Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:39:00 (2617): wrapper (7.7.26015): starting
16:39:00 (2617): wrapper: running run_atlas (--nthreads 12)
[2025-06-06 16:39:00] Arguments: --nthreads 12
[2025-06-06 16:39:00] Threads: 12
[2025-06-06 16:39:00] Checking for CVMFS
[2025-06-06 16:39:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 16:39:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 16:39:00] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 16:39:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 16:39:00] 2.11.2.0 2979 39053 95196 146874 1 1 10508458 20275201 1 130560 0 16630409 99.983 6630629 7957 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-06 16:39:00] CVMFS is ok
[2025-06-06 16:39:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 16:39:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 16:39:00] Further information can be found at the LHC@home message board.
[2025-06-06 16:39:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 16:39:00] Checking for apptainer binary...
[2025-06-06 16:39:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 16:39:00] Running /usr/bin/apptainer --version
[2025-06-06 16:39:00] apptainer version 1.3.2-1.el7
[2025-06-06 16:39:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 16:39:01] c-205-7.aglt2.org
[2025-06-06 16:39:01] apptainer works
[2025-06-06 16:39:01] Set ATHENA_PROC_NUMBER=12
[2025-06-06 16:39:01] Set ATHENA_CORE_NUMBER=12
[2025-06-06 16:39:01] Starting ATLAS job with PandaID=6682577428
[2025-06-06 16:39:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 17:44:06]  *** The last 200 lines of the pilot log: ***
[2025-06-06 17:44:06]  lfn=log.45006595._057173.job.log.tgz.1
[2025-06-06 17:44:06]  mtime=0
[2025-06-06 17:44:06]  protocol_id=None
[2025-06-06 17:44:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 17:44:06]  replicas=None
[2025-06-06 17:44:06]  scope=mc23_13p6TeV
[2025-06-06 17:44:06]  status=None
[2025-06-06 17:44:06]  status_code=0
[2025-06-06 17:44:06]  storage_token=
[2025-06-06 17:44:06]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6682577428/log.45006595._057173.job.log.tgz.1
[2025-06-06 17:44:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e2/77/log.45006595._057173.job.log.tgz.1
[2025-06-06 17:44:06]  workdir=None
[2025-06-06 17:44:06] ]
[2025-06-06 17:44:06] 2025-06-06 21:43:26,127 | INFO     | transferring file log.45006595._057173.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6682577428/log.45006595._057173.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-06 17:44:06] 2025-06-06 21:43:26,127 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6682577428/log.45006595._057173.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._057173.job
[2025-06-06 17:44:06] 2025-06-06 21:43:26,148 | INFO     | adding to output.list: log.45006595._057173.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e2/77/log.45006595._057173.job.log.tg
[2025-06-06 17:44:06] 2025-06-06 21:43:26,149 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 17:44:06] 2025-06-06 21:43:26,149 | INFO     | summary of transferred files:
[2025-06-06 17:44:06] 2025-06-06 21:43:26,149 | INFO     |  -- lfn=log.45006595._057173.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 17:44:06] 2025-06-06 21:43:26,149 | INFO     | stage-out finished correctly
[2025-06-06 17:44:06] 2025-06-06 21:43:26,234 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 17:44:06] 2025-06-06 21:43:29,226 | INFO     | job 6682577428 has state=finished
[2025-06-06 17:44:06] 2025-06-06 21:43:29,227 | INFO     | preparing for final server update for job 6682577428 in state='finished'
[2025-06-06 17:44:06] 2025-06-06 21:43:29,227 | INFO     | this job has now completed (state=finished)
[2025-06-06 17:44:06] 2025-06-06 21:43:29,228 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 17:44:06] 2025-06-06 21:43:29,228 | INFO     | log transfer has been attempted: DONE
[2025-06-06 17:44:06] 2025-06-06 21:43:29,228 | INFO     | job 6682577428 has finished - writing final server update
[2025-06-06 17:44:06] 2025-06-06 21:43:29,228 | INFO     | total number of processed events: 400 (read)
[2025-06-06 17:44:06] 2025-06-06 21:43:29,229 | INFO     | executing command: lscpu
[2025-06-06 17:44:06] 2025-06-06 21:43:29,254 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 17:44:06] 2025-06-06 21:43:30,261 | WARNING  | process 12750 can no longer be monitored (due to stat problems) - aborting
[2025-06-06 17:44:06] 2025-06-06 21:43:30,261 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6682577428/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 17:44:06] 2025-06-06 21:43:30,350 | INFO     | number of running child processes to parent process 12750: 1
[2025-06-06 17:44:06] 2025-06-06 21:43:30,350 | INFO     | maximum number of monitored processes: 6
[2025-06-06 17:44:06] 2025-06-06 21:43:32,143 | INFO     | PID=6338 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-06 17:44:06] 2025-06-06 21:43:32,853 | INFO     | monitor loop #288: job 0:6682577428 is in state 'finished'
[2025-06-06 17:44:06] 2025-06-06 21:43:32,853 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 17:44:06] 2025-06-06 21:43:33,828 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-06 17:44:06] 2025-06-06 21:43:33,832 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-06-06 17:44:06] 2025-06-06 21:43:33,834 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6682577428/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 17:44:06] 2025-06-06 21:43:33,835 | INFO     | extracted standard info from prmon json
[2025-06-06 17:44:06] 2025-06-06 21:43:33,835 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 17:44:06] 2025-06-06 21:43:33,835 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 17:44:06] 2025-06-06 21:43:33,836 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 17:44:06] 2025-06-06 21:43:33,836 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 17:44:06] 2025-06-06 21:43:33,837 | INFO     | fitting pss+swap vs Time
[2025-06-06 17:44:06] 2025-06-06 21:43:33,838 | INFO     | sum of square deviations: 54438230.0
[2025-06-06 17:44:06] 2025-06-06 21:43:33,838 | INFO     | sum of deviations: -6048172051.5
[2025-06-06 17:44:06] 2025-06-06 21:43:33,838 | INFO     | mean x: 1749244370.5
[2025-06-06 17:44:06] 2025-06-06 21:43:33,838 | INFO     | mean y: 2819406.625
[2025-06-06 17:44:06] 2025-06-06 21:43:33,838 | INFO     | -- intersect: 194346590556.08762
[2025-06-06 17:44:06] 2025-06-06 21:43:33,838 | INFO     | intersect: 194346590556.08762
[2025-06-06 17:44:06] 2025-06-06 21:43:33,839 | INFO     | chi2: 0.04970522950565988
[2025-06-06 17:44:06] 2025-06-06 21:43:33,839 | INFO     | -- intersect: 194346590556.08762
[2025-06-06 17:44:06] 2025-06-06 21:43:33,839 | INFO     | current memory leak: -111.10 B/s (using 56 data points, chi2=0.05)
[2025-06-06 17:44:06] 2025-06-06 21:43:33,839 | INFO     | could have reported an average CPU frequency of 2041 MHz (6 samples)
[2025-06-06 17:44:06] 2025-06-06 21:43:33,839 | INFO     | ..............................
[2025-06-06 17:44:06] 2025-06-06 21:43:33,839 | INFO     | . Timing measurements:
[2025-06-06 17:44:06] 2025-06-06 21:43:33,839 | INFO     | . get job = 0 s
[2025-06-06 17:44:06] 2025-06-06 21:43:33,840 | INFO     | . initial setup = 2 s
[2025-06-06 17:44:06] 2025-06-06 21:43:33,840 | INFO     | . payload setup = 10 s
[2025-06-06 17:44:06] 2025-06-06 21:43:33,840 | INFO     | . stage-in = 0 s
[2025-06-06 17:44:06] 2025-06-06 21:43:33,840 | INFO     | . payload execution = 3818 s
[2025-06-06 17:44:06] 2025-06-06 21:43:33,840 | INFO     | . stage-out = 0 s
[2025-06-06 17:44:06] 2025-06-06 21:43:33,840 | INFO     | . log creation = 0 s
[2025-06-06 17:44:06] 2025-06-06 21:43:33,840 | INFO     | ..............................
[2025-06-06 17:44:06] 2025-06-06 21:43:33,924 | INFO     | 
[2025-06-06 17:44:06] 2025-06-06 21:43:33,924 | INFO     | job summary report
[2025-06-06 17:44:06] 2025-06-06 21:43:33,924 | INFO     | --------------------------------------------------
[2025-06-06 17:44:06] 2025-06-06 21:43:33,925 | INFO     | PanDA job id: 6682577428
[2025-06-06 17:44:06] 2025-06-06 21:43:33,925 | INFO     | task id: 45006595
[2025-06-06 17:44:06] 2025-06-06 21:43:33,925 | INFO     | errors: (none)
[2025-06-06 17:44:06] 2025-06-06 21:43:33,925 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 17:44:06] 2025-06-06 21:43:33,925 | INFO     | pilot state: finished 
[2025-06-06 17:44:06] 2025-06-06 21:43:33,925 | INFO     | transexitcode: 0
[2025-06-06 17:44:06] 2025-06-06 21:43:33,926 | INFO     | exeerrorcode: 0
[2025-06-06 17:44:06] 2025-06-06 21:43:33,926 | INFO     | exeerrordiag: 
[2025-06-06 17:44:06] 2025-06-06 21:43:33,926 | INFO     | exitcode: 0
[2025-06-06 17:44:06] 2025-06-06 21:43:33,926 | INFO     | exitmsg: OK
[2025-06-06 17:44:06] 2025-06-06 21:43:33,926 | INFO     | cpuconsumptiontime: 41306 s
[2025-06-06 17:44:06] 2025-06-06 21:43:33,926 | INFO     | nevents: 400
[2025-06-06 17:44:06] 2025-06-06 21:43:33,926 | INFO     | neventsw: 0
[2025-06-06 17:44:06] 2025-06-06 21:43:33,926 | INFO     | pid: 12750
[2025-06-06 17:44:06] 2025-06-06 21:43:33,926 | INFO     | pgrp: 12750
[2025-06-06 17:44:06] 2025-06-06 21:43:33,927 | INFO     | corecount: 12
[2025-06-06 17:44:06] 2025-06-06 21:43:33,927 | INFO     | event service: False
[2025-06-06 17:44:06] 2025-06-06 21:43:33,927 | INFO     | sizes: {0: 2397632, 5: 2397894, 11: 2397950, 3831: 2423730, 3832: 2423729, 3833: 2432910, 3841: 2433048}
[2025-06-06 17:44:06] 2025-06-06 21:43:33,927 | INFO     | --------------------------------------------------
[2025-06-06 17:44:06] 2025-06-06 21:43:33,927 | INFO     | 
[2025-06-06 17:44:06] 2025-06-06 21:43:33,927 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-06 17:44:06] 2025-06-06 21:43:33,949 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 17:44:06] 2025-06-06 21:43:33,949 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 17:44:06] 2025-06-06 21:43:33,949 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 17:44:06] 2025-06-06 21:43:33,949 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 17:44:06] 2025-06-06 21:43:33,950 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 17:44:06] 2025-06-06 21:43:33,950 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 17:44:06] 2025-06-06 21:43:33,950 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 17:44:06] 2025-06-06 21:43:33,950 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 17:44:06] 2025-06-06 21:43:33,950 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 17:44:06] 2025-06-06 21:43:33,950 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 17:44:06] 2025-06-06 21:43:33,951 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 17:44:06] 2025-06-06 21:43:33,951 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 17:44:06] 2025-06-06 21:43:33,951 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 17:44:06] 2025-06-06 21:43:33,951 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 17:44:06] 2025-06-06 21:43:33,951 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 17:44:06] 2025-06-06 21:43:33,951 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 17:44:06] 2025-06-06 21:43:33,951 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 17:44:06] 2025-06-06 21:43:33,952 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 17:44:06] 2025-06-06 21:43:33,952 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 17:44:06] 2025-06-06 21:43:33,952 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 17:44:06] 2025-06-06 21:43:33,952 | INFO     | job 6682577428 has completed (purged errors)
[2025-06-06 17:44:06] 2025-06-06 21:43:33,952 | INFO     | overall cleanup function is called
[2025-06-06 17:44:06] 2025-06-06 21:43:34,958 | INFO     | --- collectZombieJob: --- 10, [12750]
[2025-06-06 17:44:06] 2025-06-06 21:43:34,958 | INFO     | zombie collector waiting for pid 12750
[2025-06-06 17:44:06] 2025-06-06 21:43:34,958 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 17:44:06] 2025-06-06 21:43:34,958 | INFO     | collected zombie processes
[2025-06-06 17:44:06] 2025-06-06 21:43:34,958 | INFO     | will attempt to kill all subprocesses of pid=12750
[2025-06-06 17:44:06] 2025-06-06 21:43:35,049 | INFO     | process IDs to be killed: [12750] (in reverse order)
[2025-06-06 17:44:06] 2025-06-06 21:43:35,098 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 17:44:06] 2025-06-06 21:43:35,099 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 17:44:06] 2025-06-06 21:43:35,102 | INFO     | did not find any defunct processes belonging to 12750
[2025-06-06 17:44:06] 2025-06-06 21:43:35,105 | INFO     | did not find any defunct processes belonging to 12750
[2025-06-06 17:44:06] 2025-06-06 21:43:35,106 | INFO     | ready for new job
[2025-06-06 17:44:06] 2025-06-06 21:43:35,106 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 17:44:06] 2025-06-06 21:43:35,107 | INFO     | ***************************************
[2025-06-06 17:44:06] 2025-06-06 21:43:35,107 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-06 17:44:06] 2025-06-06 21:43:35,107 | INFO     | ***************************************
[2025-06-06 17:44:06] 2025-06-06 21:43:35,107 | INFO     | 
[2025-06-06 17:44:06] 2025-06-06 21:43:35,108 | INFO     | architecture information:
[2025-06-06 17:44:06] 2025-06-06 21:43:35,108 | INFO     | executing command: cat /etc/os-release
[2025-06-06 17:44:06] 2025-06-06 21:43:35,122 | INFO     | cat /etc/os-release:
[2025-06-06 17:44:06] NAME="CentOS Linux"
[2025-06-06 17:44:06] VERSION="7 (Core)"
[2025-06-06 17:44:06] ID="centos"
[2025-06-06 17:44:06] ID_LIKE="rhel fedora"
[2025-06-06 17:44:06] VERSION_ID="7"
[2025-06-06 17:44:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 17:44:06] ANSI_COLOR="0;31"
[2025-06-06 17:44:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 17:44:06] HOME_URL="https://www.centos.org/"
[2025-06-06 17:44:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 17:44:06] 
[2025-06-06 17:44:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 17:44:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 17:44:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 17:44:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 17:44:06] 
[2025-06-06 17:44:06] 2025-06-06 21:43:35,122 | INFO     | ***************************************
[2025-06-06 17:44:06] 2025-06-06 21:43:35,625 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-06 17:44:06] 2025-06-06 21:43:35,641 | INFO     | sufficient remaining disk space (29416751104 B)
[2025-06-06 17:44:06] 2025-06-06 21:43:35,641 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 17:44:06] 2025-06-06 21:43:35,642 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 17:44:06] 2025-06-06 21:43:35,642 | INFO     | update_server=False
[2025-06-06 17:44:06] 2025-06-06 21:43:35,642 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 17:44:06] 2025-06-06 21:43:35,642 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 17:44:06] 2025-06-06 21:43:35,880 | INFO     | all payload control threads have been joined
[2025-06-06 17:44:06] 2025-06-06 21:43:36,366 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 17:44:06] 2025-06-06 21:43:36,366 | INFO     | aborting loop
[2025-06-06 17:44:06] 2025-06-06 21:43:36,392 | INFO     | all job control threads have been joined
[2025-06-06 17:44:06] 2025-06-06 21:43:36,457 | INFO     | all data control threads have been joined
[2025-06-06 17:44:06] 2025-06-06 21:43:36,648 | INFO     | [job] retrieve thread has finished
[2025-06-06 17:44:06] 2025-06-06 21:43:36,648 | INFO     | [job] queue monitor thread has finished
[2025-06-06 17:44:06] 2025-06-06 21:43:36,684 | INFO     | [payload] validate_post thread has finished
[2025-06-06 17:44:06] 2025-06-06 21:43:36,747 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 17:44:06] 2025-06-06 21:43:36,825 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 17:44:06] 2025-06-06 21:43:36,882 | INFO     | [payload] control thread has finished
[2025-06-06 17:44:06] 2025-06-06 21:43:36,927 | INFO     | [payload] failed_post thread has finished
[2025-06-06 17:44:06] 2025-06-06 21:43:37,083 | INFO     | [job] validate thread has finished
[2025-06-06 17:44:06] 2025-06-06 21:43:37,231 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 17:44:06] 2025-06-06 21:43:37,368 | INFO     | [job] job monitor thread has finished
[2025-06-06 17:44:06] 2025-06-06 21:43:37,398 | INFO     | [job] control thread has finished
[2025-06-06 17:44:06] 2025-06-06 21:43:37,402 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 17:44:06] 2025-06-06 21:43:37,414 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 17:44:06] 2025-06-06 21:43:37,463 | INFO     | [data] control thread has finished
[2025-06-06 17:44:06] 2025-06-06 21:43:37,664 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 17:44:06] 2025-06-06 21:43:37,710 | INFO     | [data] copytool_in thread has finished
[2025-06-06 17:44:06] 2025-06-06 21:43:38,753 | INFO     | [data] copytool_out thread has finished
[2025-06-06 17:44:06] 2025-06-06 21:43:40,831 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 17:44:06] 2025-06-06 21:43:42,764 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140575319037760)>', '<ExcThread(monitor, started 140574136985344)>']
[2025-06-06 17:44:06] 2025-06-06 21:43:47,790 | INFO     | all workflow threads have been joined
[2025-06-06 17:44:06] 2025-06-06 21:43:47,790 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 17:44:06] 2025-06-06 21:43:47,790 | INFO     | traces error code: 0
[2025-06-06 17:44:06] 2025-06-06 21:43:47,791 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 17:44:06] 2025-06-06 21:44:06,344 | INFO     | PID=6338 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-06 17:44:06] 2025-06-06 21:44:06,345 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 17:44:06] 2025-06-06 21:44:06,345 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 17:44:06] 2025-06-06 21:44:06,345 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 17:44:06] 2025-06-06 21:44:06,345 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 17:44:06] 2025-06-06 21:44:06,345 | CRITICAL | thread 'MainThread' is not alive
[2025-06-06 17:44:06] 2025-06-06 21:44:06,345 | INFO     | [monitor] control thread has ended
[2025-06-06 17:44:06] 2025-06-06 21:44:06,440 [wrapper] ==== pilot stdout END ====
[2025-06-06 17:44:06] 2025-06-06 21:44:06,444 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 17:44:06] 2025-06-06 21:44:06,448 [wrapper] pilotpid: 6338
[2025-06-06 17:44:06] 2025-06-06 21:44:06,452 [wrapper] Pilot exit status: 0
[2025-06-06 17:44:06] 2025-06-06 21:44:06,467 [wrapper] pandaids: 6682577428
[2025-06-06 17:44:06] 2025-06-06 21:44:06,508 [wrapper] cleanup supervisor_pilot 19964 6339
[2025-06-06 17:44:06] 2025-06-06 21:44:06,512 [wrapper] Test setup, not cleaning
[2025-06-06 17:44:06] 2025-06-06 21:44:06,516 [wrapper] apfmon messages muted
[2025-06-06 17:44:06] 2025-06-06 21:44:06,520 [wrapper] ==== wrapper stdout END ====
[2025-06-06 17:44:06] 2025-06-06 21:44:06,524 [wrapper] ==== wrapper stderr END ====
[2025-06-06 17:44:06]  *** Error codes and diagnostics ***
[2025-06-06 17:44:06]     "exeErrorCode": 0,
[2025-06-06 17:44:06]     "exeErrorDiag": "",
[2025-06-06 17:44:06]     "pilotErrorCode": 0,
[2025-06-06 17:44:06]     "pilotErrorDiag": "",
[2025-06-06 17:44:06]  *** Listing of results directory ***
[2025-06-06 17:44:06] total 393940
[2025-06-06 17:44:06] -rw-r--r-- 1 boincer umatlas    529402 Jun  6 16:25 pilot3.tar.gz
[2025-06-06 17:44:06] -rwx------ 1 boincer umatlas     37140 Jun  6 16:38 runpilot2-wrapper.sh
[2025-06-06 17:44:06] -rw-r--r-- 1 boincer umatlas      5112 Jun  6 16:38 queuedata.json
[2025-06-06 17:44:06] -rw-r--r-- 1 boincer umatlas       100 Jun  6 16:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 17:44:06] -rwxr-xr-x 1 boincer umatlas      7986 Jun  6 16:38 run_atlas
[2025-06-06 17:44:06] -rw-r--r-- 1 boincer umatlas       105 Jun  6 16:38 job.xml
[2025-06-06 17:44:06] -rw-r--r-- 2 boincer umatlas 214802496 Jun  6 16:39 EVNT.45006593._002130.pool.root.1
[2025-06-06 17:44:06] -rw-r--r-- 2 boincer umatlas     15095 Jun  6 16:39 start_atlas.sh
[2025-06-06 17:44:06] drwxrwx--x 2 boincer umatlas      4096 Jun  6 16:39 shared
[2025-06-06 17:44:06] -rw-r--r-- 2 boincer umatlas    541915 Jun  6 16:39 input.tar.gz
[2025-06-06 17:44:06] -rw-r--r-- 1 boincer umatlas         0 Jun  6 16:39 boinc_lockfile
[2025-06-06 17:44:06] -rw-r--r-- 1 boincer umatlas      2524 Jun  6 16:39 pandaJob.out
[2025-06-06 17:44:06] -rw------- 1 boincer umatlas    985756 Jun  6 16:39 agis_schedconf.cvmfs.json
[2025-06-06 17:44:06] -rw------- 1 boincer umatlas   1598969 Jun  6 16:39 agis_ddmendpoints.agis.ALL.json
[2025-06-06 17:44:06] drwx------ 4 boincer umatlas      4096 Jun  6 16:39 pilot3
[2025-06-06 17:44:06] -rw-r--r-- 1 boincer umatlas      5867 Jun  6 17:39 init_data.xml
[2025-06-06 17:44:06] -rw-r--r-- 1 boincer umatlas       530 Jun  6 17:42 boinc_task_state.xml
[2025-06-06 17:44:06] -rw------- 1 boincer umatlas 183239884 Jun  6 17:42 HITS.45006595._057173.pool.root.1
[2025-06-06 17:44:06] -rw------- 1 boincer umatlas      1045 Jun  6 17:43 memory_monitor_summary.json
[2025-06-06 17:44:06] -rw------- 1 boincer umatlas    350807 Jun  6 17:43 log.45006595._057173.job.log.tgz.1
[2025-06-06 17:44:06] -rw------- 1 boincer umatlas      7779 Jun  6 17:43 heartbeat.json
[2025-06-06 17:44:06] -rw-r--r-- 1 boincer umatlas      8192 Jun  6 17:43 boinc_mmap_file
[2025-06-06 17:44:06] -rw-r--r-- 1 boincer umatlas        27 Jun  6 17:43 wrapper_checkpoint.txt
[2025-06-06 17:44:06] -rw------- 1 boincer umatlas       814 Jun  6 17:44 pilotlog.txt
[2025-06-06 17:44:06] -rw------- 1 boincer umatlas        95 Jun  6 17:44 pilot_heartbeat.json
[2025-06-06 17:44:06] -rw------- 1 boincer umatlas    378466 Jun  6 17:44 log.45006595._057173.job.log.1
[2025-06-06 17:44:06] -rw------- 1 boincer umatlas       357 Jun  6 17:44 output.list
[2025-06-06 17:44:06] -rw-r--r-- 1 boincer umatlas       620 Jun  6 17:44 runtime_log
[2025-06-06 17:44:06] -rw------- 1 boincer umatlas    747520 Jun  6 17:44 result.tar.gz
[2025-06-06 17:44:06] -rw------- 1 boincer umatlas       658 Jun  6 17:44 1QiLDmn0sh7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmX7nKDm6BDtYn.diag
[2025-06-06 17:44:06] -rw-r--r-- 1 boincer umatlas      8657 Jun  6 17:44 runtime_log.err
[2025-06-06 17:44:06] -rw-r--r-- 1 boincer umatlas     21724 Jun  6 17:44 stderr.txt
[2025-06-06 17:44:06] HITS file was successfully produced:
[2025-06-06 17:44:06] -rw------- 1 boincer umatlas 183239884 Jun  6 17:42 shared/HITS.pool.root.1
[2025-06-06 17:44:06]  *** Contents of shared directory: ***
[2025-06-06 17:44:06] total 390004
[2025-06-06 17:44:06] -rw-r--r-- 2 boincer umatlas 214802496 Jun  6 16:39 ATLAS.root_0
[2025-06-06 17:44:06] -rw-r--r-- 2 boincer umatlas     15095 Jun  6 16:39 start_atlas.sh
[2025-06-06 17:44:06] -rw-r--r-- 2 boincer umatlas    541915 Jun  6 16:39 input.tar.gz
[2025-06-06 17:44:06] -rw------- 1 boincer umatlas 183239884 Jun  6 17:42 HITS.pool.root.1
[2025-06-06 17:44:06] -rw------- 1 boincer umatlas    747520 Jun  6 17:44 result.tar.gz
17:44:07 (2617): run_atlas exited; CPU time 41287.513402
17:44:07 (2617): called boinc_finish(0)

</stderr_txt>
]]>

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