Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:39:04 (28374): wrapper (7.7.26015): starting
18:39:04 (28374): wrapper: running run_atlas (--nthreads 12)
[2025-06-06 18:39:04] Arguments: --nthreads 12
[2025-06-06 18:39:04] Threads: 12
[2025-06-06 18:39:04] Checking for CVMFS
[2025-06-06 18:39:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 18:39:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 18:39:05] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 18:39:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 18:39:05] 2.11.2.0 2949 39172 84904 146878 0 1 14855930 20275201 1 130560 0 16373134 99.986 6109449 7475 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-06 18:39:05] CVMFS is ok
[2025-06-06 18:39:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 18:39:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 18:39:05] Further information can be found at the LHC@home message board.
[2025-06-06 18:39:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 18:39:05] Checking for apptainer binary...
[2025-06-06 18:39:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 18:39:05] Running /usr/bin/apptainer --version
[2025-06-06 18:39:05] apptainer version 1.3.2-1.el7
[2025-06-06 18:39:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 18:39:06] c-205-13.aglt2.org
[2025-06-06 18:39:06] apptainer works
[2025-06-06 18:39:06] Set ATHENA_PROC_NUMBER=12
[2025-06-06 18:39:06] Set ATHENA_CORE_NUMBER=12
[2025-06-06 18:39:06] Starting ATLAS job with PandaID=6668688826
[2025-06-06 18:39:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 20:16:01]  *** The last 200 lines of the pilot log: ***
[2025-06-06 20:16:01]  filetype=log
[2025-06-06 20:16:01]  guid=8733551c-9275-4eba-80c7-ad4b98822c88
[2025-06-06 20:16:01]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-06 20:16:01]  is_altstaged=None
[2025-06-06 20:16:01]  is_tar=False
[2025-06-06 20:16:01]  lfn=log.44871837._087125.job.log.tgz.1
[2025-06-06 20:16:01]  mtime=0
[2025-06-06 20:16:01]  protocol_id=None
[2025-06-06 20:16:01]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 20:16:01]  replicas=None
[2025-06-06 20:16:01]  scope=mc23_13p6TeV
[2025-06-06 20:16:01]  status=None
[2025-06-06 20:16:01]  status_code=0
[2025-06-06 20:16:01]  storage_token=
[2025-06-06 20:16:01]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6668688826/log.44871837._087125.job.log.tgz.1
[2025-06-06 20:16:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/75/log.44871837._087125.job.log.tgz.1
[2025-06-06 20:16:01]  workdir=None
[2025-06-06 20:16:01] ]
[2025-06-06 20:16:01] 2025-06-07 00:15:23,649 | INFO     | transferring file log.44871837._087125.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6668688826/log.44871837._087125.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-06 20:16:01] 2025-06-07 00:15:23,650 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6668688826/log.44871837._087125.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._087125.job
[2025-06-06 20:16:01] 2025-06-07 00:15:23,672 | INFO     | adding to output.list: log.44871837._087125.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/75/log.44871837._087125.job.log.tg
[2025-06-06 20:16:01] 2025-06-07 00:15:23,673 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 20:16:01] 2025-06-07 00:15:23,673 | INFO     | summary of transferred files:
[2025-06-06 20:16:01] 2025-06-07 00:15:23,673 | INFO     |  -- lfn=log.44871837._087125.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 20:16:01] 2025-06-07 00:15:23,674 | INFO     | stage-out finished correctly
[2025-06-06 20:16:01] 2025-06-07 00:15:23,758 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 20:16:01] 2025-06-07 00:15:23,841 | INFO     | job 6668688826 has state=finished
[2025-06-06 20:16:01] 2025-06-07 00:15:23,841 | INFO     | preparing for final server update for job 6668688826 in state='finished'
[2025-06-06 20:16:01] 2025-06-07 00:15:23,842 | INFO     | this job has now completed (state=finished)
[2025-06-06 20:16:01] 2025-06-07 00:15:23,842 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 20:16:01] 2025-06-07 00:15:23,842 | INFO     | log transfer has been attempted: DONE
[2025-06-06 20:16:01] 2025-06-07 00:15:23,842 | INFO     | job 6668688826 has finished - writing final server update
[2025-06-06 20:16:01] 2025-06-07 00:15:23,842 | INFO     | total number of processed events: 400 (read)
[2025-06-06 20:16:01] 2025-06-07 00:15:23,843 | INFO     | executing command: lscpu
[2025-06-06 20:16:01] 2025-06-07 00:15:23,869 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 20:16:01] 2025-06-07 00:15:26,101 | INFO     | monitor loop #431: job 0:6668688826 is in state 'finished'
[2025-06-06 20:16:01] 2025-06-07 00:15:26,101 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 20:16:01] 2025-06-07 00:15:28,461 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-06 20:16:01] 2025-06-07 00:15:28,465 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-06-06 20:16:01] 2025-06-07 00:15:28,468 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668688826/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 20:16:01] 2025-06-07 00:15:28,468 | INFO     | extracted standard info from prmon json
[2025-06-06 20:16:01] 2025-06-07 00:15:28,469 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 20:16:01] 2025-06-07 00:15:28,469 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 20:16:01] 2025-06-07 00:15:28,469 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 20:16:01] 2025-06-07 00:15:28,469 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 20:16:01] 2025-06-07 00:15:28,471 | INFO     | fitting pss+swap vs Time
[2025-06-06 20:16:01] 2025-06-07 00:15:28,471 | INFO     | sum of square deviations: 204163828.0
[2025-06-06 20:16:01] 2025-06-07 00:15:28,472 | INFO     | sum of deviations: -10807521280.000002
[2025-06-06 20:16:01] 2025-06-07 00:15:28,472 | INFO     | mean x: 1749252521.0
[2025-06-06 20:16:01] 2025-06-07 00:15:28,472 | INFO     | mean y: 2763812.2183908047
[2025-06-06 20:16:01] 2025-06-07 00:15:28,472 | INFO     | -- intersect: 92600380295.00273
[2025-06-06 20:16:01] 2025-06-07 00:15:28,472 | INFO     | intersect: 92600380295.00273
[2025-06-06 20:16:01] 2025-06-07 00:15:28,472 | INFO     | chi2: 0.13035132492132423
[2025-06-06 20:16:01] 2025-06-07 00:15:28,473 | INFO     | -- intersect: 92600380295.00273
[2025-06-06 20:16:01] 2025-06-07 00:15:28,473 | INFO     | current memory leak: -52.94 B/s (using 87 data points, chi2=0.13)
[2025-06-06 20:16:01] 2025-06-07 00:15:28,473 | INFO     | could have reported an average CPU frequency of 2095 MHz (7 samples)
[2025-06-06 20:16:01] 2025-06-07 00:15:28,473 | INFO     | ..............................
[2025-06-06 20:16:01] 2025-06-07 00:15:28,473 | INFO     | . Timing measurements:
[2025-06-06 20:16:01] 2025-06-07 00:15:28,473 | INFO     | . get job = 0 s
[2025-06-06 20:16:01] 2025-06-07 00:15:28,473 | INFO     | . initial setup = 2 s
[2025-06-06 20:16:01] 2025-06-07 00:15:28,474 | INFO     | . payload setup = 10 s
[2025-06-06 20:16:01] 2025-06-07 00:15:28,474 | INFO     | . stage-in = 0 s
[2025-06-06 20:16:01] 2025-06-07 00:15:28,474 | INFO     | . payload execution = 5730 s
[2025-06-06 20:16:01] 2025-06-07 00:15:28,474 | INFO     | . stage-out = 0 s
[2025-06-06 20:16:01] 2025-06-07 00:15:28,474 | INFO     | . log creation = 0 s
[2025-06-06 20:16:01] 2025-06-07 00:15:28,474 | INFO     | ..............................
[2025-06-06 20:16:01] 2025-06-07 00:15:28,557 | INFO     | 
[2025-06-06 20:16:01] 2025-06-07 00:15:28,557 | INFO     | job summary report
[2025-06-06 20:16:01] 2025-06-07 00:15:28,557 | INFO     | --------------------------------------------------
[2025-06-06 20:16:01] 2025-06-07 00:15:28,557 | INFO     | PanDA job id: 6668688826
[2025-06-06 20:16:01] 2025-06-07 00:15:28,558 | INFO     | task id: 44871837
[2025-06-06 20:16:01] 2025-06-07 00:15:28,558 | INFO     | errors: (none)
[2025-06-06 20:16:01] 2025-06-07 00:15:28,558 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 20:16:01] 2025-06-07 00:15:28,558 | INFO     | pilot state: finished 
[2025-06-06 20:16:01] 2025-06-07 00:15:28,558 | INFO     | transexitcode: 0
[2025-06-06 20:16:01] 2025-06-07 00:15:28,558 | INFO     | exeerrorcode: 0
[2025-06-06 20:16:01] 2025-06-07 00:15:28,559 | INFO     | exeerrordiag: 
[2025-06-06 20:16:01] 2025-06-07 00:15:28,559 | INFO     | exitcode: 0
[2025-06-06 20:16:01] 2025-06-07 00:15:28,559 | INFO     | exitmsg: OK
[2025-06-06 20:16:01] 2025-06-07 00:15:28,559 | INFO     | cpuconsumptiontime: 61625 s
[2025-06-06 20:16:01] 2025-06-07 00:15:28,559 | INFO     | nevents: 400
[2025-06-06 20:16:01] 2025-06-07 00:15:28,559 | INFO     | neventsw: 0
[2025-06-06 20:16:01] 2025-06-07 00:15:28,559 | INFO     | pid: 6133
[2025-06-06 20:16:01] 2025-06-07 00:15:28,559 | INFO     | pgrp: 6133
[2025-06-06 20:16:01] 2025-06-07 00:15:28,559 | INFO     | corecount: 12
[2025-06-06 20:16:01] 2025-06-07 00:15:28,560 | INFO     | event service: False
[2025-06-06 20:16:01] 2025-06-07 00:15:28,560 | INFO     | sizes: {0: 2397727, 5: 2397989, 11: 2398045, 5743: 2424694, 5744: 2424693, 5746: 2433874, 5751: 2434012}
[2025-06-06 20:16:01] 2025-06-07 00:15:28,560 | INFO     | --------------------------------------------------
[2025-06-06 20:16:01] 2025-06-07 00:15:28,560 | INFO     | 
[2025-06-06 20:16:01] 2025-06-07 00:15:28,560 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-06 20:16:01] 2025-06-07 00:15:28,582 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 20:16:01] 2025-06-07 00:15:28,583 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 20:16:01] 2025-06-07 00:15:28,583 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 20:16:01] 2025-06-07 00:15:28,583 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 20:16:01] 2025-06-07 00:15:28,583 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 20:16:01] 2025-06-07 00:15:28,583 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 20:16:01] 2025-06-07 00:15:28,583 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 20:16:01] 2025-06-07 00:15:28,584 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 20:16:01] 2025-06-07 00:15:28,584 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 20:16:01] 2025-06-07 00:15:28,584 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 20:16:01] 2025-06-07 00:15:28,584 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 20:16:01] 2025-06-07 00:15:28,584 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 20:16:01] 2025-06-07 00:15:28,584 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 20:16:01] 2025-06-07 00:15:28,585 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 20:16:01] 2025-06-07 00:15:28,585 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 20:16:01] 2025-06-07 00:15:28,585 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 20:16:01] 2025-06-07 00:15:28,585 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 20:16:01] 2025-06-07 00:15:28,585 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 20:16:01] 2025-06-07 00:15:28,585 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 20:16:01] 2025-06-07 00:15:28,586 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 20:16:01] 2025-06-07 00:15:28,586 | INFO     | job 6668688826 has completed (purged errors)
[2025-06-06 20:16:01] 2025-06-07 00:15:28,586 | INFO     | overall cleanup function is called
[2025-06-06 20:16:01] 2025-06-07 00:15:29,594 | INFO     | --- collectZombieJob: --- 10, [6133]
[2025-06-06 20:16:01] 2025-06-07 00:15:29,594 | INFO     | zombie collector waiting for pid 6133
[2025-06-06 20:16:01] 2025-06-07 00:15:29,594 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 20:16:01] 2025-06-07 00:15:29,595 | INFO     | collected zombie processes
[2025-06-06 20:16:01] 2025-06-07 00:15:29,595 | INFO     | will attempt to kill all subprocesses of pid=6133
[2025-06-06 20:16:01] 2025-06-07 00:15:29,686 | INFO     | process IDs to be killed: [6133] (in reverse order)
[2025-06-06 20:16:01] 2025-06-07 00:15:29,738 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 20:16:01] 2025-06-07 00:15:29,738 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 20:16:01] 2025-06-07 00:15:29,741 | INFO     | did not find any defunct processes belonging to 6133
[2025-06-06 20:16:01] 2025-06-07 00:15:29,743 | INFO     | did not find any defunct processes belonging to 6133
[2025-06-06 20:16:01] 2025-06-07 00:15:29,743 | INFO     | ready for new job
[2025-06-06 20:16:01] 2025-06-07 00:15:29,743 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 20:16:01] 2025-06-07 00:15:29,744 | INFO     | ***************************************
[2025-06-06 20:16:01] 2025-06-07 00:15:29,744 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-06 20:16:01] 2025-06-07 00:15:29,745 | INFO     | ***************************************
[2025-06-06 20:16:01] 2025-06-07 00:15:29,745 | INFO     | 
[2025-06-06 20:16:01] 2025-06-07 00:15:29,745 | INFO     | architecture information:
[2025-06-06 20:16:01] 2025-06-07 00:15:29,746 | INFO     | executing command: cat /etc/os-release
[2025-06-06 20:16:01] 2025-06-07 00:15:29,761 | INFO     | cat /etc/os-release:
[2025-06-06 20:16:01] NAME="CentOS Linux"
[2025-06-06 20:16:01] VERSION="7 (Core)"
[2025-06-06 20:16:01] ID="centos"
[2025-06-06 20:16:01] ID_LIKE="rhel fedora"
[2025-06-06 20:16:01] VERSION_ID="7"
[2025-06-06 20:16:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 20:16:01] ANSI_COLOR="0;31"
[2025-06-06 20:16:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 20:16:01] HOME_URL="https://www.centos.org/"
[2025-06-06 20:16:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 20:16:01] 
[2025-06-06 20:16:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 20:16:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 20:16:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 20:16:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 20:16:01] 
[2025-06-06 20:16:01] 2025-06-07 00:15:29,761 | INFO     | ***************************************
[2025-06-06 20:16:01] 2025-06-07 00:15:30,264 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-06 20:16:01] 2025-06-07 00:15:30,280 | INFO     | sufficient remaining disk space (29382148096 B)
[2025-06-06 20:16:01] 2025-06-07 00:15:30,281 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 20:16:01] 2025-06-07 00:15:30,281 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 20:16:01] 2025-06-07 00:15:30,281 | INFO     | update_server=False
[2025-06-06 20:16:01] 2025-06-07 00:15:30,281 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 20:16:01] 2025-06-07 00:15:30,282 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 20:16:01] 2025-06-07 00:15:30,282 | INFO     | aborting loop
[2025-06-06 20:16:01] 2025-06-07 00:15:30,282 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 20:16:01] 2025-06-07 00:15:30,282 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 20:16:01] 2025-06-07 00:15:30,324 | INFO     | all data control threads have been joined
[2025-06-06 20:16:01] 2025-06-07 00:15:30,666 | INFO     | all payload control threads have been joined
[2025-06-06 20:16:01] 2025-06-07 00:15:31,277 | INFO     | all job control threads have been joined
[2025-06-06 20:16:01] 2025-06-07 00:15:31,285 | INFO     | [job] queue monitor thread has finished
[2025-06-06 20:16:01] 2025-06-07 00:15:31,287 | INFO     | [job] retrieve thread has finished
[2025-06-06 20:16:01] 2025-06-07 00:15:31,287 | INFO     | [job] job monitor thread has finished
[2025-06-06 20:16:01] 2025-06-07 00:15:31,330 | INFO     | [data] control thread has finished
[2025-06-06 20:16:01] 2025-06-07 00:15:31,331 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 20:16:01] 2025-06-07 00:15:31,395 | INFO     | [data] copytool_in thread has finished
[2025-06-06 20:16:01] 2025-06-07 00:15:31,671 | INFO     | [payload] control thread has finished
[2025-06-06 20:16:01] 2025-06-07 00:15:31,770 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 20:16:01] 2025-06-07 00:15:31,930 | INFO     | [payload] failed_post thread has finished
[2025-06-06 20:16:01] 2025-06-07 00:15:32,189 | INFO     | [job] validate thread has finished
[2025-06-06 20:16:01] 2025-06-07 00:15:32,283 | INFO     | [job] control thread has finished
[2025-06-06 20:16:01] 2025-06-07 00:15:32,443 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 20:16:01] 2025-06-07 00:15:32,447 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 20:16:01] 2025-06-07 00:15:32,526 | INFO     | [payload] validate_post thread has finished
[2025-06-06 20:16:01] 2025-06-07 00:15:33,775 | INFO     | [data] copytool_out thread has finished
[2025-06-06 20:16:01] 2025-06-07 00:15:34,289 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 20:16:01] 2025-06-07 00:15:41,053 | INFO     | job.realtimelogging is not enabled
[2025-06-06 20:16:01] 2025-06-07 00:15:42,061 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 20:16:01] 2025-06-07 00:15:42,074 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140705910691648)>', '<ExcThread(monitor, started 140705326421760)>']
[2025-06-06 20:16:01] 2025-06-07 00:15:47,088 | INFO     | all workflow threads have been joined
[2025-06-06 20:16:01] 2025-06-07 00:15:47,088 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 20:16:01] 2025-06-07 00:15:47,088 | INFO     | traces error code: 0
[2025-06-06 20:16:01] 2025-06-07 00:15:47,089 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 20:16:01] 2025-06-07 00:16:00,920 | INFO     | PID=31968 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-06 20:16:01] 2025-06-07 00:16:00,921 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 20:16:01] 2025-06-07 00:16:00,921 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 20:16:01] 2025-06-07 00:16:00,921 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 20:16:01] 2025-06-07 00:16:00,922 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 20:16:01] 2025-06-07 00:16:00,922 | INFO     | [monitor] control thread has ended
[2025-06-06 20:16:01] 2025-06-07 00:16:01,071 [wrapper] ==== pilot stdout END ====
[2025-06-06 20:16:01] 2025-06-07 00:16:01,075 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 20:16:01] 2025-06-07 00:16:01,079 [wrapper] pilotpid: 31968
[2025-06-06 20:16:01] 2025-06-07 00:16:01,083 [wrapper] Pilot exit status: 0
[2025-06-06 20:16:01] 2025-06-07 00:16:01,099 [wrapper] pandaids: 6668688826
[2025-06-06 20:16:01] 2025-06-07 00:16:01,148 [wrapper] cleanup supervisor_pilot 23379 31969
[2025-06-06 20:16:01] 2025-06-07 00:16:01,152 [wrapper] Test setup, not cleaning
[2025-06-06 20:16:01] 2025-06-07 00:16:01,155 [wrapper] apfmon messages muted
[2025-06-06 20:16:01] 2025-06-07 00:16:01,159 [wrapper] ==== wrapper stdout END ====
[2025-06-06 20:16:01] 2025-06-07 00:16:01,163 [wrapper] ==== wrapper stderr END ====
[2025-06-06 20:16:01]  *** Error codes and diagnostics ***
[2025-06-06 20:16:01]     "exeErrorCode": 0,
[2025-06-06 20:16:01]     "exeErrorDiag": "",
[2025-06-06 20:16:01]     "pilotErrorCode": 0,
[2025-06-06 20:16:01]     "pilotErrorDiag": "",
[2025-06-06 20:16:01]  *** Listing of results directory ***
[2025-06-06 20:16:01] total 418172
[2025-06-06 20:16:01] -rw-r--r-- 1 boincer umatlas    529402 Jun  6 18:36 pilot3.tar.gz
[2025-06-06 20:16:01] -rw-r--r-- 1 boincer umatlas      5112 Jun  6 18:36 queuedata.json
[2025-06-06 20:16:01] -rwx------ 1 boincer umatlas     37140 Jun  6 18:38 runpilot2-wrapper.sh
[2025-06-06 20:16:01] -rw-r--r-- 1 boincer umatlas       100 Jun  6 18:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 20:16:01] -rwxr-xr-x 1 boincer umatlas      7986 Jun  6 18:39 run_atlas
[2025-06-06 20:16:01] -rw-r--r-- 1 boincer umatlas       105 Jun  6 18:39 job.xml
[2025-06-06 20:16:01] -rw-r--r-- 2 boincer umatlas 225020239 Jun  6 18:39 EVNT.44871834._003394.pool.root.1
[2025-06-06 20:16:01] -rw-r--r-- 2 boincer umatlas     15095 Jun  6 18:39 start_atlas.sh
[2025-06-06 20:16:01] drwxrwx--x 2 boincer umatlas      4096 Jun  6 18:39 shared
[2025-06-06 20:16:01] -rw-r--r-- 2 boincer umatlas    541910 Jun  6 18:39 input.tar.gz
[2025-06-06 20:16:01] -rw-r--r-- 1 boincer umatlas         0 Jun  6 18:39 boinc_lockfile
[2025-06-06 20:16:01] -rw-r--r-- 1 boincer umatlas      2556 Jun  6 18:39 pandaJob.out
[2025-06-06 20:16:01] -rw------- 1 boincer umatlas    985748 Jun  6 18:39 agis_schedconf.cvmfs.json
[2025-06-06 20:16:01] -rw------- 1 boincer umatlas   1598969 Jun  6 18:39 agis_ddmendpoints.agis.ALL.json
[2025-06-06 20:16:01] drwx------ 4 boincer umatlas      4096 Jun  6 18:39 pilot3
[2025-06-06 20:16:01] -rw-r--r-- 1 boincer umatlas      5867 Jun  6 20:09 init_data.xml
[2025-06-06 20:16:01] -rw------- 1 boincer umatlas 197500431 Jun  6 20:14 HITS.44871837._087125.pool.root.1
[2025-06-06 20:16:01] -rw-r--r-- 1 boincer umatlas       530 Jun  6 20:15 boinc_task_state.xml
[2025-06-06 20:16:01] -rw------- 1 boincer umatlas      1046 Jun  6 20:15 memory_monitor_summary.json
[2025-06-06 20:16:01] -rw------- 1 boincer umatlas    358887 Jun  6 20:15 log.44871837._087125.job.log.tgz.1
[2025-06-06 20:16:01] -rw------- 1 boincer umatlas      7777 Jun  6 20:15 heartbeat.json
[2025-06-06 20:16:01] -rw-r--r-- 1 boincer umatlas      8192 Jun  6 20:15 boinc_mmap_file
[2025-06-06 20:16:01] -rw-r--r-- 1 boincer umatlas        27 Jun  6 20:15 wrapper_checkpoint.txt
[2025-06-06 20:16:01] -rw------- 1 boincer umatlas        95 Jun  6 20:16 pilot_heartbeat.json
[2025-06-06 20:16:01] -rw------- 1 boincer umatlas       745 Jun  6 20:16 pilotlog.txt
[2025-06-06 20:16:01] -rw------- 1 boincer umatlas    540796 Jun  6 20:16 log.44871837._087125.job.log.1
[2025-06-06 20:16:01] -rw------- 1 boincer umatlas       357 Jun  6 20:16 output.list
[2025-06-06 20:16:01] -rw-r--r-- 1 boincer umatlas       620 Jun  6 20:16 runtime_log
[2025-06-06 20:16:01] -rw------- 1 boincer umatlas    921600 Jun  6 20:16 result.tar.gz
[2025-06-06 20:16:01] -rw------- 1 boincer umatlas       659 Jun  6 20:16 uqfKDmvsuh7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmb7nKDm6lk98n.diag
[2025-06-06 20:16:01] -rw-r--r-- 1 boincer umatlas      8662 Jun  6 20:16 runtime_log.err
[2025-06-06 20:16:01] -rw-r--r-- 1 boincer umatlas     21259 Jun  6 20:16 stderr.txt
[2025-06-06 20:16:01] HITS file was successfully produced:
[2025-06-06 20:16:01] -rw------- 1 boincer umatlas 197500431 Jun  6 20:14 shared/HITS.pool.root.1
[2025-06-06 20:16:01]  *** Contents of shared directory: ***
[2025-06-06 20:16:01] total 414068
[2025-06-06 20:16:01] -rw-r--r-- 2 boincer umatlas 225020239 Jun  6 18:39 ATLAS.root_0
[2025-06-06 20:16:01] -rw-r--r-- 2 boincer umatlas     15095 Jun  6 18:39 start_atlas.sh
[2025-06-06 20:16:01] -rw-r--r-- 2 boincer umatlas    541910 Jun  6 18:39 input.tar.gz
[2025-06-06 20:16:01] -rw------- 1 boincer umatlas 197500431 Jun  6 20:14 HITS.pool.root.1
[2025-06-06 20:16:01] -rw------- 1 boincer umatlas    921600 Jun  6 20:16 result.tar.gz
20:16:02 (28374): run_atlas exited; CPU time 61605.950032
20:16:02 (28374): called boinc_finish(0)

</stderr_txt>
]]>

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