Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:26:42 (4893): wrapper (7.7.26015): starting
17:26:42 (4893): wrapper: running run_atlas (--nthreads 10)
[2025-06-06 17:26:42] Arguments: --nthreads 10
[2025-06-06 17:26:42] Threads: 10
[2025-06-06 17:26:42] Checking for CVMFS
[2025-06-06 17:26:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 17:26:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 17:26:43] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 17:26:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 17:26:43] 2.11.2.0 29162 108884 462172 146876 2 14 16471485 18432000 7012 130560 0 167797064 98.480 537126422 37288 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-06 17:26:43] CVMFS is ok
[2025-06-06 17:26:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 17:26:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 17:26:43] Further information can be found at the LHC@home message board.
[2025-06-06 17:26:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 17:26:43] Checking for apptainer binary...
[2025-06-06 17:26:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 17:26:43] Running /usr/bin/apptainer --version
[2025-06-06 17:26:43] apptainer version 1.3.2-1.el7
[2025-06-06 17:26:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 17:26:46] c-211-28.aglt2.org
[2025-06-06 17:26:46] apptainer works
[2025-06-06 17:26:46] Set ATHENA_PROC_NUMBER=10
[2025-06-06 17:26:46] Set ATHENA_CORE_NUMBER=10
[2025-06-06 17:26:46] Starting ATLAS job with PandaID=6670895932
[2025-06-06 17:26:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:45:09 (40070): wrapper (7.7.26015): starting
17:45:09 (40070): wrapper: running run_atlas (--nthreads 10)
[2025-06-06 17:45:09] Arguments: --nthreads 10
[2025-06-06 17:45:09] Threads: 10
[2025-06-06 17:45:09] This job has been restarted, cleaning up previous attempt
[2025-06-06 17:45:09] Checking for CVMFS
[2025-06-06 17:45:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 17:45:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 17:45:09] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 17:45:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 17:45:09] 2.11.2.0 29162 108902 461900 146876 0 194 17641830 18432000 7012 130560 0 167861802 98.475 537539065 37294 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-06 17:45:09] CVMFS is ok
[2025-06-06 17:45:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 17:45:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 17:45:09] Further information can be found at the LHC@home message board.
[2025-06-06 17:45:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 17:45:09] Checking for apptainer binary...
[2025-06-06 17:45:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 17:45:09] Running /usr/bin/apptainer --version
[2025-06-06 17:45:09] apptainer version 1.3.2-1.el7
[2025-06-06 17:45:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 17:45:12] c-211-28.aglt2.org
[2025-06-06 17:45:12] apptainer works
[2025-06-06 17:45:12] Set ATHENA_PROC_NUMBER=10
[2025-06-06 17:45:12] Set ATHENA_CORE_NUMBER=10
[2025-06-06 17:45:12] Starting ATLAS job with PandaID=6670895932
[2025-06-06 17:45:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 22:42:46]  *** The last 200 lines of the pilot log: ***
[2025-06-06 22:42:46] 2025-06-07 02:42:25,739 | INFO     | -- intersect: -2963214243.238469
[2025-06-06 22:42:46] 2025-06-07 02:42:25,739 | INFO     | intersect: -2963214243.238469
[2025-06-06 22:42:46] 2025-06-07 02:42:25,739 | INFO     | chi2: 0.09628841409606632
[2025-06-06 22:42:46] 2025-06-07 02:42:25,739 | INFO     | current chi2=0.09628841409606632 (change=95.00456640330007 %)
[2025-06-06 22:42:46] 2025-06-07 02:42:25,740 | INFO     | sum of square deviations: 6880207533.501767
[2025-06-06 22:42:46] 2025-06-07 02:42:25,742 | INFO     | sum of deviations: 3471913563.2419915
[2025-06-06 22:42:46] 2025-06-07 02:42:25,742 | INFO     | mean x: 1749255547.4483986
[2025-06-06 22:42:46] 2025-06-07 02:42:25,742 | INFO     | mean y: 2608013.9822064056
[2025-06-06 22:42:46] 2025-06-07 02:42:25,742 | INFO     | -- intersect: -880107228.4272512
[2025-06-06 22:42:46] 2025-06-07 02:42:25,742 | INFO     | intersect: -880107228.4272512
[2025-06-06 22:42:46] 2025-06-07 02:42:25,743 | INFO     | chi2: 0.06639443464474341
[2025-06-06 22:42:46] 2025-06-07 02:42:25,743 | INFO     | current chi2=0.06639443464474341 (change=31.046289142843168 %)
[2025-06-06 22:42:46] 2025-06-07 02:42:25,743 | INFO     | sum of square deviations: 6519416932.3877
[2025-06-06 22:42:46] 2025-06-07 02:42:25,745 | INFO     | sum of deviations: 11267300318.916674
[2025-06-06 22:42:46] 2025-06-07 02:42:25,745 | INFO     | mean x: 1749255699.9528985
[2025-06-06 22:42:46] 2025-06-07 02:42:25,745 | INFO     | mean y: 2604715.9166666665
[2025-06-06 22:42:46] 2025-06-07 02:42:25,745 | INFO     | -- intersect: -3020578110.14745
[2025-06-06 22:42:46] 2025-06-07 02:42:25,745 | INFO     | intersect: -3020578110.14745
[2025-06-06 22:42:46] 2025-06-07 02:42:25,746 | INFO     | chi2: 0.03913297516362335
[2025-06-06 22:42:46] 2025-06-07 02:42:25,746 | INFO     | current chi2=0.03913297516362335 (change=41.05985633733897 %)
[2025-06-06 22:42:46] 2025-06-07 02:42:25,746 | INFO     | sum of square deviations: 6171463781.261986
[2025-06-06 22:42:46] 2025-06-07 02:42:25,748 | INFO     | sum of deviations: 18070296206.273064
[2025-06-06 22:42:46] 2025-06-07 02:42:25,748 | INFO     | mean x: 1749255852.4575646
[2025-06-06 22:42:46] 2025-06-07 02:42:25,748 | INFO     | mean y: 2601749.110701107
[2025-06-06 22:42:46] 2025-06-07 02:42:25,748 | INFO     | -- intersect: -5119290319.743201
[2025-06-06 22:42:46] 2025-06-07 02:42:25,748 | INFO     | intersect: -5119290319.743201
[2025-06-06 22:42:46] 2025-06-07 02:42:25,748 | INFO     | chi2: 0.00421084062783967
[2025-06-06 22:42:46] 2025-06-07 02:42:25,749 | INFO     | current chi2=0.00421084062783967 (change=89.23966141027294 %)
[2025-06-06 22:42:46] 2025-06-07 02:42:25,749 | INFO     | sum of square deviations: 5836098742.695506
[2025-06-06 22:42:46] 2025-06-07 02:42:25,750 | INFO     | sum of deviations: 15507147770.52255
[2025-06-06 22:42:46] 2025-06-07 02:42:25,750 | INFO     | mean x: 1749256004.9661653
[2025-06-06 22:42:46] 2025-06-07 02:42:25,751 | INFO     | mean y: 2602914.1691729324
[2025-06-06 22:42:46] 2025-06-07 02:42:25,751 | INFO     | -- intersect: -4645360143.590135
[2025-06-06 22:42:46] 2025-06-07 02:42:25,751 | INFO     | intersect: -4645360143.590135
[2025-06-06 22:42:46] 2025-06-07 02:42:25,751 | INFO     | chi2: 0.0030158819679674586
[2025-06-06 22:42:46] 2025-06-07 02:42:25,751 | INFO     | current chi2=0.0030158819679674586 (change=28.378149768286846 %)
[2025-06-06 22:42:46] 2025-06-07 02:42:25,752 | INFO     | sum of square deviations: 5513122133.034499
[2025-06-06 22:42:46] 2025-06-07 02:42:25,753 | INFO     | sum of deviations: 13422833748.183907
[2025-06-06 22:42:46] 2025-06-07 02:42:25,753 | INFO     | mean x: 1749256157.4712644
[2025-06-06 22:42:46] 2025-06-07 02:42:25,753 | INFO     | mean y: 2603897.957854406
[2025-06-06 22:42:46] 2025-06-07 02:42:25,753 | INFO     | -- intersect: -4256321266.0671415
[2025-06-06 22:42:46] 2025-06-07 02:42:25,754 | INFO     | intersect: -4256321266.0671415
[2025-06-06 22:42:46] 2025-06-07 02:42:25,754 | INFO     | chi2: 0.0022665657281676624
[2025-06-06 22:42:46] 2025-06-07 02:42:25,754 | INFO     | current chi2=0.0022665657281676624 (change=24.845675253822844 %)
[2025-06-06 22:42:46] 2025-06-07 02:42:25,754 | INFO     | left removable region: 60
[2025-06-06 22:42:46] 2025-06-07 02:42:25,754 | INFO     | sum of square deviations: 3532063796.1155562
[2025-06-06 22:42:46] 2025-06-07 02:42:25,756 | INFO     | sum of deviations: 5454606832.026668
[2025-06-06 22:42:46] 2025-06-07 02:42:25,756 | INFO     | mean x: 1749256889.4755557
[2025-06-06 22:42:46] 2025-06-07 02:42:25,756 | INFO     | mean y: 2607301.1866666665
[2025-06-06 22:42:46] 2025-06-07 02:42:25,756 | INFO     | -- intersect: -2698790275.719082
[2025-06-06 22:42:46] 2025-06-07 02:42:25,756 | INFO     | intersect: -2698790275.719082
[2025-06-06 22:42:46] 2025-06-07 02:42:25,756 | INFO     | chi2: 0.0007154169477261276
[2025-06-06 22:42:46] 2025-06-07 02:42:25,756 | INFO     | -- intersect: -2698790275.719082
[2025-06-06 22:42:46] 2025-06-07 02:42:25,757 | INFO     | current memory leak: 1.54 B/s (using 225 data points, chi2=0.00)
[2025-06-06 22:42:46] 2025-06-07 02:42:25,757 | INFO     | ..............................
[2025-06-06 22:42:46] 2025-06-07 02:42:25,757 | INFO     | . Timing measurements:
[2025-06-06 22:42:46] 2025-06-07 02:42:25,757 | INFO     | . get job = 0 s
[2025-06-06 22:42:46] 2025-06-07 02:42:25,757 | INFO     | . initial setup = 1 s
[2025-06-06 22:42:46] 2025-06-07 02:42:25,758 | INFO     | . payload setup = 14 s
[2025-06-06 22:42:46] 2025-06-07 02:42:25,758 | INFO     | . stage-in = 0 s
[2025-06-06 22:42:46] 2025-06-07 02:42:25,758 | INFO     | . payload execution = 17750 s
[2025-06-06 22:42:46] 2025-06-07 02:42:25,758 | INFO     | . stage-out = 3 s
[2025-06-06 22:42:46] 2025-06-07 02:42:25,758 | INFO     | . log creation = 0 s
[2025-06-06 22:42:46] 2025-06-07 02:42:25,758 | INFO     | ..............................
[2025-06-06 22:42:46] 2025-06-07 02:42:25,876 | INFO     | 
[2025-06-06 22:42:46] 2025-06-07 02:42:25,877 | INFO     | job summary report
[2025-06-06 22:42:46] 2025-06-07 02:42:25,877 | INFO     | --------------------------------------------------
[2025-06-06 22:42:46] 2025-06-07 02:42:25,877 | INFO     | PanDA job id: 6670895932
[2025-06-06 22:42:46] 2025-06-07 02:42:25,877 | INFO     | task id: 44871837
[2025-06-06 22:42:46] 2025-06-07 02:42:25,877 | INFO     | errors: (none)
[2025-06-06 22:42:46] 2025-06-07 02:42:25,877 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 22:42:46] 2025-06-07 02:42:25,877 | INFO     | pilot state: finished 
[2025-06-06 22:42:46] 2025-06-07 02:42:25,877 | INFO     | transexitcode: 0
[2025-06-06 22:42:46] 2025-06-07 02:42:25,877 | INFO     | exeerrorcode: 0
[2025-06-06 22:42:46] 2025-06-07 02:42:25,878 | INFO     | exeerrordiag: 
[2025-06-06 22:42:46] 2025-06-07 02:42:25,878 | INFO     | exitcode: 0
[2025-06-06 22:42:46] 2025-06-07 02:42:25,878 | INFO     | exitmsg: OK
[2025-06-06 22:42:46] 2025-06-07 02:42:25,878 | INFO     | cpuconsumptiontime: 107916 s
[2025-06-06 22:42:46] 2025-06-07 02:42:25,878 | INFO     | nevents: 400
[2025-06-06 22:42:46] 2025-06-07 02:42:25,878 | INFO     | neventsw: 0
[2025-06-06 22:42:46] 2025-06-07 02:42:25,878 | INFO     | pid: 1635
[2025-06-06 22:42:46] 2025-06-07 02:42:25,878 | INFO     | pgrp: 1635
[2025-06-06 22:42:46] 2025-06-07 02:42:25,878 | INFO     | corecount: 10
[2025-06-06 22:42:46] 2025-06-07 02:42:25,878 | INFO     | event service: False
[2025-06-06 22:42:46] 2025-06-07 02:42:25,878 | INFO     | sizes: {0: 2396514, 1: 2397370, 2: 2397370, 12: 2397398, 13: 2397632, 23: 2397688, 17768: 2429642, 17772: 2438583, 17773: 2438639, 17780: 2438809}
[2025-06-06 22:42:46] 2025-06-07 02:42:25,878 | INFO     | --------------------------------------------------
[2025-06-06 22:42:46] 2025-06-07 02:42:25,879 | INFO     | 
[2025-06-06 22:42:46] 2025-06-07 02:42:25,879 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-06 22:42:46] 2025-06-07 02:42:25,898 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 22:42:46] 2025-06-07 02:42:25,898 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 22:42:46] 2025-06-07 02:42:25,898 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 22:42:46] 2025-06-07 02:42:25,899 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 22:42:46] 2025-06-07 02:42:25,899 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 22:42:46] 2025-06-07 02:42:25,899 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 22:42:46] 2025-06-07 02:42:25,899 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 22:42:46] 2025-06-07 02:42:25,899 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 22:42:46] 2025-06-07 02:42:25,899 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 22:42:46] 2025-06-07 02:42:25,899 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 22:42:46] 2025-06-07 02:42:25,899 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 22:42:46] 2025-06-07 02:42:25,899 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 22:42:46] 2025-06-07 02:42:25,899 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 22:42:46] 2025-06-07 02:42:25,899 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 22:42:46] 2025-06-07 02:42:25,900 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 22:42:46] 2025-06-07 02:42:25,900 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 22:42:46] 2025-06-07 02:42:25,900 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 22:42:46] 2025-06-07 02:42:25,900 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 22:42:46] 2025-06-07 02:42:25,900 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 22:42:46] 2025-06-07 02:42:25,900 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 22:42:46] 2025-06-07 02:42:25,900 | INFO     | job 6670895932 has completed (purged errors)
[2025-06-06 22:42:46] 2025-06-07 02:42:25,900 | INFO     | overall cleanup function is called
[2025-06-06 22:42:46] 2025-06-07 02:42:26,908 | INFO     | --- collectZombieJob: --- 10, [1635]
[2025-06-06 22:42:46] 2025-06-07 02:42:26,908 | INFO     | zombie collector waiting for pid 1635
[2025-06-06 22:42:46] 2025-06-07 02:42:26,908 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 22:42:46] 2025-06-07 02:42:26,909 | INFO     | collected zombie processes
[2025-06-06 22:42:46] 2025-06-07 02:42:26,909 | INFO     | will attempt to kill all subprocesses of pid=1635
[2025-06-06 22:42:46] 2025-06-07 02:42:27,143 | INFO     | process IDs to be killed: [1635] (in reverse order)
[2025-06-06 22:42:46] 2025-06-07 02:42:27,665 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 22:42:46] 2025-06-07 02:42:27,666 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 22:42:46] 2025-06-07 02:42:27,674 | INFO     | did not find any defunct processes belonging to 1635
[2025-06-06 22:42:46] 2025-06-07 02:42:27,681 | INFO     | did not find any defunct processes belonging to 1635
[2025-06-06 22:42:46] 2025-06-07 02:42:27,682 | INFO     | ready for new job
[2025-06-06 22:42:46] 2025-06-07 02:42:27,682 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 22:42:46] 2025-06-07 02:42:27,684 | INFO     | **************************************
[2025-06-06 22:42:46] 2025-06-07 02:42:27,684 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 22:42:46] 2025-06-07 02:42:27,684 | INFO     | **************************************
[2025-06-06 22:42:46] 2025-06-07 02:42:27,684 | INFO     | 
[2025-06-06 22:42:46] 2025-06-07 02:42:27,687 | INFO     | architecture information:
[2025-06-06 22:42:46] 2025-06-07 02:42:27,687 | INFO     | executing command: cat /etc/os-release
[2025-06-06 22:42:46] 2025-06-07 02:42:27,985 | INFO     | cat /etc/os-release:
[2025-06-06 22:42:46] NAME="CentOS Linux"
[2025-06-06 22:42:46] VERSION="7 (Core)"
[2025-06-06 22:42:46] ID="centos"
[2025-06-06 22:42:46] ID_LIKE="rhel fedora"
[2025-06-06 22:42:46] VERSION_ID="7"
[2025-06-06 22:42:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 22:42:46] ANSI_COLOR="0;31"
[2025-06-06 22:42:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 22:42:46] HOME_URL="https://www.centos.org/"
[2025-06-06 22:42:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 22:42:46] 
[2025-06-06 22:42:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 22:42:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 22:42:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 22:42:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 22:42:46] 
[2025-06-06 22:42:46] 2025-06-07 02:42:27,985 | INFO     | **************************************
[2025-06-06 22:42:46] 2025-06-07 02:42:28,488 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-06 22:42:46] 2025-06-07 02:42:28,734 | INFO     | sufficient remaining disk space (57586745344 B)
[2025-06-06 22:42:46] 2025-06-07 02:42:28,735 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 22:42:46] 2025-06-07 02:42:28,735 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 22:42:46] 2025-06-07 02:42:28,735 | INFO     | update_server=False
[2025-06-06 22:42:46] 2025-06-07 02:42:28,735 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 22:42:46] 2025-06-07 02:42:28,735 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 22:42:46] 2025-06-07 02:42:28,736 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 22:42:46] 2025-06-07 02:42:28,736 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 22:42:46] 2025-06-07 02:42:28,736 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 22:42:46] 2025-06-07 02:42:28,736 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 22:42:46] 2025-06-07 02:42:29,225 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-06 22:42:46] 2025-06-07 02:42:29,225 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-06 22:42:46] 2025-06-07 02:42:29,225 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 22:42:46] 2025-06-07 02:42:29,226 | INFO     | will abort loop
[2025-06-06 22:42:46] 2025-06-07 02:42:29,346 | INFO     | all job control threads have been joined
[2025-06-06 22:42:46] 2025-06-07 02:42:29,386 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 22:42:46] 2025-06-07 02:42:29,470 | INFO     | all data control threads have been joined
[2025-06-06 22:42:46] 2025-06-07 02:42:29,741 | INFO     | [job] retrieve thread has finished
[2025-06-06 22:42:46] 2025-06-07 02:42:29,779 | INFO     | all payload control threads have been joined
[2025-06-06 22:42:46] 2025-06-07 02:42:30,114 | INFO     | [payload] failed_post thread has finished
[2025-06-06 22:42:46] 2025-06-07 02:42:30,193 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 22:42:46] 2025-06-07 02:42:30,230 | INFO     | [job] job monitor thread has finished
[2025-06-06 22:42:46] 2025-06-07 02:42:30,347 | INFO     | [job] control thread has finished
[2025-06-06 22:42:46] 2025-06-07 02:42:30,476 | INFO     | [data] control thread has finished
[2025-06-06 22:42:46] 2025-06-07 02:42:30,714 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 22:42:46] 2025-06-07 02:42:30,725 | INFO     | [payload] validate_post thread has finished
[2025-06-06 22:42:46] 2025-06-07 02:42:30,726 | INFO     | [data] copytool_in thread has finished
[2025-06-06 22:42:46] 2025-06-07 02:42:30,744 | INFO     | [data] copytool_out thread has finished
[2025-06-06 22:42:46] 2025-06-07 02:42:30,786 | INFO     | [payload] control thread has finished
[2025-06-06 22:42:46] 2025-06-07 02:42:30,871 | INFO     | [job] validate thread has finished
[2025-06-06 22:42:46] 2025-06-07 02:42:30,891 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 22:42:46] 2025-06-07 02:42:31,075 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 22:42:46] 2025-06-07 02:42:31,896 | INFO     | [job] queue monitor thread has finished
[2025-06-06 22:42:46] 2025-06-07 02:42:33,391 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 22:42:46] 2025-06-07 02:42:39,730 | INFO     | job.realtimelogging is not enabled
[2025-06-06 22:42:46] 2025-06-07 02:42:40,736 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 22:42:46] 2025-06-07 02:42:41,227 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140569615230784)>', '<ExcThread(monitor, started 140568885708544)>']
[2025-06-06 22:42:46] 2025-06-07 02:42:41,808 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 22:42:46] 2025-06-07 02:42:41,808 | INFO     | [monitor] control thread has ended
[2025-06-06 22:42:46] 2025-06-07 02:42:46,252 | INFO     | all workflow threads have been joined
[2025-06-06 22:42:46] 2025-06-07 02:42:46,252 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 22:42:46] 2025-06-07 02:42:46,253 | INFO     | traces error code: 0
[2025-06-06 22:42:46] 2025-06-07 02:42:46,253 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 22:42:46] 2025-06-07 02:42:46,366 [wrapper] ==== pilot stdout END ====
[2025-06-06 22:42:46] 2025-06-07 02:42:46,369 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 22:42:46] 2025-06-07 02:42:46,372 [wrapper] pilotpid: 43718
[2025-06-06 22:42:46] 2025-06-07 02:42:46,375 [wrapper] Pilot exit status: 0
[2025-06-06 22:42:46] 2025-06-07 02:42:46,391 [wrapper] pandaids: 6670895932 6670895932
[2025-06-06 22:42:46] 2025-06-07 02:42:46,461 [wrapper] cleanup supervisor_pilot 26065 43719
[2025-06-06 22:42:46] 2025-06-07 02:42:46,464 [wrapper] Test setup, not cleaning
[2025-06-06 22:42:46] 2025-06-07 02:42:46,467 [wrapper] apfmon messages muted
[2025-06-06 22:42:46] 2025-06-07 02:42:46,471 [wrapper] ==== wrapper stdout END ====
[2025-06-06 22:42:46] 2025-06-07 02:42:46,474 [wrapper] ==== wrapper stderr END ====
[2025-06-06 22:42:46]  *** Error codes and diagnostics ***
[2025-06-06 22:42:46]     "exeErrorCode": 0,
[2025-06-06 22:42:46]     "exeErrorDiag": "",
[2025-06-06 22:42:46]     "pilotErrorCode": 0,
[2025-06-06 22:42:46]     "pilotErrorDiag": "",
[2025-06-06 22:42:46]  *** Listing of results directory ***
[2025-06-06 22:42:46] total 638588
[2025-06-06 22:42:46] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-06-06 22:42:46] -rw-r--r-- 1 boincer umatlas    495897 May 29 06:51 pilot3.tar.gz
[2025-06-06 22:42:46] -rw-r--r-- 1 boincer umatlas      5111 May 29 06:59 queuedata.json
[2025-06-06 22:42:46] -rwx------ 1 boincer umatlas     37140 May 29 06:59 runpilot2-wrapper.sh
[2025-06-06 22:42:46] -rw-r--r-- 1 boincer umatlas       100 Jun  6 17:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 22:42:46] -rwxr-xr-x 1 boincer umatlas      7986 Jun  6 17:26 run_atlas
[2025-06-06 22:42:46] -rw-r--r-- 1 boincer umatlas       105 Jun  6 17:26 job.xml
[2025-06-06 22:42:46] -rw-r--r-- 3 boincer umatlas 221059197 Jun  6 17:26 EVNT.44871834._002278.pool.root.1
[2025-06-06 22:42:46] -rw-r--r-- 3 boincer umatlas 221059197 Jun  6 17:26 ATLAS.root_0
[2025-06-06 22:42:46] -rw-r--r-- 2 boincer umatlas     15093 Jun  6 17:26 start_atlas.sh
[2025-06-06 22:42:46] drwxrwx--x 2 boincer umatlas      4096 Jun  6 17:26 shared
[2025-06-06 22:42:46] -rw-r--r-- 2 boincer umatlas    508884 Jun  6 17:26 input.tar.gz
[2025-06-06 22:42:46] -rw-r--r-- 1 boincer umatlas         0 Jun  6 17:26 boinc_lockfile
[2025-06-06 22:42:46] -rw-r--r-- 1 boincer umatlas      2559 Jun  6 17:45 pandaJob.out
[2025-06-06 22:42:46] -rw------- 1 boincer umatlas    985756 Jun  6 17:45 agis_schedconf.cvmfs.json
[2025-06-06 22:42:46] -rw-r--r-- 1 boincer umatlas      6037 Jun  6 22:37 init_data.xml
[2025-06-06 22:42:46] -rw------- 1 boincer umatlas 203845731 Jun  6 22:41 HITS.44871837._099188.pool.root.1
[2025-06-06 22:42:46] -rw-r--r-- 1 boincer umatlas       532 Jun  6 22:41 boinc_task_state.xml
[2025-06-06 22:42:46] -rw------- 1 boincer umatlas        96 Jun  6 22:41 pilot_heartbeat.json
[2025-06-06 22:42:46] -rw------- 1 boincer umatlas      1053 Jun  6 22:42 memory_monitor_summary.json
[2025-06-06 22:42:46] -rw------- 1 boincer umatlas   1598969 Jun  6 22:42 agis_ddmendpoints.agis.ALL.json
[2025-06-06 22:42:46] -rw------- 1 boincer umatlas    468179 Jun  6 22:42 log.44871837._099188.job.log.tgz.1
[2025-06-06 22:42:46] -rw------- 1 boincer umatlas      7746 Jun  6 22:42 heartbeat.json
[2025-06-06 22:42:46] -rw-r--r-- 1 boincer umatlas        29 Jun  6 22:42 wrapper_checkpoint.txt
[2025-06-06 22:42:46] -rw-r--r-- 1 boincer umatlas      8192 Jun  6 22:42 boinc_mmap_file
[2025-06-06 22:42:46] -rw------- 1 boincer umatlas      4734 Jun  6 22:42 pilotlog.txt
[2025-06-06 22:42:46] -rw------- 1 boincer umatlas   1588502 Jun  6 22:42 log.44871837._099188.job.log.1
[2025-06-06 22:42:46] -rw------- 1 boincer umatlas       357 Jun  6 22:42 output.list
[2025-06-06 22:42:46] -rw-r--r-- 1 boincer umatlas       620 Jun  6 22:42 runtime_log
[2025-06-06 22:42:46] -rw------- 1 boincer umatlas   2078720 Jun  6 22:42 result.tar.gz
[2025-06-06 22:42:46] -rw------- 1 boincer umatlas       788 Jun  6 22:42 TXfNDmAAqe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJPeKDmILE5Ym.diag
[2025-06-06 22:42:46] -rw-r--r-- 1 boincer umatlas      8747 Jun  6 22:42 runtime_log.err
[2025-06-06 22:42:46] -rw-r--r-- 1 boincer umatlas     23124 Jun  6 22:42 stderr.txt
[2025-06-06 22:42:46] HITS file was successfully produced:
[2025-06-06 22:42:46] -rw------- 1 boincer umatlas 203845731 Jun  6 22:41 shared/HITS.pool.root.1
[2025-06-06 22:42:46]  *** Contents of shared directory: ***
[2025-06-06 22:42:46] total 417504
[2025-06-06 22:42:46] -rw-r--r-- 3 boincer umatlas 221059197 Jun  6 17:26 ATLAS.root_0
[2025-06-06 22:42:46] -rw-r--r-- 2 boincer umatlas     15093 Jun  6 17:26 start_atlas.sh
[2025-06-06 22:42:46] -rw-r--r-- 2 boincer umatlas    508884 Jun  6 17:26 input.tar.gz
[2025-06-06 22:42:46] -rw------- 1 boincer umatlas 203845731 Jun  6 22:41 HITS.pool.root.1
[2025-06-06 22:42:46] -rw------- 1 boincer umatlas   2078720 Jun  6 22:42 result.tar.gz
22:42:47 (40070): run_atlas exited; CPU time 108328.323977
22:42:47 (40070): called boinc_finish(0)

</stderr_txt>
]]>

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