Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:43:28 (30528): wrapper (7.7.26015): starting
17:43:28 (30528): wrapper: running run_atlas (--nthreads 12)
[2025-06-06 17:43:28] Arguments: --nthreads 12
[2025-06-06 17:43:28] Threads: 12
[2025-06-06 17:43:28] Checking for CVMFS
[2025-06-06 17:43:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 17:43:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 17:43:29] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 17:43:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 17:43:29] 2.11.2.0 3087 39072 94700 146876 3 1 14730467 20275200 1 130560 0 17248255 99.986 6330720 7736 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-06 17:43:29] CVMFS is ok
[2025-06-06 17:43:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 17:43:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 17:43:29] Further information can be found at the LHC@home message board.
[2025-06-06 17:43:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 17:43:29] Checking for apptainer binary...
[2025-06-06 17:43:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 17:43:29] Running /usr/bin/apptainer --version
[2025-06-06 17:43:29] apptainer version 1.3.2-1.el7
[2025-06-06 17:43:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 17:43:30] c-115-42.aglt2.org
[2025-06-06 17:43:30] apptainer works
[2025-06-06 17:43:30] Set ATHENA_PROC_NUMBER=12
[2025-06-06 17:43:30] Set ATHENA_CORE_NUMBER=12
[2025-06-06 17:43:30] Starting ATLAS job with PandaID=6672817377
[2025-06-06 17:43:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 19:08:46]  *** The last 200 lines of the pilot log: ***
[2025-06-06 19:08:46]  status_code=0
[2025-06-06 19:08:46]  storage_token=
[2025-06-06 19:08:46]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6672817377/log.44871837._101298.job.log.tgz.1
[2025-06-06 19:08:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/61/b2/log.44871837._101298.job.log.tgz.1
[2025-06-06 19:08:46]  workdir=None
[2025-06-06 19:08:46] ]
[2025-06-06 19:08:46] 2025-06-06 23:08:22,076 | INFO     | transferring file log.44871837._101298.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6672817377/log.44871837._101298.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-06 19:08:46] 2025-06-06 23:08:22,076 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6672817377/log.44871837._101298.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._101298.job
[2025-06-06 19:08:46] 2025-06-06 23:08:22,098 | INFO     | adding to output.list: log.44871837._101298.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/61/b2/log.44871837._101298.job.log.tg
[2025-06-06 19:08:46] 2025-06-06 23:08:22,099 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 19:08:46] 2025-06-06 23:08:22,099 | INFO     | summary of transferred files:
[2025-06-06 19:08:46] 2025-06-06 23:08:22,099 | INFO     |  -- lfn=log.44871837._101298.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 19:08:46] 2025-06-06 23:08:22,099 | INFO     | stage-out finished correctly
[2025-06-06 19:08:46] 2025-06-06 23:08:22,365 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 19:08:46] 2025-06-06 23:08:22,445 | INFO     | job 6672817377 has state=finished
[2025-06-06 19:08:46] 2025-06-06 23:08:22,445 | INFO     | preparing for final server update for job 6672817377 in state='finished'
[2025-06-06 19:08:46] 2025-06-06 23:08:22,446 | INFO     | this job has now completed (state=finished)
[2025-06-06 19:08:46] 2025-06-06 23:08:22,446 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 19:08:46] 2025-06-06 23:08:22,446 | INFO     | log transfer has been attempted: DONE
[2025-06-06 19:08:46] 2025-06-06 23:08:22,446 | INFO     | job 6672817377 has finished - writing final server update
[2025-06-06 19:08:46] 2025-06-06 23:08:22,447 | INFO     | total number of processed events: 400 (read)
[2025-06-06 19:08:46] 2025-06-06 23:08:22,448 | INFO     | executing command: lscpu
[2025-06-06 19:08:46] 2025-06-06 23:08:22,476 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 19:08:46] 2025-06-06 23:08:24,538 | WARNING  | process 8689 can no longer be monitored (due to stat problems) - aborting
[2025-06-06 19:08:46] 2025-06-06 23:08:24,538 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6672817377/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 19:08:46] 2025-06-06 23:08:24,539 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6672817377/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 19:08:46] 2025-06-06 23:08:24,540 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4479675 B
[2025-06-06 19:08:46] 2025-06-06 23:08:24,540 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15785 B
[2025-06-06 19:08:46] 2025-06-06 23:08:24,540 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-06 19:08:46] 2025-06-06 23:08:26,912 | INFO     | PID=2099 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-06 19:08:46] 2025-06-06 23:08:27,238 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-06 19:08:46] 2025-06-06 23:08:27,239 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6672817377/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 19:08:46] 2025-06-06 23:08:27,243 | INFO     | extracted standard info from prmon json
[2025-06-06 19:08:46] 2025-06-06 23:08:27,244 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 19:08:46] 2025-06-06 23:08:27,244 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 19:08:46] 2025-06-06 23:08:27,245 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 19:08:46] 2025-06-06 23:08:27,245 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 19:08:46] 2025-06-06 23:08:27,247 | INFO     | fitting pss+swap vs Time
[2025-06-06 19:08:46] 2025-06-06 23:08:27,247 | INFO     | sum of square deviations: 136095575.0
[2025-06-06 19:08:46] 2025-06-06 23:08:27,248 | INFO     | sum of deviations: -4335047594.0
[2025-06-06 19:08:46] 2025-06-06 23:08:27,248 | INFO     | mean x: 1749248849.5
[2025-06-06 19:08:46] 2025-06-06 23:08:27,248 | INFO     | mean y: 2736739.263157895
[2025-06-06 19:08:46] 2025-06-06 23:08:27,248 | INFO     | -- intersect: 55721499206.97927
[2025-06-06 19:08:46] 2025-06-06 23:08:27,249 | INFO     | intersect: 55721499206.97927
[2025-06-06 19:08:46] 2025-06-06 23:08:27,249 | INFO     | chi2: 0.08049791520368767
[2025-06-06 19:08:46] 2025-06-06 23:08:27,249 | INFO     | -- intersect: 55721499206.97927
[2025-06-06 19:08:46] 2025-06-06 23:08:27,249 | INFO     | current memory leak: -31.85 B/s (using 76 data points, chi2=0.08)
[2025-06-06 19:08:46] 2025-06-06 23:08:27,249 | INFO     | ..............................
[2025-06-06 19:08:46] 2025-06-06 23:08:27,250 | INFO     | . Timing measurements:
[2025-06-06 19:08:46] 2025-06-06 23:08:27,250 | INFO     | . get job = 0 s
[2025-06-06 19:08:46] 2025-06-06 23:08:27,250 | INFO     | . initial setup = 2 s
[2025-06-06 19:08:46] 2025-06-06 23:08:27,250 | INFO     | . payload setup = 9 s
[2025-06-06 19:08:46] 2025-06-06 23:08:27,250 | INFO     | . stage-in = 0 s
[2025-06-06 19:08:46] 2025-06-06 23:08:27,250 | INFO     | . payload execution = 5046 s
[2025-06-06 19:08:46] 2025-06-06 23:08:27,250 | INFO     | . stage-out = 0 s
[2025-06-06 19:08:46] 2025-06-06 23:08:27,250 | INFO     | . log creation = 0 s
[2025-06-06 19:08:46] 2025-06-06 23:08:27,251 | INFO     | ..............................
[2025-06-06 19:08:46] 2025-06-06 23:08:27,278 | INFO     | sufficient remaining disk space (18593349632 B)
[2025-06-06 19:08:46] 2025-06-06 23:08:27,284 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-06 19:08:46] 2025-06-06 23:08:27,329 | INFO     | 
[2025-06-06 19:08:46] 2025-06-06 23:08:27,329 | INFO     | job summary report
[2025-06-06 19:08:46] 2025-06-06 23:08:27,330 | INFO     | --------------------------------------------------
[2025-06-06 19:08:46] 2025-06-06 23:08:27,330 | INFO     | PanDA job id: 6672817377
[2025-06-06 19:08:46] 2025-06-06 23:08:27,330 | INFO     | task id: 44871837
[2025-06-06 19:08:46] 2025-06-06 23:08:27,330 | INFO     | errors: (none)
[2025-06-06 19:08:46] 2025-06-06 23:08:27,330 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 19:08:46] 2025-06-06 23:08:27,330 | INFO     | pilot state: finished 
[2025-06-06 19:08:46] 2025-06-06 23:08:27,330 | INFO     | transexitcode: 0
[2025-06-06 19:08:46] 2025-06-06 23:08:27,331 | INFO     | exeerrorcode: 0
[2025-06-06 19:08:46] 2025-06-06 23:08:27,331 | INFO     | exeerrordiag: 
[2025-06-06 19:08:46] 2025-06-06 23:08:27,331 | INFO     | exitcode: 0
[2025-06-06 19:08:46] 2025-06-06 23:08:27,331 | INFO     | exitmsg: OK
[2025-06-06 19:08:46] 2025-06-06 23:08:27,331 | INFO     | cpuconsumptiontime: 54965 s
[2025-06-06 19:08:46] 2025-06-06 23:08:27,331 | INFO     | nevents: 400
[2025-06-06 19:08:46] 2025-06-06 23:08:27,331 | INFO     | neventsw: 0
[2025-06-06 19:08:46] 2025-06-06 23:08:27,331 | INFO     | pid: 8689
[2025-06-06 19:08:46] 2025-06-06 23:08:27,332 | INFO     | pgrp: 8689
[2025-06-06 19:08:46] 2025-06-06 23:08:27,332 | INFO     | corecount: 12
[2025-06-06 19:08:46] 2025-06-06 23:08:27,332 | INFO     | event service: False
[2025-06-06 19:08:46] 2025-06-06 23:08:27,332 | INFO     | sizes: {0: 2397170, 1: 2397369, 5: 2397575, 11: 2397631, 5059: 2423782, 5060: 2432907, 5065: 2433021}
[2025-06-06 19:08:46] 2025-06-06 23:08:27,332 | INFO     | --------------------------------------------------
[2025-06-06 19:08:46] 2025-06-06 23:08:27,332 | INFO     | 
[2025-06-06 19:08:46] 2025-06-06 23:08:27,332 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-06 19:08:46] 2025-06-06 23:08:27,335 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6672817377: 4781372 B (within 2537553920 B limit)
[2025-06-06 19:08:46] 2025-06-06 23:08:27,336 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6672817377/HITS.44871837._101298.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-06 19:08:46] 2025-06-06 23:08:27,336 | INFO     | total size of present files: 0 B (workdir size: 4781372 B)
[2025-06-06 19:08:46] 2025-06-06 23:08:27,336 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6672817377/HITS.44871837._101298.pool.root.1 since it does not exist
[2025-06-06 19:08:46] 2025-06-06 23:08:27,353 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 19:08:46] 2025-06-06 23:08:27,353 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 19:08:46] 2025-06-06 23:08:27,353 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 19:08:46] 2025-06-06 23:08:27,353 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 19:08:46] 2025-06-06 23:08:27,353 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 19:08:46] 2025-06-06 23:08:27,354 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 19:08:46] 2025-06-06 23:08:27,354 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 19:08:46] 2025-06-06 23:08:27,354 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 19:08:46] 2025-06-06 23:08:27,354 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 19:08:46] 2025-06-06 23:08:27,354 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 19:08:46] 2025-06-06 23:08:27,354 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 19:08:46] 2025-06-06 23:08:27,355 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 19:08:46] 2025-06-06 23:08:27,355 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 19:08:46] 2025-06-06 23:08:27,355 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 19:08:46] 2025-06-06 23:08:27,355 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 19:08:46] 2025-06-06 23:08:27,355 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 19:08:46] 2025-06-06 23:08:27,355 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 19:08:46] 2025-06-06 23:08:27,356 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 19:08:46] 2025-06-06 23:08:27,356 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 19:08:46] 2025-06-06 23:08:27,356 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 19:08:46] 2025-06-06 23:08:27,356 | INFO     | job 6672817377 has completed (purged errors)
[2025-06-06 19:08:46] 2025-06-06 23:08:27,356 | INFO     | overall cleanup function is called
[2025-06-06 19:08:46] 2025-06-06 23:08:27,427 | INFO     | number of running child processes to parent process 8689: 1
[2025-06-06 19:08:46] 2025-06-06 23:08:27,428 | INFO     | maximum number of monitored processes: 6
[2025-06-06 19:08:46] 2025-06-06 23:08:27,428 | INFO     | aborting job monitoring since job object (job id=6672817377) has expired
[2025-06-06 19:08:46] 2025-06-06 23:08:28,364 | INFO     | --- collectZombieJob: --- 10, [8689]
[2025-06-06 19:08:46] 2025-06-06 23:08:28,365 | INFO     | zombie collector waiting for pid 8689
[2025-06-06 19:08:46] 2025-06-06 23:08:28,365 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 19:08:46] 2025-06-06 23:08:28,365 | INFO     | collected zombie processes
[2025-06-06 19:08:46] 2025-06-06 23:08:28,365 | INFO     | will attempt to kill all subprocesses of pid=8689
[2025-06-06 19:08:46] 2025-06-06 23:08:28,453 | INFO     | process IDs to be killed: [8689] (in reverse order)
[2025-06-06 19:08:46] 2025-06-06 23:08:28,502 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 19:08:46] 2025-06-06 23:08:28,502 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 19:08:46] 2025-06-06 23:08:28,505 | INFO     | did not find any defunct processes belonging to 8689
[2025-06-06 19:08:46] 2025-06-06 23:08:28,507 | INFO     | did not find any defunct processes belonging to 8689
[2025-06-06 19:08:46] 2025-06-06 23:08:28,507 | INFO     | ready for new job
[2025-06-06 19:08:46] 2025-06-06 23:08:28,508 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 19:08:46] 2025-06-06 23:08:28,508 | INFO     | **************************************
[2025-06-06 19:08:46] 2025-06-06 23:08:28,509 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 19:08:46] 2025-06-06 23:08:28,509 | INFO     | **************************************
[2025-06-06 19:08:46] 2025-06-06 23:08:28,509 | INFO     | 
[2025-06-06 19:08:46] 2025-06-06 23:08:28,509 | INFO     | architecture information:
[2025-06-06 19:08:46] 2025-06-06 23:08:28,510 | INFO     | executing command: cat /etc/os-release
[2025-06-06 19:08:46] 2025-06-06 23:08:28,524 | INFO     | cat /etc/os-release:
[2025-06-06 19:08:46] NAME="CentOS Linux"
[2025-06-06 19:08:46] VERSION="7 (Core)"
[2025-06-06 19:08:46] ID="centos"
[2025-06-06 19:08:46] ID_LIKE="rhel fedora"
[2025-06-06 19:08:46] VERSION_ID="7"
[2025-06-06 19:08:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 19:08:46] ANSI_COLOR="0;31"
[2025-06-06 19:08:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 19:08:46] HOME_URL="https://www.centos.org/"
[2025-06-06 19:08:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 19:08:46] 
[2025-06-06 19:08:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 19:08:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 19:08:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 19:08:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 19:08:46] 
[2025-06-06 19:08:46] 2025-06-06 23:08:28,525 | INFO     | **************************************
[2025-06-06 19:08:46] 2025-06-06 23:08:29,028 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-06 19:08:46] 2025-06-06 23:08:29,045 | INFO     | sufficient remaining disk space (18598592512 B)
[2025-06-06 19:08:46] 2025-06-06 23:08:29,045 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 19:08:46] 2025-06-06 23:08:29,045 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 19:08:46] 2025-06-06 23:08:29,045 | INFO     | update_server=False
[2025-06-06 19:08:46] 2025-06-06 23:08:29,046 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 19:08:46] 2025-06-06 23:08:29,046 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 19:08:46] 2025-06-06 23:08:29,046 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 19:08:46] 2025-06-06 23:08:29,046 | INFO     | aborting loop
[2025-06-06 19:08:46] 2025-06-06 23:08:29,047 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 19:08:46] 2025-06-06 23:08:29,047 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 19:08:46] 2025-06-06 23:08:29,047 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 19:08:46] 2025-06-06 23:08:29,048 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 19:08:46] 2025-06-06 23:08:29,048 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 19:08:46] 2025-06-06 23:08:29,399 | INFO     | all data control threads have been joined
[2025-06-06 19:08:46] 2025-06-06 23:08:29,779 | INFO     | all payload control threads have been joined
[2025-06-06 19:08:46] 2025-06-06 23:08:30,051 | INFO     | [job] queue monitor thread has finished
[2025-06-06 19:08:46] 2025-06-06 23:08:30,051 | INFO     | [job] retrieve thread has finished
[2025-06-06 19:08:46] 2025-06-06 23:08:30,052 | INFO     | [job] job monitor thread has finished
[2025-06-06 19:08:46] 2025-06-06 23:08:30,189 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 19:08:46] 2025-06-06 23:08:30,362 | INFO     | all job control threads have been joined
[2025-06-06 19:08:46] 2025-06-06 23:08:30,404 | INFO     | [data] control thread has finished
[2025-06-06 19:08:46] 2025-06-06 23:08:30,417 | INFO     | [payload] validate_post thread has finished
[2025-06-06 19:08:46] 2025-06-06 23:08:30,508 | INFO     | [job] validate thread has finished
[2025-06-06 19:08:46] 2025-06-06 23:08:30,691 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 19:08:46] 2025-06-06 23:08:30,784 | INFO     | [payload] control thread has finished
[2025-06-06 19:08:46] 2025-06-06 23:08:30,860 | INFO     | [payload] failed_post thread has finished
[2025-06-06 19:08:46] 2025-06-06 23:08:30,919 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 19:08:46] 2025-06-06 23:08:31,044 | INFO     | [data] copytool_in thread has finished
[2025-06-06 19:08:46] 2025-06-06 23:08:31,346 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 19:08:46] 2025-06-06 23:08:31,367 | INFO     | [job] control thread has finished
[2025-06-06 19:08:46] 2025-06-06 23:08:32,194 | INFO     | [data] copytool_out thread has finished
[2025-06-06 19:08:46] 2025-06-06 23:08:33,050 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 19:08:46] 2025-06-06 23:08:39,420 | INFO     | job.realtimelogging is not enabled
[2025-06-06 19:08:46] 2025-06-06 23:08:40,425 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 19:08:46] 2025-06-06 23:08:40,820 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140186629097280)>', '<ExcThread(monitor, started 140185308227328)>']
[2025-06-06 19:08:46] 2025-06-06 23:08:41,106 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 19:08:46] 2025-06-06 23:08:41,106 | INFO     | [monitor] control thread has ended
[2025-06-06 19:08:46] 2025-06-06 23:08:45,845 | INFO     | all workflow threads have been joined
[2025-06-06 19:08:46] 2025-06-06 23:08:45,846 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 19:08:46] 2025-06-06 23:08:45,846 | INFO     | traces error code: 0
[2025-06-06 19:08:46] 2025-06-06 23:08:45,846 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 19:08:46] 2025-06-06 23:08:45,922 [wrapper] ==== pilot stdout END ====
[2025-06-06 19:08:46] 2025-06-06 23:08:45,925 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 19:08:46] 2025-06-06 23:08:45,929 [wrapper] pilotpid: 2099
[2025-06-06 19:08:46] 2025-06-06 23:08:45,932 [wrapper] Pilot exit status: 0
[2025-06-06 19:08:46] 2025-06-06 23:08:45,947 [wrapper] pandaids: 6672817377
[2025-06-06 19:08:46] 2025-06-06 23:08:45,983 [wrapper] cleanup supervisor_pilot 10805 2100
[2025-06-06 19:08:46] 2025-06-06 23:08:45,987 [wrapper] Test setup, not cleaning
[2025-06-06 19:08:46] 2025-06-06 23:08:45,991 [wrapper] apfmon messages muted
[2025-06-06 19:08:46] 2025-06-06 23:08:45,995 [wrapper] ==== wrapper stdout END ====
[2025-06-06 19:08:46] 2025-06-06 23:08:45,999 [wrapper] ==== wrapper stderr END ====
[2025-06-06 19:08:46]  *** Error codes and diagnostics ***
[2025-06-06 19:08:46]     "exeErrorCode": 0,
[2025-06-06 19:08:46]     "exeErrorDiag": "",
[2025-06-06 19:08:46]     "pilotErrorCode": 0,
[2025-06-06 19:08:46]     "pilotErrorDiag": "",
[2025-06-06 19:08:46]  *** Listing of results directory ***
[2025-06-06 19:08:46] total 416840
[2025-06-06 19:08:46] -rw-r--r-- 1 boincer umatlas      5111 May 29 14:43 queuedata.json
[2025-06-06 19:08:46] -rw-r--r-- 1 boincer umatlas    495897 May 29 14:43 pilot3.tar.gz
[2025-06-06 19:08:46] -rwx------ 1 boincer umatlas     37140 May 29 14:46 runpilot2-wrapper.sh
[2025-06-06 19:08:46] -rw-r--r-- 1 boincer umatlas       100 Jun  6 17:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 19:08:46] -rwxr-xr-x 1 boincer umatlas      7986 Jun  6 17:43 run_atlas
[2025-06-06 19:08:46] -rw-r--r-- 1 boincer umatlas       105 Jun  6 17:43 job.xml
[2025-06-06 19:08:46] -rw-r--r-- 2 boincer umatlas 227425696 Jun  6 17:43 EVNT.44871834._003619.pool.root.1
[2025-06-06 19:08:46] -rw-r--r-- 2 boincer umatlas     15093 Jun  6 17:43 start_atlas.sh
[2025-06-06 19:08:46] drwxrwx--x 2 boincer umatlas      4096 Jun  6 17:43 shared
[2025-06-06 19:08:46] -rw-r--r-- 2 boincer umatlas    508880 Jun  6 17:43 input.tar.gz
[2025-06-06 19:08:46] -rw-r--r-- 1 boincer umatlas         0 Jun  6 17:43 boinc_lockfile
[2025-06-06 19:08:46] -rw-r--r-- 1 boincer umatlas      2558 Jun  6 17:43 pandaJob.out
[2025-06-06 19:08:46] -rw------- 1 boincer umatlas    985756 Jun  6 17:43 agis_schedconf.cvmfs.json
[2025-06-06 19:08:46] -rw------- 1 boincer umatlas   1598969 Jun  6 17:43 agis_ddmendpoints.agis.ALL.json
[2025-06-06 19:08:46] drwx------ 4 boincer umatlas      4096 Jun  6 17:43 pilot3
[2025-06-06 19:08:46] -rw-r--r-- 1 boincer umatlas      5868 Jun  6 19:04 init_data.xml
[2025-06-06 19:08:46] -rw------- 1 boincer umatlas        95 Jun  6 19:07 pilot_heartbeat.json
[2025-06-06 19:08:46] -rw------- 1 boincer umatlas 193868154 Jun  6 19:07 HITS.44871837._101298.pool.root.1
[2025-06-06 19:08:46] -rw-r--r-- 1 boincer umatlas       529 Jun  6 19:07 boinc_task_state.xml
[2025-06-06 19:08:46] -rw------- 1 boincer umatlas      1045 Jun  6 19:08 memory_monitor_summary.json
[2025-06-06 19:08:46] -rw------- 1 boincer umatlas    376977 Jun  6 19:08 log.44871837._101298.job.log.tgz.1
[2025-06-06 19:08:46] -rw------- 1 boincer umatlas      7748 Jun  6 19:08 heartbeat.json
[2025-06-06 19:08:46] -rw-r--r-- 1 boincer umatlas      8192 Jun  6 19:08 boinc_mmap_file
[2025-06-06 19:08:46] -rw-r--r-- 1 boincer umatlas        27 Jun  6 19:08 wrapper_checkpoint.txt
[2025-06-06 19:08:46] -rw------- 1 boincer umatlas      4548 Jun  6 19:08 pilotlog.txt
[2025-06-06 19:08:46] -rw------- 1 boincer umatlas    479664 Jun  6 19:08 log.44871837._101298.job.log.1
[2025-06-06 19:08:46] -rw------- 1 boincer umatlas       357 Jun  6 19:08 output.list
[2025-06-06 19:08:46] -rw-r--r-- 1 boincer umatlas       620 Jun  6 19:08 runtime_log
[2025-06-06 19:08:46] -rw------- 1 boincer umatlas    880640 Jun  6 19:08 result.tar.gz
[2025-06-06 19:08:46] -rw-r--r-- 1 boincer umatlas      8661 Jun  6 19:08 runtime_log.err
[2025-06-06 19:08:46] -rw------- 1 boincer umatlas       659 Jun  6 19:08 IFnLDmxRxe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmpMVKDmBgniJm.diag
[2025-06-06 19:08:46] -rw-r--r-- 1 boincer umatlas     22354 Jun  6 19:08 stderr.txt
[2025-06-06 19:08:46] HITS file was successfully produced:
[2025-06-06 19:08:46] -rw------- 1 boincer umatlas 193868154 Jun  6 19:07 shared/HITS.pool.root.1
[2025-06-06 19:08:46]  *** Contents of shared directory: ***
[2025-06-06 19:08:46] total 412804
[2025-06-06 19:08:46] -rw-r--r-- 2 boincer umatlas 227425696 Jun  6 17:43 ATLAS.root_0
[2025-06-06 19:08:46] -rw-r--r-- 2 boincer umatlas     15093 Jun  6 17:43 start_atlas.sh
[2025-06-06 19:08:46] -rw-r--r-- 2 boincer umatlas    508880 Jun  6 17:43 input.tar.gz
[2025-06-06 19:08:46] -rw------- 1 boincer umatlas 193868154 Jun  6 19:07 HITS.pool.root.1
[2025-06-06 19:08:46] -rw------- 1 boincer umatlas    880640 Jun  6 19:08 result.tar.gz
19:08:47 (30528): run_atlas exited; CPU time 54966.905895
19:08:47 (30528): called boinc_finish(0)

</stderr_txt>
]]>

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