 atlas atlas   11832 Jun 18 22:57 log.45275585._002828.job.log.tgz.1
2025-06-19 08:19:16 (63710): Guest Log: -rw-------. 1 atlas atlas      95 Jun 18 23:00 pilot_heartbeat.json
2025-06-19 08:19:16 (63710): Guest Log: -rw-------. 1 atlas atlas    2894 Jun 18 23:00 heartbeat.json
2025-06-19 08:19:16 (63710): Guest Log: -rw-------. 1 atlas atlas   67744 Jun 18 23:18 pilotlog.txt
2025-06-19 08:19:16 (63710): Guest Log: -rw-------. 1 atlas atlas  166444 Jun 18 23:18 log.45275585._002828.job.log.1
2025-06-19 08:19:16 (63710): Guest Log: -rw-------. 1 atlas atlas     188 Jun 18 23:18 output.list
2025-06-19 08:19:16 (63710): Guest Log: -rw-r--r--. 1 atlas atlas     620 Jun 18 23:18 runtime_log
2025-06-19 08:19:16 (63710): Guest Log: -rw-------. 1 atlas atlas  194560 Jun 18 23:18 result.tar.gz
2025-06-19 08:19:16 (63710): Guest Log: -rw-r--r--. 1 atlas atlas    8446 Jun 18 23:18 runtime_log.err
2025-06-19 08:19:16 (63710): Guest Log: -rw-------. 1 atlas atlas     648 Jun 18 23:18 karMDmJqEm7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm6hpKDmZkDwAn.diag
2025-06-19 08:19:16 (63710): Guest Log: Looking for outputfile HITS.45275585._002828.pool.root.1
2025-06-19 08:19:16 (63710): Guest Log: No HITS file was produced
2025-06-19 08:19:16 (63710): Guest Log: Successfully finished the ATLAS job!
2025-06-19 08:19:16 (63710): Guest Log: Copying the results back to the shared directory!
2025-06-19 08:20:06 (63710): Guest Log:  *** Contents of shared directory: ***
2025-06-19 08:20:31 (63710): Guest Log: total 294644
2025-06-19 08:20:31 (63710): Guest Log: -rw-rw----. 1 root root 292013403 Jun 18 22:42 ATLAS.root_0
2025-06-19 08:20:31 (63710): Guest Log: -rw-rw-r--. 1 root root      8848 Jun 18 22:42 init_data.xml
2025-06-19 08:20:31 (63710): Guest Log: -rw-rw----. 1 root root    542883 Jun 18 22:42 input.tar.gz
2025-06-19 08:20:31 (63710): Guest Log: -rw-r--r--. 1 root root    194560 Jun 18 23:19 result.tar.gz
2025-06-19 08:20:31 (63710): Guest Log: -rw-rw----. 1 root root     15095 Jun 18 22:42 start_atlas.sh
2025-06-19 08:20:31 (63710): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-19 08:20:56 (63710): VM Completion File Detected.
2025-06-19 08:20:56 (63710): Powering off VM.
2025-06-19 08:20:56 (63710): Successfully stopped VM.
2025-06-19 08:20:56 (63710): Deregistering VM. (boinc_d5ee3edf259f0bd3, slot#3)
2025-06-19 08:20:56 (63710): Removing network bandwidth throttle group from VM.
2025-06-19 08:20:56 (63710): Removing VM from VirtualBox.
08:21:01 (63710): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN