Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:40:39 (3461768): wrapper (7.7.26015): starting
21:40:39 (3461768): wrapper: running run_atlas (--nthreads 8)
[2025-06-06 21:40:39] Arguments: --nthreads 8
[2025-06-06 21:40:39] Threads: 8
[2025-06-06 21:40:39] Checking for CVMFS
[2025-06-06 21:40:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 21:40:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 21:40:40] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 21:40:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 21:40:40] 2.12.6.0 851069 36472 470968 146881 1 336 39941373 40960001 13121 16776704 1 167651014 99.661 152554287 24668 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-06 21:40:40] CVMFS is ok
[2025-06-06 21:40:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 21:40:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 21:40:40] Further information can be found at the LHC@home message board.
[2025-06-06 21:40:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 21:40:40] Checking for apptainer binary...
[2025-06-06 21:40:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 21:40:40] Running /usr/bin/apptainer --version
[2025-06-06 21:40:40] apptainer version 1.4.1-1.el9
[2025-06-06 21:40:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 21:40:40] c7-11-11.aglt2.org
[2025-06-06 21:40:40] apptainer works
[2025-06-06 21:40:40] Set ATHENA_PROC_NUMBER=8
[2025-06-06 21:40:40] Set ATHENA_CORE_NUMBER=8
[2025-06-06 21:40:40] Starting ATLAS job with PandaID=6671697107
[2025-06-06 21:40:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 23:06:33]  *** The last 200 lines of the pilot log: ***
[2025-06-06 23:06:34]  is_altstaged=None
[2025-06-06 23:06:34]  is_tar=False
[2025-06-06 23:06:34]  lfn=log.44871837._100518.job.log.tgz.1
[2025-06-06 23:06:34]  mtime=0
[2025-06-06 23:06:34]  protocol_id=None
[2025-06-06 23:06:34]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 23:06:34]  replicas=None
[2025-06-06 23:06:34]  scope=mc23_13p6TeV
[2025-06-06 23:06:34]  status=None
[2025-06-06 23:06:34]  status_code=0
[2025-06-06 23:06:34]  storage_token=
[2025-06-06 23:06:34]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6671697107/log.44871837._100518.job.log.tgz.1
[2025-06-06 23:06:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/07/1c/log.44871837._100518.job.log.tgz.1
[2025-06-06 23:06:34]  workdir=None
[2025-06-06 23:06:34] ]
[2025-06-06 23:06:34] 2025-06-07 03:06:07,237 | INFO     | transferring file log.44871837._100518.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6671697107/log.44871837._100518.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-06 23:06:34] 2025-06-07 03:06:07,237 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6671697107/log.44871837._100518.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._100518.job
[2025-06-06 23:06:34] 2025-06-07 03:06:07,260 | INFO     | adding to output.list: log.44871837._100518.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/07/1c/log.44871837._100518.job.log.tg
[2025-06-06 23:06:34] 2025-06-07 03:06:07,261 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 23:06:34] 2025-06-07 03:06:07,261 | INFO     | summary of transferred files:
[2025-06-06 23:06:34] 2025-06-07 03:06:07,261 | INFO     |  -- lfn=log.44871837._100518.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 23:06:34] 2025-06-07 03:06:07,261 | INFO     | stage-out finished correctly
[2025-06-06 23:06:34] 2025-06-07 03:06:07,964 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 23:06:34] 2025-06-07 03:06:08,371 | INFO     | job 6671697107 has state=finished
[2025-06-06 23:06:34] 2025-06-07 03:06:08,371 | INFO     | preparing for final server update for job 6671697107 in state='finished'
[2025-06-06 23:06:34] 2025-06-07 03:06:08,372 | INFO     | this job has now completed (state=finished)
[2025-06-06 23:06:34] 2025-06-07 03:06:08,372 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 23:06:34] 2025-06-07 03:06:08,372 | INFO     | log transfer has been attempted: DONE
[2025-06-06 23:06:34] 2025-06-07 03:06:08,372 | INFO     | job 6671697107 has finished - writing final server update
[2025-06-06 23:06:34] 2025-06-07 03:06:08,372 | INFO     | total number of processed events: 400 (read)
[2025-06-06 23:06:34] 2025-06-07 03:06:08,390 | INFO     | executing command: lscpu
[2025-06-06 23:06:34] 2025-06-07 03:06:08,463 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 23:06:34] 2025-06-07 03:06:09,873 | WARNING  | process 3472906 can no longer be monitored (due to stat problems) - aborting
[2025-06-06 23:06:34] 2025-06-07 03:06:09,873 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6671697107/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 23:06:34] 2025-06-07 03:06:10,144 | INFO     | number of running child processes to parent process 3472906: 1
[2025-06-06 23:06:34] 2025-06-07 03:06:10,144 | INFO     | maximum number of monitored processes: 6
[2025-06-06 23:06:34] 2025-06-07 03:06:10,875 | INFO     | PID=3465929 has CPU usage=11.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-06 23:06:34] 2025-06-07 03:06:10,876 | INFO     | .. there are 16 such processes running
[2025-06-06 23:06:34] 2025-06-07 03:06:12,108 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 23:06:34] 2025-06-07 03:06:12,109 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6671697107/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 23:06:34] 2025-06-07 03:06:12,109 | INFO     | extracted standard info from prmon json
[2025-06-06 23:06:34] 2025-06-07 03:06:12,109 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 23:06:34] 2025-06-07 03:06:12,109 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 23:06:34] 2025-06-07 03:06:12,110 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 23:06:34] 2025-06-07 03:06:12,110 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 23:06:34] 2025-06-07 03:06:12,111 | INFO     | fitting pss+swap vs Time
[2025-06-06 23:06:34] 2025-06-07 03:06:12,111 | INFO     | sum of square deviations: 141539398.0
[2025-06-06 23:06:34] 2025-06-07 03:06:12,112 | INFO     | sum of deviations: -12012068272.0
[2025-06-06 23:06:34] 2025-06-07 03:06:12,112 | INFO     | mean x: 1749263102.0
[2025-06-06 23:06:34] 2025-06-07 03:06:12,112 | INFO     | mean y: 2314112.4025974027
[2025-06-06 23:06:34] 2025-06-07 03:06:12,112 | INFO     | -- intersect: 148457571827.3923
[2025-06-06 23:06:34] 2025-06-07 03:06:12,112 | INFO     | intersect: 148457571827.3923
[2025-06-06 23:06:34] 2025-06-07 03:06:12,112 | INFO     | chi2: 0.2139664729946914
[2025-06-06 23:06:34] 2025-06-07 03:06:12,112 | INFO     | -- intersect: 148457571827.3923
[2025-06-06 23:06:34] 2025-06-07 03:06:12,112 | INFO     | current memory leak: -84.87 B/s (using 77 data points, chi2=0.21)
[2025-06-06 23:06:34] 2025-06-07 03:06:12,113 | INFO     | ..............................
[2025-06-06 23:06:34] 2025-06-07 03:06:12,113 | INFO     | . Timing measurements:
[2025-06-06 23:06:34] 2025-06-07 03:06:12,113 | INFO     | . get job = 0 s
[2025-06-06 23:06:34] 2025-06-07 03:06:12,113 | INFO     | . initial setup = 2 s
[2025-06-06 23:06:34] 2025-06-07 03:06:12,113 | INFO     | . payload setup = 7 s
[2025-06-06 23:06:34] 2025-06-07 03:06:12,113 | INFO     | . stage-in = 0 s
[2025-06-06 23:06:34] 2025-06-07 03:06:12,113 | INFO     | . payload execution = 5088 s
[2025-06-06 23:06:34] 2025-06-07 03:06:12,113 | INFO     | . stage-out = 0 s
[2025-06-06 23:06:34] 2025-06-07 03:06:12,113 | INFO     | . log creation = 0 s
[2025-06-06 23:06:34] 2025-06-07 03:06:12,113 | INFO     | ..............................
[2025-06-06 23:06:34] 2025-06-07 03:06:12,647 | INFO     | 
[2025-06-06 23:06:34] 2025-06-07 03:06:12,648 | INFO     | job summary report
[2025-06-06 23:06:34] 2025-06-07 03:06:12,648 | INFO     | --------------------------------------------------
[2025-06-06 23:06:34] 2025-06-07 03:06:12,648 | INFO     | PanDA job id: 6671697107
[2025-06-06 23:06:34] 2025-06-07 03:06:12,648 | INFO     | task id: 44871837
[2025-06-06 23:06:34] 2025-06-07 03:06:12,648 | INFO     | errors: (none)
[2025-06-06 23:06:34] 2025-06-07 03:06:12,648 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 23:06:34] 2025-06-07 03:06:12,648 | INFO     | pilot state: finished 
[2025-06-06 23:06:34] 2025-06-07 03:06:12,648 | INFO     | transexitcode: 0
[2025-06-06 23:06:34] 2025-06-07 03:06:12,648 | INFO     | exeerrorcode: 0
[2025-06-06 23:06:34] 2025-06-07 03:06:12,648 | INFO     | exeerrordiag: 
[2025-06-06 23:06:34] 2025-06-07 03:06:12,648 | INFO     | exitcode: 0
[2025-06-06 23:06:34] 2025-06-07 03:06:12,648 | INFO     | exitmsg: OK
[2025-06-06 23:06:34] 2025-06-07 03:06:12,649 | INFO     | cpuconsumptiontime: 37092 s
[2025-06-06 23:06:34] 2025-06-07 03:06:12,649 | INFO     | nevents: 400
[2025-06-06 23:06:34] 2025-06-07 03:06:12,649 | INFO     | neventsw: 0
[2025-06-06 23:06:34] 2025-06-07 03:06:12,649 | INFO     | pid: 3472906
[2025-06-06 23:06:34] 2025-06-07 03:06:12,649 | INFO     | pgrp: 3472906
[2025-06-06 23:06:34] 2025-06-07 03:06:12,649 | INFO     | corecount: 8
[2025-06-06 23:06:34] 2025-06-07 03:06:12,649 | INFO     | event service: False
[2025-06-06 23:06:34] 2025-06-07 03:06:12,649 | INFO     | sizes: {0: 2397289, 4: 2397495, 11: 2397523, 5099: 2423868, 5101: 2432809, 5102: 2432865, 5106: 2433163}
[2025-06-06 23:06:34] 2025-06-07 03:06:12,649 | INFO     | --------------------------------------------------
[2025-06-06 23:06:34] 2025-06-07 03:06:12,649 | INFO     | 
[2025-06-06 23:06:34] 2025-06-07 03:06:12,649 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-06 23:06:34] 2025-06-07 03:06:12,672 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 23:06:34] 2025-06-07 03:06:12,673 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 23:06:34] 2025-06-07 03:06:12,673 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 23:06:34] 2025-06-07 03:06:12,673 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 23:06:34] 2025-06-07 03:06:12,673 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 23:06:34] 2025-06-07 03:06:12,673 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 23:06:34] 2025-06-07 03:06:12,673 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 23:06:34] 2025-06-07 03:06:12,673 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 23:06:34] 2025-06-07 03:06:12,673 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 23:06:34] 2025-06-07 03:06:12,673 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 23:06:34] 2025-06-07 03:06:12,673 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 23:06:34] 2025-06-07 03:06:12,673 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 23:06:34] 2025-06-07 03:06:12,674 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 23:06:34] 2025-06-07 03:06:12,674 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 23:06:34] 2025-06-07 03:06:12,674 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 23:06:34] 2025-06-07 03:06:12,674 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 23:06:34] 2025-06-07 03:06:12,674 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 23:06:34] 2025-06-07 03:06:12,674 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 23:06:34] 2025-06-07 03:06:12,674 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 23:06:34] 2025-06-07 03:06:12,674 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 23:06:34] 2025-06-07 03:06:12,674 | INFO     | job 6671697107 has completed (purged errors)
[2025-06-06 23:06:34] 2025-06-07 03:06:12,674 | INFO     | overall cleanup function is called
[2025-06-06 23:06:34] 2025-06-07 03:06:13,682 | INFO     | --- collectZombieJob: --- 10, [3472906]
[2025-06-06 23:06:34] 2025-06-07 03:06:13,682 | INFO     | zombie collector waiting for pid 3472906
[2025-06-06 23:06:34] 2025-06-07 03:06:13,683 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 23:06:34] 2025-06-07 03:06:13,683 | INFO     | collected zombie processes
[2025-06-06 23:06:34] 2025-06-07 03:06:13,683 | INFO     | will attempt to kill all subprocesses of pid=3472906
[2025-06-06 23:06:34] 2025-06-07 03:06:13,970 | INFO     | process IDs to be killed: [3472906] (in reverse order)
[2025-06-06 23:06:34] 2025-06-07 03:06:14,078 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 23:06:34] 2025-06-07 03:06:14,078 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 23:06:34] 2025-06-07 03:06:14,092 | INFO     | did not find any defunct processes belonging to 3472906
[2025-06-06 23:06:34] 2025-06-07 03:06:14,103 | INFO     | did not find any defunct processes belonging to 3472906
[2025-06-06 23:06:34] 2025-06-07 03:06:14,104 | INFO     | ready for new job
[2025-06-06 23:06:34] 2025-06-07 03:06:14,104 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 23:06:34] 2025-06-07 03:06:14,107 | INFO     | **************************************
[2025-06-06 23:06:34] 2025-06-07 03:06:14,107 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 23:06:34] 2025-06-07 03:06:14,107 | INFO     | **************************************
[2025-06-06 23:06:34] 2025-06-07 03:06:14,107 | INFO     | 
[2025-06-06 23:06:34] 2025-06-07 03:06:14,123 | INFO     | architecture information:
[2025-06-06 23:06:34] 2025-06-07 03:06:14,123 | INFO     | executing command: cat /etc/os-release
[2025-06-06 23:06:34] 2025-06-07 03:06:14,138 | INFO     | cat /etc/os-release:
[2025-06-06 23:06:34] NAME="CentOS Linux"
[2025-06-06 23:06:34] VERSION="7 (Core)"
[2025-06-06 23:06:34] ID="centos"
[2025-06-06 23:06:34] ID_LIKE="rhel fedora"
[2025-06-06 23:06:34] VERSION_ID="7"
[2025-06-06 23:06:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 23:06:34] ANSI_COLOR="0;31"
[2025-06-06 23:06:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 23:06:34] HOME_URL="https://www.centos.org/"
[2025-06-06 23:06:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 23:06:34] 
[2025-06-06 23:06:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 23:06:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 23:06:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 23:06:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 23:06:34] 
[2025-06-06 23:06:34] 2025-06-07 03:06:14,138 | INFO     | **************************************
[2025-06-06 23:06:34] 2025-06-07 03:06:14,641 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-06 23:06:34] 2025-06-07 03:06:14,652 | INFO     | sufficient remaining disk space (86497034240 B)
[2025-06-06 23:06:34] 2025-06-07 03:06:14,653 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 23:06:34] 2025-06-07 03:06:14,653 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 23:06:34] 2025-06-07 03:06:14,653 | INFO     | update_server=False
[2025-06-06 23:06:34] 2025-06-07 03:06:14,653 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 23:06:34] 2025-06-07 03:06:14,653 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 23:06:34] 2025-06-07 03:06:14,884 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 23:06:34] 2025-06-07 03:06:14,885 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 23:06:34] 2025-06-07 03:06:14,885 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 23:06:34] 2025-06-07 03:06:15,149 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-06 23:06:34] 2025-06-07 03:06:15,150 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-06 23:06:34] 2025-06-07 03:06:15,150 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 23:06:34] 2025-06-07 03:06:15,150 | INFO     | will abort loop
[2025-06-06 23:06:34] 2025-06-07 03:06:15,348 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 23:06:34] 2025-06-07 03:06:15,375 | INFO     | all job control threads have been joined
[2025-06-06 23:06:34] 2025-06-07 03:06:15,569 | INFO     | all payload control threads have been joined
[2025-06-06 23:06:34] 2025-06-07 03:06:15,657 | INFO     | [job] retrieve thread has finished
[2025-06-06 23:06:34] 2025-06-07 03:06:15,668 | INFO     | all data control threads have been joined
[2025-06-06 23:06:34] 2025-06-07 03:06:16,050 | INFO     | [payload] validate_post thread has finished
[2025-06-06 23:06:34] 2025-06-07 03:06:16,150 | INFO     | [job] job monitor thread has finished
[2025-06-06 23:06:34] 2025-06-07 03:06:16,382 | INFO     | [job] control thread has finished
[2025-06-06 23:06:34] 2025-06-07 03:06:16,465 | INFO     | [job] validate thread has finished
[2025-06-06 23:06:34] 2025-06-07 03:06:16,572 | INFO     | [payload] control thread has finished
[2025-06-06 23:06:34] 2025-06-07 03:06:16,673 | INFO     | [data] control thread has finished
[2025-06-06 23:06:34] 2025-06-07 03:06:16,703 | INFO     | [data] copytool_in thread has finished
[2025-06-06 23:06:34] 2025-06-07 03:06:16,738 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 23:06:34] 2025-06-07 03:06:16,888 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 23:06:34] 2025-06-07 03:06:16,972 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 23:06:34] 2025-06-07 03:06:17,094 | INFO     | [payload] failed_post thread has finished
[2025-06-06 23:06:34] 2025-06-07 03:06:17,198 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 23:06:34] 2025-06-07 03:06:17,354 | INFO     | [data] copytool_out thread has finished
[2025-06-06 23:06:34] 2025-06-07 03:06:18,203 | INFO     | [job] queue monitor thread has finished
[2025-06-06 23:06:34] 2025-06-07 03:06:18,660 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 23:06:34] 2025-06-07 03:06:25,643 | INFO     | job.realtimelogging is not enabled
[2025-06-06 23:06:34] 2025-06-07 03:06:26,648 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 23:06:34] 2025-06-07 03:06:28,618 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139651993397056)>', '<ExcThread(monitor, started 139651507537664)>']
[2025-06-06 23:06:34] 2025-06-07 03:06:28,934 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 23:06:34] 2025-06-07 03:06:28,935 | INFO     | [monitor] control thread has ended
[2025-06-06 23:06:34] 2025-06-07 03:06:33,644 | INFO     | all workflow threads have been joined
[2025-06-06 23:06:34] 2025-06-07 03:06:33,644 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 23:06:34] 2025-06-07 03:06:33,644 | INFO     | traces error code: 0
[2025-06-06 23:06:34] 2025-06-07 03:06:33,644 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 23:06:34] 2025-06-07 03:06:33,812 [wrapper] ==== pilot stdout END ====
[2025-06-06 23:06:34] 2025-06-07 03:06:33,816 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 23:06:34] 2025-06-07 03:06:33,819 [wrapper] pilotpid: 3465929
[2025-06-06 23:06:34] 2025-06-07 03:06:33,822 [wrapper] Pilot exit status: 0
[2025-06-06 23:06:34] 2025-06-07 03:06:33,835 [wrapper] pandaids: 6671697107
[2025-06-06 23:06:34] 2025-06-07 03:06:33,912 [wrapper] cleanup supervisor_pilot 3604037 3465930
[2025-06-06 23:06:34] 2025-06-07 03:06:33,915 [wrapper] Test setup, not cleaning
[2025-06-06 23:06:34] 2025-06-07 03:06:33,919 [wrapper] apfmon messages muted
[2025-06-06 23:06:34] 2025-06-07 03:06:33,922 [wrapper] ==== wrapper stdout END ====
[2025-06-06 23:06:34] 2025-06-07 03:06:33,925 [wrapper] ==== wrapper stderr END ====
[2025-06-06 23:06:34]  *** Error codes and diagnostics ***
[2025-06-06 23:06:34]     "exeErrorCode": 0,
[2025-06-06 23:06:34]     "exeErrorDiag": "",
[2025-06-06 23:06:34]     "pilotErrorCode": 0,
[2025-06-06 23:06:34]     "pilotErrorDiag": "",
[2025-06-06 23:06:34]  *** Listing of results directory ***
[2025-06-06 23:06:34] total 412356
[2025-06-06 23:06:34] -rw-r--r--. 1 boincer umatlas    495897 May 29 08:27 pilot3.tar.gz
[2025-06-06 23:06:34] -rwx------. 1 boincer umatlas     37140 May 29 09:07 runpilot2-wrapper.sh
[2025-06-06 23:06:34] -rw-r--r--. 1 boincer umatlas      5111 May 29 09:07 queuedata.json
[2025-06-06 23:06:34] -rw-r--r--. 1 boincer umatlas       100 Jun  6 21:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 23:06:34] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  6 21:40 run_atlas
[2025-06-06 23:06:34] -rw-r--r--. 1 boincer umatlas       105 Jun  6 21:40 job.xml
[2025-06-06 23:06:34] -rw-r--r--. 2 boincer umatlas 224032346 Jun  6 21:40 EVNT.44871834._003167.pool.root.1
[2025-06-06 23:06:34] drwxrwx--x. 2 boincer umatlas      4096 Jun  6 21:40 shared
[2025-06-06 23:06:34] -rw-r--r--. 2 boincer umatlas    508873 Jun  6 21:40 input.tar.gz
[2025-06-06 23:06:34] -rw-r--r--. 2 boincer umatlas     15093 Jun  6 21:40 start_atlas.sh
[2025-06-06 23:06:34] -rw-r--r--. 1 boincer umatlas         0 Jun  6 21:40 boinc_lockfile
[2025-06-06 23:06:34] -rw-r--r--. 1 boincer umatlas      2557 Jun  6 21:40 pandaJob.out
[2025-06-06 23:06:34] -rw-------. 1 boincer umatlas    985748 Jun  6 21:40 agis_schedconf.cvmfs.json
[2025-06-06 23:06:34] -rw-------. 1 boincer umatlas   1598969 Jun  6 21:40 agis_ddmendpoints.agis.ALL.json
[2025-06-06 23:06:34] drwx------. 4 boincer umatlas      4096 Jun  6 21:40 pilot3
[2025-06-06 23:06:34] -rw-r--r--. 1 boincer umatlas      6897 Jun  6 23:01 init_data.xml
[2025-06-06 23:06:34] -rw-------. 1 boincer umatlas        95 Jun  6 23:05 pilot_heartbeat.json
[2025-06-06 23:06:34] -rw-r--r--. 1 boincer umatlas       529 Jun  6 23:05 boinc_task_state.xml
[2025-06-06 23:06:34] -rw-------. 1 boincer umatlas 192786773 Jun  6 23:05 HITS.44871837._100518.pool.root.1
[2025-06-06 23:06:34] -rw-------. 1 boincer umatlas      1027 Jun  6 23:06 memory_monitor_summary.json
[2025-06-06 23:06:34] -rw-------. 1 boincer umatlas    297228 Jun  6 23:06 log.44871837._100518.job.log.tgz.1
[2025-06-06 23:06:34] -rw-r--r--. 1 boincer umatlas      8192 Jun  6 23:06 boinc_mmap_file
[2025-06-06 23:06:34] -rw-r--r--. 1 boincer umatlas        27 Jun  6 23:06 wrapper_checkpoint.txt
[2025-06-06 23:06:34] -rw-------. 1 boincer umatlas      7686 Jun  6 23:06 heartbeat.json
[2025-06-06 23:06:34] -rw-------. 1 boincer umatlas      4611 Jun  6 23:06 pilotlog.txt
[2025-06-06 23:06:34] -rw-------. 1 boincer umatlas    502294 Jun  6 23:06 log.44871837._100518.job.log.1
[2025-06-06 23:06:34] -rw-------. 1 boincer umatlas       357 Jun  6 23:06 output.list
[2025-06-06 23:06:34] -rw-r--r--. 1 boincer umatlas       620 Jun  6 23:06 runtime_log
[2025-06-06 23:06:34] -rw-------. 1 boincer umatlas    819200 Jun  6 23:06 result.tar.gz
[2025-06-06 23:06:34] -rw-r--r--. 1 boincer umatlas      8659 Jun  6 23:06 runtime_log.err
[2025-06-06 23:06:34] -rw-------. 1 boincer umatlas       652 Jun  6 23:06 oFtKDmJAse7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrbeKDm2GIfQo.diag
[2025-06-06 23:06:34] -rw-r--r--. 1 boincer umatlas     21441 Jun  6 23:06 stderr.txt
[2025-06-06 23:06:34] HITS file was successfully produced:
[2025-06-06 23:06:34] -rw-------. 1 boincer umatlas 192786773 Jun  6 23:05 shared/HITS.pool.root.1
[2025-06-06 23:06:34]  *** Contents of shared directory: ***
[2025-06-06 23:06:34] total 408380
[2025-06-06 23:06:34] -rw-r--r--. 2 boincer umatlas 224032346 Jun  6 21:40 ATLAS.root_0
[2025-06-06 23:06:34] -rw-r--r--. 2 boincer umatlas    508873 Jun  6 21:40 input.tar.gz
[2025-06-06 23:06:34] -rw-r--r--. 2 boincer umatlas     15093 Jun  6 21:40 start_atlas.sh
[2025-06-06 23:06:34] -rw-------. 1 boincer umatlas 192786773 Jun  6 23:05 HITS.pool.root.1
[2025-06-06 23:06:34] -rw-------. 1 boincer umatlas    819200 Jun  6 23:06 result.tar.gz
23:06:35 (3461768): run_atlas exited; CPU time 37127.427399
23:06:35 (3461768): called boinc_finish(0)

</stderr_txt>
]]>

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