Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:44:12 (6471): wrapper (7.7.26015): starting
20:44:12 (6471): wrapper: running run_atlas (--nthreads 8)
[2025-06-06 20:44:12] Arguments: --nthreads 8
[2025-06-06 20:44:12] Threads: 8
[2025-06-06 20:44:12] Checking for CVMFS
[2025-06-06 20:44:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 20:44:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 20:44:12] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 20:44:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 20:44:12] 2.11.2.0 2893 39251 77760 146880 1 1 10982844 20275200 1 130560 0 12670556 99.977 6972620 8409 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-06 20:44:12] CVMFS is ok
[2025-06-06 20:44:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 20:44:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 20:44:12] Further information can be found at the LHC@home message board.
[2025-06-06 20:44:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 20:44:12] Checking for apptainer binary...
[2025-06-06 20:44:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 20:44:12] Running /usr/bin/apptainer --version
[2025-06-06 20:44:13] apptainer version 1.3.2-1.el7
[2025-06-06 20:44:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 20:44:14] c-115-6.aglt2.org
[2025-06-06 20:44:14] apptainer works
[2025-06-06 20:44:14] Set ATHENA_PROC_NUMBER=8
[2025-06-06 20:44:14] Set ATHENA_CORE_NUMBER=8
[2025-06-06 20:44:14] Starting ATLAS job with PandaID=6682781069
[2025-06-06 20:44:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 22:26:10]  *** The last 200 lines of the pilot log: ***
[2025-06-06 22:26:10]  mtime=0
[2025-06-06 22:26:10]  protocol_id=None
[2025-06-06 22:26:10]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 22:26:10]  replicas=None
[2025-06-06 22:26:10]  scope=mc23_13p6TeV
[2025-06-06 22:26:10]  status=None
[2025-06-06 22:26:10]  status_code=0
[2025-06-06 22:26:10]  storage_token=
[2025-06-06 22:26:10]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6682781069/log.45006595._057180.job.log.tgz.1
[2025-06-06 22:26:10]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b0/53/log.45006595._057180.job.log.tgz.1
[2025-06-06 22:26:10]  workdir=None
[2025-06-06 22:26:10] ]
[2025-06-06 22:26:10] 2025-06-07 02:25:31,539 | INFO     | transferring file log.45006595._057180.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6682781069/log.45006595._057180.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-06 22:26:10] 2025-06-07 02:25:31,539 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6682781069/log.45006595._057180.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._057180.job
[2025-06-06 22:26:10] 2025-06-07 02:25:31,565 | INFO     | adding to output.list: log.45006595._057180.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b0/53/log.45006595._057180.job.log.tg
[2025-06-06 22:26:10] 2025-06-07 02:25:31,566 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 22:26:10] 2025-06-07 02:25:31,566 | INFO     | summary of transferred files:
[2025-06-06 22:26:10] 2025-06-07 02:25:31,566 | INFO     |  -- lfn=log.45006595._057180.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 22:26:10] 2025-06-07 02:25:31,567 | INFO     | stage-out finished correctly
[2025-06-06 22:26:10] 2025-06-07 02:25:31,928 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 22:26:10] 2025-06-07 02:25:32,011 | INFO     | job 6682781069 has state=finished
[2025-06-06 22:26:10] 2025-06-07 02:25:32,012 | INFO     | preparing for final server update for job 6682781069 in state='finished'
[2025-06-06 22:26:10] 2025-06-07 02:25:32,012 | INFO     | this job has now completed (state=finished)
[2025-06-06 22:26:10] 2025-06-07 02:25:32,013 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 22:26:10] 2025-06-07 02:25:32,013 | INFO     | log transfer has been attempted: DONE
[2025-06-06 22:26:10] 2025-06-07 02:25:32,013 | INFO     | job 6682781069 has finished - writing final server update
[2025-06-06 22:26:10] 2025-06-07 02:25:32,013 | INFO     | total number of processed events: 400 (read)
[2025-06-06 22:26:10] 2025-06-07 02:25:32,014 | INFO     | executing command: lscpu
[2025-06-06 22:26:10] 2025-06-07 02:25:32,044 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 22:26:10] 2025-06-07 02:25:35,214 | WARNING  | process 16910 can no longer be monitored (due to stat problems) - aborting
[2025-06-06 22:26:10] 2025-06-07 02:25:35,214 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6682781069/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 22:26:10] 2025-06-07 02:25:35,308 | INFO     | number of running child processes to parent process 16910: 1
[2025-06-06 22:26:10] 2025-06-07 02:25:35,308 | INFO     | maximum number of monitored processes: 6
[2025-06-06 22:26:10] 2025-06-07 02:25:35,746 | INFO     | PID=10499 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-06 22:26:10] 2025-06-07 02:25:37,811 | INFO     | monitor loop #449: job 0:6682781069 is in state 'finished'
[2025-06-06 22:26:10] 2025-06-07 02:25:37,811 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 22:26:10] 2025-06-07 02:25:37,851 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-06 22:26:10] 2025-06-07 02:25:37,855 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1729.125
[2025-06-06 22:26:10] 2025-06-07 02:25:37,857 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6682781069/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 22:26:10] 2025-06-07 02:25:37,858 | INFO     | extracted standard info from prmon json
[2025-06-06 22:26:10] 2025-06-07 02:25:37,858 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 22:26:10] 2025-06-07 02:25:37,858 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 22:26:10] 2025-06-07 02:25:37,859 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 22:26:10] 2025-06-07 02:25:37,859 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 22:26:10] 2025-06-07 02:25:37,862 | INFO     | fitting pss+swap vs Time
[2025-06-06 22:26:10] 2025-06-07 02:25:37,862 | INFO     | sum of square deviations: 241429643.0
[2025-06-06 22:26:10] 2025-06-07 02:25:37,863 | INFO     | sum of deviations: -12810358710.5
[2025-06-06 22:26:10] 2025-06-07 02:25:37,863 | INFO     | mean x: 1749260186.5
[2025-06-06 22:26:10] 2025-06-07 02:25:37,863 | INFO     | mean y: 2556968.054347826
[2025-06-06 22:26:10] 2025-06-07 02:25:37,863 | INFO     | -- intersect: 92819040431.35934
[2025-06-06 22:26:10] 2025-06-07 02:25:37,863 | INFO     | intersect: 92819040431.35934
[2025-06-06 22:26:10] 2025-06-07 02:25:37,864 | INFO     | chi2: 0.09218278343375741
[2025-06-06 22:26:10] 2025-06-07 02:25:37,864 | INFO     | -- intersect: 92819040431.35934
[2025-06-06 22:26:10] 2025-06-07 02:25:37,864 | INFO     | current memory leak: -53.06 B/s (using 92 data points, chi2=0.09)
[2025-06-06 22:26:10] 2025-06-07 02:25:37,864 | INFO     | could have reported an average CPU frequency of 2107 MHz (7 samples)
[2025-06-06 22:26:10] 2025-06-07 02:25:37,865 | INFO     | ..............................
[2025-06-06 22:26:10] 2025-06-07 02:25:37,865 | INFO     | . Timing measurements:
[2025-06-06 22:26:10] 2025-06-07 02:25:37,865 | INFO     | . get job = 0 s
[2025-06-06 22:26:10] 2025-06-07 02:25:37,865 | INFO     | . initial setup = 2 s
[2025-06-06 22:26:10] 2025-06-07 02:25:37,865 | INFO     | . payload setup = 11 s
[2025-06-06 22:26:10] 2025-06-07 02:25:37,865 | INFO     | . stage-in = 0 s
[2025-06-06 22:26:10] 2025-06-07 02:25:37,865 | INFO     | . payload execution = 6026 s
[2025-06-06 22:26:10] 2025-06-07 02:25:37,865 | INFO     | . stage-out = 0 s
[2025-06-06 22:26:10] 2025-06-07 02:25:37,865 | INFO     | . log creation = 0 s
[2025-06-06 22:26:10] 2025-06-07 02:25:37,865 | INFO     | ..............................
[2025-06-06 22:26:10] 2025-06-07 02:25:38,412 | INFO     | 
[2025-06-06 22:26:10] 2025-06-07 02:25:38,412 | INFO     | job summary report
[2025-06-06 22:26:10] 2025-06-07 02:25:38,412 | INFO     | --------------------------------------------------
[2025-06-06 22:26:10] 2025-06-07 02:25:38,412 | INFO     | PanDA job id: 6682781069
[2025-06-06 22:26:10] 2025-06-07 02:25:38,412 | INFO     | task id: 45006595
[2025-06-06 22:26:10] 2025-06-07 02:25:38,413 | INFO     | errors: (none)
[2025-06-06 22:26:10] 2025-06-07 02:25:38,413 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 22:26:10] 2025-06-07 02:25:38,413 | INFO     | pilot state: finished 
[2025-06-06 22:26:10] 2025-06-07 02:25:38,413 | INFO     | transexitcode: 0
[2025-06-06 22:26:10] 2025-06-07 02:25:38,413 | INFO     | exeerrorcode: 0
[2025-06-06 22:26:10] 2025-06-07 02:25:38,414 | INFO     | exeerrordiag: 
[2025-06-06 22:26:10] 2025-06-07 02:25:38,414 | INFO     | exitcode: 0
[2025-06-06 22:26:10] 2025-06-07 02:25:38,414 | INFO     | exitmsg: OK
[2025-06-06 22:26:10] 2025-06-07 02:25:38,414 | INFO     | cpuconsumptiontime: 44829 s
[2025-06-06 22:26:10] 2025-06-07 02:25:38,414 | INFO     | nevents: 400
[2025-06-06 22:26:10] 2025-06-07 02:25:38,414 | INFO     | neventsw: 0
[2025-06-06 22:26:10] 2025-06-07 02:25:38,415 | INFO     | pid: 16910
[2025-06-06 22:26:10] 2025-06-07 02:25:38,415 | INFO     | pgrp: 16910
[2025-06-06 22:26:10] 2025-06-07 02:25:38,415 | INFO     | corecount: 8
[2025-06-06 22:26:10] 2025-06-07 02:25:38,415 | INFO     | event service: False
[2025-06-06 22:26:10] 2025-06-07 02:25:38,415 | INFO     | sizes: {0: 2397461, 1: 2397660, 7: 2397922, 12: 2397950, 6042: 2424702, 6043: 2433827, 6049: 2433965}
[2025-06-06 22:26:10] 2025-06-07 02:25:38,415 | INFO     | --------------------------------------------------
[2025-06-06 22:26:10] 2025-06-07 02:25:38,416 | INFO     | 
[2025-06-06 22:26:10] 2025-06-07 02:25:38,416 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-06 22:26:10] 2025-06-07 02:25:38,444 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 22:26:10] 2025-06-07 02:25:38,444 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 22:26:10] 2025-06-07 02:25:38,445 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 22:26:10] 2025-06-07 02:25:38,445 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 22:26:10] 2025-06-07 02:25:38,445 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 22:26:10] 2025-06-07 02:25:38,446 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 22:26:10] 2025-06-07 02:25:38,446 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 22:26:10] 2025-06-07 02:25:38,446 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 22:26:10] 2025-06-07 02:25:38,446 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 22:26:10] 2025-06-07 02:25:38,446 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 22:26:10] 2025-06-07 02:25:38,447 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 22:26:10] 2025-06-07 02:25:38,447 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 22:26:10] 2025-06-07 02:25:38,447 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 22:26:10] 2025-06-07 02:25:38,447 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 22:26:10] 2025-06-07 02:25:38,448 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 22:26:10] 2025-06-07 02:25:38,448 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 22:26:10] 2025-06-07 02:25:38,448 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 22:26:10] 2025-06-07 02:25:38,448 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 22:26:10] 2025-06-07 02:25:38,449 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 22:26:10] 2025-06-07 02:25:38,449 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 22:26:10] 2025-06-07 02:25:38,449 | INFO     | job 6682781069 has completed (purged errors)
[2025-06-06 22:26:10] 2025-06-07 02:25:38,450 | INFO     | overall cleanup function is called
[2025-06-06 22:26:10] 2025-06-07 02:25:39,458 | INFO     | --- collectZombieJob: --- 10, [16910]
[2025-06-06 22:26:10] 2025-06-07 02:25:39,458 | INFO     | zombie collector waiting for pid 16910
[2025-06-06 22:26:10] 2025-06-07 02:25:39,458 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 22:26:10] 2025-06-07 02:25:39,458 | INFO     | collected zombie processes
[2025-06-06 22:26:10] 2025-06-07 02:25:39,459 | INFO     | will attempt to kill all subprocesses of pid=16910
[2025-06-06 22:26:10] 2025-06-07 02:25:39,546 | INFO     | process IDs to be killed: [16910] (in reverse order)
[2025-06-06 22:26:10] 2025-06-07 02:25:39,602 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 22:26:10] 2025-06-07 02:25:39,603 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 22:26:10] 2025-06-07 02:25:39,609 | INFO     | did not find any defunct processes belonging to 16910
[2025-06-06 22:26:10] 2025-06-07 02:25:39,613 | INFO     | did not find any defunct processes belonging to 16910
[2025-06-06 22:26:10] 2025-06-07 02:25:39,613 | INFO     | ready for new job
[2025-06-06 22:26:10] 2025-06-07 02:25:39,613 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 22:26:10] 2025-06-07 02:25:39,615 | INFO     | ***************************************
[2025-06-06 22:26:10] 2025-06-07 02:25:39,615 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-06 22:26:10] 2025-06-07 02:25:39,615 | INFO     | ***************************************
[2025-06-06 22:26:10] 2025-06-07 02:25:39,616 | INFO     | 
[2025-06-06 22:26:10] 2025-06-07 02:25:39,616 | INFO     | architecture information:
[2025-06-06 22:26:10] 2025-06-07 02:25:39,617 | INFO     | executing command: cat /etc/os-release
[2025-06-06 22:26:10] 2025-06-07 02:25:39,636 | INFO     | cat /etc/os-release:
[2025-06-06 22:26:10] NAME="CentOS Linux"
[2025-06-06 22:26:10] VERSION="7 (Core)"
[2025-06-06 22:26:10] ID="centos"
[2025-06-06 22:26:10] ID_LIKE="rhel fedora"
[2025-06-06 22:26:10] VERSION_ID="7"
[2025-06-06 22:26:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 22:26:10] ANSI_COLOR="0;31"
[2025-06-06 22:26:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 22:26:10] HOME_URL="https://www.centos.org/"
[2025-06-06 22:26:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 22:26:10] 
[2025-06-06 22:26:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 22:26:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 22:26:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 22:26:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 22:26:10] 
[2025-06-06 22:26:10] 2025-06-07 02:25:39,637 | INFO     | ***************************************
[2025-06-06 22:26:10] 2025-06-07 02:25:40,139 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-06 22:26:10] 2025-06-07 02:25:40,158 | INFO     | sufficient remaining disk space (18643681280 B)
[2025-06-06 22:26:10] 2025-06-07 02:25:40,159 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 22:26:10] 2025-06-07 02:25:40,159 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 22:26:10] 2025-06-07 02:25:40,160 | INFO     | update_server=False
[2025-06-06 22:26:10] 2025-06-07 02:25:40,160 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 22:26:10] 2025-06-07 02:25:40,160 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 22:26:10] 2025-06-07 02:25:40,314 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-06 22:26:10] 2025-06-07 02:25:40,315 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-06 22:26:10] 2025-06-07 02:25:40,315 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 22:26:10] 2025-06-07 02:25:40,315 | INFO     | will abort loop
[2025-06-06 22:26:10] 2025-06-07 02:25:40,324 | INFO     | all job control threads have been joined
[2025-06-06 22:26:10] 2025-06-07 02:25:40,330 | INFO     | all payload control threads have been joined
[2025-06-06 22:26:10] 2025-06-07 02:25:40,767 | INFO     | all data control threads have been joined
[2025-06-06 22:26:10] 2025-06-07 02:25:41,165 | INFO     | [job] retrieve thread has finished
[2025-06-06 22:26:10] 2025-06-07 02:25:41,273 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 22:26:10] 2025-06-07 02:25:41,277 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 22:26:10] 2025-06-07 02:25:41,319 | INFO     | [job] job monitor thread has finished
[2025-06-06 22:26:10] 2025-06-07 02:25:41,330 | INFO     | [job] control thread has finished
[2025-06-06 22:26:10] 2025-06-07 02:25:41,336 | INFO     | [payload] control thread has finished
[2025-06-06 22:26:10] 2025-06-07 02:25:41,385 | INFO     | [payload] validate_post thread has finished
[2025-06-06 22:26:10] 2025-06-07 02:25:41,394 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 22:26:10] 2025-06-07 02:25:41,495 | INFO     | [data] copytool_in thread has finished
[2025-06-06 22:26:10] 2025-06-07 02:25:41,773 | INFO     | [data] control thread has finished
[2025-06-06 22:26:10] 2025-06-07 02:25:42,166 | INFO     | [data] copytool_out thread has finished
[2025-06-06 22:26:10] 2025-06-07 02:25:42,202 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 22:26:10] 2025-06-07 02:25:42,232 | INFO     | [payload] failed_post thread has finished
[2025-06-06 22:26:10] 2025-06-07 02:25:42,344 | INFO     | [job] validate thread has finished
[2025-06-06 22:26:10] 2025-06-07 02:25:42,520 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 22:26:10] 2025-06-07 02:25:42,964 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 22:26:10] 2025-06-07 02:25:43,970 | INFO     | [job] queue monitor thread has finished
[2025-06-06 22:26:10] 2025-06-07 02:25:46,526 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 22:26:10] 2025-06-07 02:25:47,164 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140697120634688)>', '<ExcThread(monitor, started 140695931180800)>']
[2025-06-06 22:26:10] 2025-06-07 02:25:52,174 | INFO     | all workflow threads have been joined
[2025-06-06 22:26:10] 2025-06-07 02:25:52,175 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 22:26:10] 2025-06-07 02:25:52,175 | INFO     | traces error code: 0
[2025-06-06 22:26:10] 2025-06-07 02:25:52,175 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 22:26:10] 2025-06-07 02:26:09,947 | INFO     | PID=10499 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-06 22:26:10] 2025-06-07 02:26:09,949 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 22:26:10] 2025-06-07 02:26:09,949 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 22:26:10] 2025-06-07 02:26:09,949 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 22:26:10] 2025-06-07 02:26:09,949 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 22:26:10] 2025-06-07 02:26:09,949 | INFO     | [monitor] control thread has ended
[2025-06-06 22:26:10] 2025-06-07 02:26:10,054 [wrapper] ==== pilot stdout END ====
[2025-06-06 22:26:10] 2025-06-07 02:26:10,059 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 22:26:10] 2025-06-07 02:26:10,064 [wrapper] pilotpid: 10499
[2025-06-06 22:26:10] 2025-06-07 02:26:10,068 [wrapper] Pilot exit status: 0
[2025-06-06 22:26:10] 2025-06-07 02:26:10,088 [wrapper] pandaids: 6682781069
[2025-06-06 22:26:10] 2025-06-07 02:26:10,130 [wrapper] cleanup supervisor_pilot  3515 10500
[2025-06-06 22:26:10] 2025-06-07 02:26:10,135 [wrapper] Test setup, not cleaning
[2025-06-06 22:26:10] 2025-06-07 02:26:10,140 [wrapper] apfmon messages muted
[2025-06-06 22:26:10] 2025-06-07 02:26:10,144 [wrapper] ==== wrapper stdout END ====
[2025-06-06 22:26:10] 2025-06-07 02:26:10,148 [wrapper] ==== wrapper stderr END ====
[2025-06-06 22:26:10]  *** Error codes and diagnostics ***
[2025-06-06 22:26:10]     "exeErrorCode": 0,
[2025-06-06 22:26:10]     "exeErrorDiag": "",
[2025-06-06 22:26:10]     "pilotErrorCode": 0,
[2025-06-06 22:26:10]     "pilotErrorDiag": "",
[2025-06-06 22:26:10]  *** Listing of results directory ***
[2025-06-06 22:26:10] total 388784
[2025-06-06 22:26:10] -rw-r--r-- 1 boincer umatlas    529402 Jun  6 20:28 pilot3.tar.gz
[2025-06-06 22:26:10] -rwx------ 1 boincer umatlas     37140 Jun  6 20:43 runpilot2-wrapper.sh
[2025-06-06 22:26:10] -rw-r--r-- 1 boincer umatlas      5112 Jun  6 20:43 queuedata.json
[2025-06-06 22:26:10] -rw-r--r-- 1 boincer umatlas       100 Jun  6 20:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 22:26:10] -rwxr-xr-x 1 boincer umatlas      7986 Jun  6 20:44 run_atlas
[2025-06-06 22:26:10] -rw-r--r-- 1 boincer umatlas       105 Jun  6 20:44 job.xml
[2025-06-06 22:26:10] -rw-r--r-- 2 boincer umatlas 214627801 Jun  6 20:44 EVNT.45006593._002204.pool.root.1
[2025-06-06 22:26:10] -rw-r--r-- 2 boincer umatlas     15095 Jun  6 20:44 start_atlas.sh
[2025-06-06 22:26:10] drwxrwx--x 2 boincer umatlas      4096 Jun  6 20:44 shared
[2025-06-06 22:26:10] -rw-r--r-- 2 boincer umatlas    541908 Jun  6 20:44 input.tar.gz
[2025-06-06 22:26:10] -rw-r--r-- 1 boincer umatlas         0 Jun  6 20:44 boinc_lockfile
[2025-06-06 22:26:10] -rw-r--r-- 1 boincer umatlas      2524 Jun  6 20:44 pandaJob.out
[2025-06-06 22:26:10] -rw------- 1 boincer umatlas    985748 Jun  6 20:44 agis_schedconf.cvmfs.json
[2025-06-06 22:26:10] -rw------- 1 boincer umatlas   1598969 Jun  6 20:44 agis_ddmendpoints.agis.ALL.json
[2025-06-06 22:26:10] drwx------ 4 boincer umatlas      4096 Jun  6 20:44 pilot3
[2025-06-06 22:26:10] -rw-r--r-- 1 boincer umatlas      5824 Jun  6 22:22 init_data.xml
[2025-06-06 22:26:10] -rw------- 1 boincer umatlas 177839504 Jun  6 22:25 HITS.45006595._057180.pool.root.1
[2025-06-06 22:26:10] -rw-r--r-- 1 boincer umatlas       529 Jun  6 22:25 boinc_task_state.xml
[2025-06-06 22:26:10] -rw------- 1 boincer umatlas      1047 Jun  6 22:25 memory_monitor_summary.json
[2025-06-06 22:26:10] -rw------- 1 boincer umatlas    312504 Jun  6 22:25 log.45006595._057180.job.log.tgz.1
[2025-06-06 22:26:10] -rw------- 1 boincer umatlas      7775 Jun  6 22:25 heartbeat.json
[2025-06-06 22:26:10] -rw-r--r-- 1 boincer umatlas      8192 Jun  6 22:26 boinc_mmap_file
[2025-06-06 22:26:10] -rw------- 1 boincer umatlas       745 Jun  6 22:26 pilotlog.txt
[2025-06-06 22:26:10] -rw------- 1 boincer umatlas        95 Jun  6 22:26 pilot_heartbeat.json
[2025-06-06 22:26:10] -rw------- 1 boincer umatlas    564282 Jun  6 22:26 log.45006595._057180.job.log.1
[2025-06-06 22:26:10] -rw-r--r-- 1 boincer umatlas        27 Jun  6 22:26 wrapper_checkpoint.txt
[2025-06-06 22:26:10] -rw------- 1 boincer umatlas       357 Jun  6 22:26 output.list
[2025-06-06 22:26:10] -rw-r--r-- 1 boincer umatlas       620 Jun  6 22:26 runtime_log
[2025-06-06 22:26:10] -rw------- 1 boincer umatlas    901120 Jun  6 22:26 result.tar.gz
[2025-06-06 22:26:10] -rw------- 1 boincer umatlas       658 Jun  6 22:26 vWaMDm2pwh7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmh7nKDmFenCHo.diag
[2025-06-06 22:26:10] -rw-r--r-- 1 boincer umatlas      8655 Jun  6 22:26 runtime_log.err
[2025-06-06 22:26:10] -rw-r--r-- 1 boincer umatlas     21797 Jun  6 22:26 stderr.txt
[2025-06-06 22:26:10] HITS file was successfully produced:
[2025-06-06 22:26:10] -rw------- 1 boincer umatlas 177839504 Jun  6 22:25 shared/HITS.pool.root.1
[2025-06-06 22:26:10]  *** Contents of shared directory: ***
[2025-06-06 22:26:10] total 384704
[2025-06-06 22:26:10] -rw-r--r-- 2 boincer umatlas 214627801 Jun  6 20:44 ATLAS.root_0
[2025-06-06 22:26:10] -rw-r--r-- 2 boincer umatlas     15095 Jun  6 20:44 start_atlas.sh
[2025-06-06 22:26:10] -rw-r--r-- 2 boincer umatlas    541908 Jun  6 20:44 input.tar.gz
[2025-06-06 22:26:10] -rw------- 1 boincer umatlas 177839504 Jun  6 22:25 HITS.pool.root.1
[2025-06-06 22:26:10] -rw------- 1 boincer umatlas    901120 Jun  6 22:26 result.tar.gz
22:26:12 (6471): run_atlas exited; CPU time 44783.603964
22:26:12 (6471): called boinc_finish(0)

</stderr_txt>
]]>

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