Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:04:14 (22776): wrapper (7.7.26015): starting
22:04:14 (22776): wrapper: running run_atlas (--nthreads 12)
[2025-06-06 22:04:14] Arguments: --nthreads 12
[2025-06-06 22:04:14] Threads: 12
[2025-06-06 22:04:14] Checking for CVMFS
[2025-06-06 22:04:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 22:04:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 22:04:14] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 22:04:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 22:04:14] 2.11.2.0 2979 39378 94848 146881 2 1 10940597 20275200 1 130560 0 16710929 99.983 6776044 8107 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-06 22:04:14] CVMFS is ok
[2025-06-06 22:04:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 22:04:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 22:04:14] Further information can be found at the LHC@home message board.
[2025-06-06 22:04:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 22:04:14] Checking for apptainer binary...
[2025-06-06 22:04:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 22:04:14] Running /usr/bin/apptainer --version
[2025-06-06 22:04:14] apptainer version 1.3.2-1.el7
[2025-06-06 22:04:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 22:04:16] c-205-7.aglt2.org
[2025-06-06 22:04:16] apptainer works
[2025-06-06 22:04:16] Set ATHENA_PROC_NUMBER=12
[2025-06-06 22:04:16] Set ATHENA_CORE_NUMBER=12
[2025-06-06 22:04:16] Starting ATLAS job with PandaID=6682897633
[2025-06-06 22:04:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 23:07:31]  *** The last 200 lines of the pilot log: ***
[2025-06-06 23:07:31]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 23:07:31]  replicas=None
[2025-06-06 23:07:31]  scope=mc23_13p6TeV
[2025-06-06 23:07:31]  status=None
[2025-06-06 23:07:31]  status_code=0
[2025-06-06 23:07:31]  storage_token=
[2025-06-06 23:07:31]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6682897633/log.45006595._057181.job.log.tgz.1
[2025-06-06 23:07:31]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/94/e0/log.45006595._057181.job.log.tgz.1
[2025-06-06 23:07:31]  workdir=None
[2025-06-06 23:07:31] ]
[2025-06-06 23:07:31] 2025-06-07 03:07:03,163 | INFO     | transferring file log.45006595._057181.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6682897633/log.45006595._057181.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-06 23:07:31] 2025-06-07 03:07:03,163 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6682897633/log.45006595._057181.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._057181.job
[2025-06-06 23:07:31] 2025-06-07 03:07:03,186 | INFO     | adding to output.list: log.45006595._057181.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/94/e0/log.45006595._057181.job.log.tg
[2025-06-06 23:07:31] 2025-06-07 03:07:03,187 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 23:07:31] 2025-06-07 03:07:03,187 | INFO     | summary of transferred files:
[2025-06-06 23:07:31] 2025-06-07 03:07:03,187 | INFO     |  -- lfn=log.45006595._057181.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 23:07:31] 2025-06-07 03:07:03,188 | INFO     | stage-out finished correctly
[2025-06-06 23:07:31] 2025-06-07 03:07:03,881 | INFO     | monitor loop #284: job 0:6682897633 is in state 'finished'
[2025-06-06 23:07:31] 2025-06-07 03:07:03,882 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 23:07:31] 2025-06-07 03:07:04,851 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 23:07:31] 2025-06-07 03:07:06,390 | INFO     | monitor loop #285: job 0:6682897633 is in state 'finished'
[2025-06-06 23:07:31] 2025-06-07 03:07:06,390 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 23:07:31] 2025-06-07 03:07:06,802 | INFO     | job 6682897633 has state=finished
[2025-06-06 23:07:31] 2025-06-07 03:07:06,802 | INFO     | preparing for final server update for job 6682897633 in state='finished'
[2025-06-06 23:07:31] 2025-06-07 03:07:06,803 | INFO     | this job has now completed (state=finished)
[2025-06-06 23:07:31] 2025-06-07 03:07:06,803 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 23:07:31] 2025-06-07 03:07:06,803 | INFO     | log transfer has been attempted: DONE
[2025-06-06 23:07:31] 2025-06-07 03:07:06,803 | INFO     | job 6682897633 has finished - writing final server update
[2025-06-06 23:07:31] 2025-06-07 03:07:06,804 | INFO     | total number of processed events: 400 (read)
[2025-06-06 23:07:31] 2025-06-07 03:07:06,804 | INFO     | executing command: lscpu
[2025-06-06 23:07:31] 2025-06-07 03:07:06,830 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 23:07:31] 2025-06-07 03:07:08,893 | INFO     | monitor loop #286: job 0:6682897633 is in state 'finished'
[2025-06-06 23:07:31] 2025-06-07 03:07:08,893 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 23:07:31] 2025-06-07 03:07:11,403 | INFO     | monitor loop #287: job 0:6682897633 is in state 'finished'
[2025-06-06 23:07:31] 2025-06-07 03:07:11,403 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 23:07:31] 2025-06-07 03:07:11,453 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-06 23:07:31] 2025-06-07 03:07:11,456 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-06-06 23:07:31] 2025-06-07 03:07:11,458 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6682897633/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 23:07:31] 2025-06-07 03:07:11,459 | INFO     | extracted standard info from prmon json
[2025-06-06 23:07:31] 2025-06-07 03:07:11,459 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 23:07:31] 2025-06-07 03:07:11,459 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 23:07:31] 2025-06-07 03:07:11,460 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 23:07:31] 2025-06-07 03:07:11,460 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 23:07:31] 2025-06-07 03:07:11,462 | INFO     | fitting pss+swap vs Time
[2025-06-06 23:07:31] 2025-06-07 03:07:11,462 | INFO     | sum of square deviations: 48810217.5
[2025-06-06 23:07:31] 2025-06-07 03:07:11,462 | INFO     | sum of deviations: 361722253.00000006
[2025-06-06 23:07:31] 2025-06-07 03:07:11,462 | INFO     | mean x: 1749263822.5
[2025-06-06 23:07:31] 2025-06-07 03:07:11,462 | INFO     | mean y: 2663943.407407407
[2025-06-06 23:07:31] 2025-06-07 03:07:11,463 | INFO     | -- intersect: -12960762227.887407
[2025-06-06 23:07:31] 2025-06-07 03:07:11,463 | INFO     | intersect: -12960762227.887407
[2025-06-06 23:07:31] 2025-06-07 03:07:11,463 | INFO     | chi2: 0.0016862425532815032
[2025-06-06 23:07:31] 2025-06-07 03:07:11,463 | INFO     | -- intersect: -12960762227.887407
[2025-06-06 23:07:31] 2025-06-07 03:07:11,463 | INFO     | current memory leak: 7.41 B/s (using 54 data points, chi2=0.00)
[2025-06-06 23:07:31] 2025-06-07 03:07:11,464 | INFO     | could have reported an average CPU frequency of 1995 MHz (6 samples)
[2025-06-06 23:07:31] 2025-06-07 03:07:11,464 | INFO     | ..............................
[2025-06-06 23:07:31] 2025-06-07 03:07:11,464 | INFO     | . Timing measurements:
[2025-06-06 23:07:31] 2025-06-07 03:07:11,464 | INFO     | . get job = 0 s
[2025-06-06 23:07:31] 2025-06-07 03:07:11,464 | INFO     | . initial setup = 2 s
[2025-06-06 23:07:31] 2025-06-07 03:07:11,464 | INFO     | . payload setup = 9 s
[2025-06-06 23:07:31] 2025-06-07 03:07:11,464 | INFO     | . stage-in = 0 s
[2025-06-06 23:07:31] 2025-06-07 03:07:11,465 | INFO     | . payload execution = 3722 s
[2025-06-06 23:07:31] 2025-06-07 03:07:11,465 | INFO     | . stage-out = 0 s
[2025-06-06 23:07:31] 2025-06-07 03:07:11,465 | INFO     | . log creation = 0 s
[2025-06-06 23:07:31] 2025-06-07 03:07:11,465 | INFO     | ..............................
[2025-06-06 23:07:31] 2025-06-07 03:07:11,997 | INFO     | 
[2025-06-06 23:07:31] 2025-06-07 03:07:11,998 | INFO     | job summary report
[2025-06-06 23:07:31] 2025-06-07 03:07:11,998 | INFO     | --------------------------------------------------
[2025-06-06 23:07:31] 2025-06-07 03:07:11,998 | INFO     | PanDA job id: 6682897633
[2025-06-06 23:07:31] 2025-06-07 03:07:11,998 | INFO     | task id: 45006595
[2025-06-06 23:07:31] 2025-06-07 03:07:11,998 | INFO     | errors: (none)
[2025-06-06 23:07:31] 2025-06-07 03:07:11,999 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 23:07:31] 2025-06-07 03:07:11,999 | INFO     | pilot state: finished 
[2025-06-06 23:07:31] 2025-06-07 03:07:11,999 | INFO     | transexitcode: 0
[2025-06-06 23:07:31] 2025-06-07 03:07:11,999 | INFO     | exeerrorcode: 0
[2025-06-06 23:07:31] 2025-06-07 03:07:11,999 | INFO     | exeerrordiag: 
[2025-06-06 23:07:31] 2025-06-07 03:07:11,999 | INFO     | exitcode: 0
[2025-06-06 23:07:31] 2025-06-07 03:07:12,000 | INFO     | exitmsg: OK
[2025-06-06 23:07:31] 2025-06-07 03:07:12,000 | INFO     | cpuconsumptiontime: 40517 s
[2025-06-06 23:07:31] 2025-06-07 03:07:12,000 | INFO     | nevents: 400
[2025-06-06 23:07:31] 2025-06-07 03:07:12,000 | INFO     | neventsw: 0
[2025-06-06 23:07:31] 2025-06-07 03:07:12,000 | INFO     | pid: 392
[2025-06-06 23:07:31] 2025-06-07 03:07:12,000 | INFO     | pgrp: 392
[2025-06-06 23:07:31] 2025-06-07 03:07:12,000 | INFO     | corecount: 12
[2025-06-06 23:07:31] 2025-06-07 03:07:12,001 | INFO     | event service: False
[2025-06-06 23:07:31] 2025-06-07 03:07:12,001 | INFO     | sizes: {0: 2397630, 5: 2397892, 11: 2397948, 3735: 2423669, 3736: 2432665, 3738: 2432665, 3745: 2432987}
[2025-06-06 23:07:31] 2025-06-07 03:07:12,001 | INFO     | --------------------------------------------------
[2025-06-06 23:07:31] 2025-06-07 03:07:12,001 | INFO     | 
[2025-06-06 23:07:31] 2025-06-07 03:07:12,001 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-06 23:07:31] 2025-06-07 03:07:12,059 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 23:07:31] 2025-06-07 03:07:12,060 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 23:07:31] 2025-06-07 03:07:12,060 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 23:07:31] 2025-06-07 03:07:12,060 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 23:07:31] 2025-06-07 03:07:12,060 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 23:07:31] 2025-06-07 03:07:12,060 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 23:07:31] 2025-06-07 03:07:12,060 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 23:07:31] 2025-06-07 03:07:12,061 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 23:07:31] 2025-06-07 03:07:12,061 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 23:07:31] 2025-06-07 03:07:12,061 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 23:07:31] 2025-06-07 03:07:12,061 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 23:07:31] 2025-06-07 03:07:12,061 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 23:07:31] 2025-06-07 03:07:12,061 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 23:07:31] 2025-06-07 03:07:12,062 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 23:07:31] 2025-06-07 03:07:12,062 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 23:07:31] 2025-06-07 03:07:12,062 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 23:07:31] 2025-06-07 03:07:12,062 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 23:07:31] 2025-06-07 03:07:12,062 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 23:07:31] 2025-06-07 03:07:12,063 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 23:07:31] 2025-06-07 03:07:12,063 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 23:07:31] 2025-06-07 03:07:12,063 | INFO     | job 6682897633 has completed (purged errors)
[2025-06-06 23:07:31] 2025-06-07 03:07:12,063 | INFO     | overall cleanup function is called
[2025-06-06 23:07:31] 2025-06-07 03:07:13,070 | INFO     | --- collectZombieJob: --- 10, [392]
[2025-06-06 23:07:31] 2025-06-07 03:07:13,070 | INFO     | zombie collector waiting for pid 392
[2025-06-06 23:07:31] 2025-06-07 03:07:13,070 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 23:07:31] 2025-06-07 03:07:13,070 | INFO     | collected zombie processes
[2025-06-06 23:07:31] 2025-06-07 03:07:13,070 | INFO     | will attempt to kill all subprocesses of pid=392
[2025-06-06 23:07:31] 2025-06-07 03:07:13,160 | INFO     | process IDs to be killed: [392] (in reverse order)
[2025-06-06 23:07:31] 2025-06-07 03:07:13,208 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 23:07:31] 2025-06-07 03:07:13,209 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 23:07:31] 2025-06-07 03:07:13,213 | INFO     | did not find any defunct processes belonging to 392
[2025-06-06 23:07:31] 2025-06-07 03:07:13,216 | INFO     | did not find any defunct processes belonging to 392
[2025-06-06 23:07:31] 2025-06-07 03:07:13,217 | INFO     | ready for new job
[2025-06-06 23:07:31] 2025-06-07 03:07:13,217 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 23:07:31] 2025-06-07 03:07:13,218 | INFO     | ***************************************
[2025-06-06 23:07:31] 2025-06-07 03:07:13,218 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-06 23:07:31] 2025-06-07 03:07:13,218 | INFO     | ***************************************
[2025-06-06 23:07:31] 2025-06-07 03:07:13,218 | INFO     | 
[2025-06-06 23:07:31] 2025-06-07 03:07:13,218 | INFO     | architecture information:
[2025-06-06 23:07:31] 2025-06-07 03:07:13,219 | INFO     | executing command: cat /etc/os-release
[2025-06-06 23:07:31] 2025-06-07 03:07:13,232 | INFO     | cat /etc/os-release:
[2025-06-06 23:07:31] NAME="CentOS Linux"
[2025-06-06 23:07:31] VERSION="7 (Core)"
[2025-06-06 23:07:31] ID="centos"
[2025-06-06 23:07:31] ID_LIKE="rhel fedora"
[2025-06-06 23:07:31] VERSION_ID="7"
[2025-06-06 23:07:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 23:07:31] ANSI_COLOR="0;31"
[2025-06-06 23:07:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 23:07:31] HOME_URL="https://www.centos.org/"
[2025-06-06 23:07:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 23:07:31] 
[2025-06-06 23:07:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 23:07:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 23:07:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 23:07:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 23:07:31] 
[2025-06-06 23:07:31] 2025-06-07 03:07:13,232 | INFO     | ***************************************
[2025-06-06 23:07:31] 2025-06-07 03:07:13,735 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-06 23:07:31] 2025-06-07 03:07:13,751 | INFO     | sufficient remaining disk space (29426188288 B)
[2025-06-06 23:07:31] 2025-06-07 03:07:13,751 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 23:07:31] 2025-06-07 03:07:13,752 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 23:07:31] 2025-06-07 03:07:13,752 | INFO     | update_server=False
[2025-06-06 23:07:31] 2025-06-07 03:07:13,752 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 23:07:31] 2025-06-07 03:07:13,752 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 23:07:31] 2025-06-07 03:07:13,753 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 23:07:31] 2025-06-07 03:07:13,753 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 23:07:31] 2025-06-07 03:07:13,753 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 23:07:31] 2025-06-07 03:07:13,785 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 23:07:31] 2025-06-07 03:07:13,906 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-06 23:07:31] 2025-06-07 03:07:13,906 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-06 23:07:31] 2025-06-07 03:07:13,915 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 23:07:31] 2025-06-07 03:07:13,915 | INFO     | will abort loop
[2025-06-06 23:07:31] 2025-06-07 03:07:13,989 | INFO     | all payload control threads have been joined
[2025-06-06 23:07:31] 2025-06-07 03:07:14,208 | INFO     | all job control threads have been joined
[2025-06-06 23:07:31] 2025-06-07 03:07:14,456 | INFO     | all data control threads have been joined
[2025-06-06 23:07:31] 2025-06-07 03:07:14,757 | INFO     | [job] retrieve thread has finished
[2025-06-06 23:07:31] 2025-06-07 03:07:14,839 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 23:07:31] 2025-06-07 03:07:14,853 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 23:07:31] 2025-06-07 03:07:14,921 | INFO     | [job] job monitor thread has finished
[2025-06-06 23:07:31] 2025-06-07 03:07:14,995 | INFO     | [payload] control thread has finished
[2025-06-06 23:07:31] 2025-06-07 03:07:15,213 | INFO     | [job] control thread has finished
[2025-06-06 23:07:31] 2025-06-07 03:07:15,385 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 23:07:31] 2025-06-07 03:07:15,439 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 23:07:31] 2025-06-07 03:07:15,448 | INFO     | [data] copytool_in thread has finished
[2025-06-06 23:07:31] 2025-06-07 03:07:15,461 | INFO     | [data] control thread has finished
[2025-06-06 23:07:31] 2025-06-07 03:07:15,663 | INFO     | [payload] failed_post thread has finished
[2025-06-06 23:07:31] 2025-06-07 03:07:15,790 | INFO     | [data] copytool_out thread has finished
[2025-06-06 23:07:31] 2025-06-07 03:07:15,980 | INFO     | [job] validate thread has finished
[2025-06-06 23:07:31] 2025-06-07 03:07:16,269 | INFO     | [payload] validate_post thread has finished
[2025-06-06 23:07:31] 2025-06-07 03:07:16,559 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 23:07:31] 2025-06-07 03:07:17,564 | INFO     | [job] queue monitor thread has finished
[2025-06-06 23:07:31] 2025-06-07 03:07:19,445 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 23:07:31] 2025-06-07 03:07:24,096 | INFO     | job.realtimelogging is not enabled
[2025-06-06 23:07:31] 2025-06-07 03:07:25,101 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 23:07:31] 2025-06-07 03:07:26,024 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140303183333184)>', '<ExcThread(monitor, started 140302580950784)>']
[2025-06-06 23:07:31] 2025-06-07 03:07:26,811 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 23:07:31] 2025-06-07 03:07:26,812 | INFO     | [monitor] control thread has ended
[2025-06-06 23:07:31] 2025-06-07 03:07:31,050 | INFO     | all workflow threads have been joined
[2025-06-06 23:07:31] 2025-06-07 03:07:31,050 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 23:07:31] 2025-06-07 03:07:31,067 | INFO     | traces error code: 0
[2025-06-06 23:07:31] 2025-06-07 03:07:31,067 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 23:07:31] 2025-06-07 03:07:31,161 [wrapper] ==== pilot stdout END ====
[2025-06-06 23:07:31] 2025-06-07 03:07:31,165 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 23:07:31] 2025-06-07 03:07:31,169 [wrapper] pilotpid: 26453
[2025-06-06 23:07:31] 2025-06-07 03:07:31,173 [wrapper] Pilot exit status: 0
[2025-06-06 23:07:31] 2025-06-07 03:07:31,188 [wrapper] pandaids: 6682897633
[2025-06-06 23:07:31] 2025-06-07 03:07:31,226 [wrapper] cleanup supervisor_pilot  5722 26454
[2025-06-06 23:07:31] 2025-06-07 03:07:31,230 [wrapper] Test setup, not cleaning
[2025-06-06 23:07:31] 2025-06-07 03:07:31,234 [wrapper] apfmon messages muted
[2025-06-06 23:07:31] 2025-06-07 03:07:31,238 [wrapper] ==== wrapper stdout END ====
[2025-06-06 23:07:31] 2025-06-07 03:07:31,242 [wrapper] ==== wrapper stderr END ====
[2025-06-06 23:07:31]  *** Error codes and diagnostics ***
[2025-06-06 23:07:31]     "exeErrorCode": 0,
[2025-06-06 23:07:31]     "exeErrorDiag": "",
[2025-06-06 23:07:31]     "pilotErrorCode": 0,
[2025-06-06 23:07:31]     "pilotErrorDiag": "",
[2025-06-06 23:07:31]  *** Listing of results directory ***
[2025-06-06 23:07:31] total 384432
[2025-06-06 23:07:31] -rwx------ 1 boincer umatlas     37140 Jun  6 22:03 runpilot2-wrapper.sh
[2025-06-06 23:07:31] -rw-r--r-- 1 boincer umatlas      5112 Jun  6 22:03 queuedata.json
[2025-06-06 23:07:31] -rw-r--r-- 1 boincer umatlas    529402 Jun  6 22:03 pilot3.tar.gz
[2025-06-06 23:07:31] -rw-r--r-- 1 boincer umatlas       100 Jun  6 22:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 23:07:31] -rwxr-xr-x 1 boincer umatlas      7986 Jun  6 22:04 run_atlas
[2025-06-06 23:07:31] -rw-r--r-- 1 boincer umatlas       105 Jun  6 22:04 job.xml
[2025-06-06 23:07:31] -rw-r--r-- 2 boincer umatlas 214369100 Jun  6 22:04 EVNT.45006593._000772.pool.root.1
[2025-06-06 23:07:31] -rw-r--r-- 2 boincer umatlas     15095 Jun  6 22:04 start_atlas.sh
[2025-06-06 23:07:31] drwxrwx--x 2 boincer umatlas      4096 Jun  6 22:04 shared
[2025-06-06 23:07:31] -rw-r--r-- 2 boincer umatlas    541900 Jun  6 22:04 input.tar.gz
[2025-06-06 23:07:31] -rw-r--r-- 1 boincer umatlas         0 Jun  6 22:04 boinc_lockfile
[2025-06-06 23:07:31] -rw-r--r-- 1 boincer umatlas      2523 Jun  6 22:04 pandaJob.out
[2025-06-06 23:07:31] -rw------- 1 boincer umatlas    985748 Jun  6 22:04 agis_schedconf.cvmfs.json
[2025-06-06 23:07:31] -rw------- 1 boincer umatlas   1598969 Jun  6 22:04 agis_ddmendpoints.agis.ALL.json
[2025-06-06 23:07:31] drwx------ 4 boincer umatlas      4096 Jun  6 22:04 pilot3
[2025-06-06 23:07:31] -rw-r--r-- 1 boincer umatlas      5867 Jun  6 23:03 init_data.xml
[2025-06-06 23:07:31] -rw------- 1 boincer umatlas        95 Jun  6 23:06 pilot_heartbeat.json
[2025-06-06 23:07:31] -rw------- 1 boincer umatlas 173912364 Jun  6 23:06 HITS.45006595._057181.pool.root.1
[2025-06-06 23:07:31] -rw-r--r-- 1 boincer umatlas       529 Jun  6 23:06 boinc_task_state.xml
[2025-06-06 23:07:31] -rw------- 1 boincer umatlas      1043 Jun  6 23:06 memory_monitor_summary.json
[2025-06-06 23:07:31] -rw------- 1 boincer umatlas    370129 Jun  6 23:07 log.45006595._057181.job.log.tgz.1
[2025-06-06 23:07:31] -rw------- 1 boincer umatlas      7767 Jun  6 23:07 heartbeat.json
[2025-06-06 23:07:31] -rw-r--r-- 1 boincer umatlas      8192 Jun  6 23:07 boinc_mmap_file
[2025-06-06 23:07:31] -rw-r--r-- 1 boincer umatlas        27 Jun  6 23:07 wrapper_checkpoint.txt
[2025-06-06 23:07:31] -rw------- 1 boincer umatlas      4738 Jun  6 23:07 pilotlog.txt
[2025-06-06 23:07:31] -rw------- 1 boincer umatlas    371862 Jun  6 23:07 log.45006595._057181.job.log.1
[2025-06-06 23:07:31] -rw------- 1 boincer umatlas       357 Jun  6 23:07 output.list
[2025-06-06 23:07:31] -rw-r--r-- 1 boincer umatlas       620 Jun  6 23:07 runtime_log
[2025-06-06 23:07:31] -rw------- 1 boincer umatlas    757760 Jun  6 23:07 result.tar.gz
[2025-06-06 23:07:31] -rw-r--r-- 1 boincer umatlas      8657 Jun  6 23:07 runtime_log.err
[2025-06-06 23:07:31] -rw------- 1 boincer umatlas       659 Jun  6 23:07 KveLDmd5xh7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmj7nKDmPYQ2Om.diag
[2025-06-06 23:07:31] -rw-r--r-- 1 boincer umatlas     21777 Jun  6 23:07 stderr.txt
[2025-06-06 23:07:31] HITS file was successfully produced:
[2025-06-06 23:07:31] -rw------- 1 boincer umatlas 173912364 Jun  6 23:06 shared/HITS.pool.root.1
[2025-06-06 23:07:31]  *** Contents of shared directory: ***
[2025-06-06 23:07:31] total 380480
[2025-06-06 23:07:31] -rw-r--r-- 2 boincer umatlas 214369100 Jun  6 22:04 ATLAS.root_0
[2025-06-06 23:07:31] -rw-r--r-- 2 boincer umatlas     15095 Jun  6 22:04 start_atlas.sh
[2025-06-06 23:07:31] -rw-r--r-- 2 boincer umatlas    541900 Jun  6 22:04 input.tar.gz
[2025-06-06 23:07:31] -rw------- 1 boincer umatlas 173912364 Jun  6 23:06 HITS.pool.root.1
[2025-06-06 23:07:31] -rw------- 1 boincer umatlas    757760 Jun  6 23:07 result.tar.gz
23:07:32 (22776): run_atlas exited; CPU time 40494.693760
23:07:32 (22776): called boinc_finish(0)

</stderr_txt>
]]>

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