Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:07:39 (3212915): wrapper (7.7.26015): starting
16:07:39 (3212915): wrapper: running run_atlas (--nthreads 8)
[2025-06-06 16:07:39] Arguments: --nthreads 8
[2025-06-06 16:07:39] Threads: 8
[2025-06-06 16:07:39] Checking for CVMFS
[2025-06-06 16:07:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 16:07:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 16:07:40] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 16:07:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 16:07:41] 2.12.6.0 7995 4677 220740 146873 1 717 22781838 32935936 19279 16776704 0 26065807 99.879 6065636 20730 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-06 16:07:41] CVMFS is ok
[2025-06-06 16:07:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 16:07:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 16:07:41] Further information can be found at the LHC@home message board.
[2025-06-06 16:07:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 16:07:41] Checking for apptainer binary...
[2025-06-06 16:07:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 16:07:41] Running /usr/bin/apptainer --version
[2025-06-06 16:07:41] apptainer version 1.4.1-1.el9
[2025-06-06 16:07:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 16:07:41] c6-8-25-2.aglt2.org
[2025-06-06 16:07:41] apptainer works
[2025-06-06 16:07:42] Set ATHENA_PROC_NUMBER=8
[2025-06-06 16:07:42] Set ATHENA_CORE_NUMBER=8
[2025-06-06 16:07:42] Starting ATLAS job with PandaID=6678212672
[2025-06-06 16:07:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 18:47:06]  *** The last 200 lines of the pilot log: ***
[2025-06-06 18:47:06] 2025-06-06 22:46:50,175 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-06 18:47:06] 2025-06-06 22:46:50,176 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6678212672/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 18:47:06] 2025-06-06 22:46:50,176 | INFO     | extracted standard info from prmon json
[2025-06-06 18:47:06] 2025-06-06 22:46:50,177 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 18:47:06] 2025-06-06 22:46:50,177 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 18:47:06] 2025-06-06 22:46:50,177 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 18:47:06] 2025-06-06 22:46:50,177 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 18:47:06] 2025-06-06 22:46:50,181 | INFO     | fitting pss+swap vs Time
[2025-06-06 18:47:06] 2025-06-06 22:46:50,181 | INFO     | sum of square deviations: 1154632663.419356
[2025-06-06 18:47:06] 2025-06-06 22:46:50,182 | INFO     | sum of deviations: 23158237413.93549
[2025-06-06 18:47:06] 2025-06-06 22:46:50,182 | INFO     | mean x: 1749245298.1290324
[2025-06-06 18:47:06] 2025-06-06 22:46:50,182 | INFO     | mean y: 2069095.5032258064
[2025-06-06 18:47:06] 2025-06-06 22:46:50,182 | INFO     | -- intersect: -35082195530.544075
[2025-06-06 18:47:06] 2025-06-06 22:46:50,182 | INFO     | intersect: -35082195530.544075
[2025-06-06 18:47:06] 2025-06-06 22:46:50,183 | INFO     | chi2: 2.458072059980716
[2025-06-06 18:47:06] 2025-06-06 22:46:50,183 | INFO     | sum of square deviations: 1046459990.8333324
[2025-06-06 18:47:06] 2025-06-06 22:46:50,184 | INFO     | sum of deviations: 29804125214.400024
[2025-06-06 18:47:06] 2025-06-06 22:46:50,184 | INFO     | mean x: 1749245145.6333334
[2025-06-06 18:47:06] 2025-06-06 22:46:50,184 | INFO     | mean y: 2078159.08
[2025-06-06 18:47:06] 2025-06-06 22:46:50,184 | INFO     | -- intersect: -49818002692.382454
[2025-06-06 18:47:06] 2025-06-06 22:46:50,184 | INFO     | intersect: -49818002692.382454
[2025-06-06 18:47:06] 2025-06-06 22:46:50,184 | INFO     | chi2: 1.807895696141024
[2025-06-06 18:47:06] 2025-06-06 22:46:50,184 | INFO     | current chi2=1.807895696141024 (change=26.450663283028113 %)
[2025-06-06 18:47:06] 2025-06-06 22:46:50,185 | INFO     | sum of square deviations: 945264193.2413765
[2025-06-06 18:47:06] 2025-06-06 22:46:50,186 | INFO     | sum of deviations: 27789487684.344864
[2025-06-06 18:47:06] 2025-06-06 22:46:50,186 | INFO     | mean x: 1749244993.137931
[2025-06-06 18:47:06] 2025-06-06 22:46:50,186 | INFO     | mean y: 2075117.4827586208
[2025-06-06 18:47:06] 2025-06-06 22:46:50,186 | INFO     | -- intersect: -51423359741.12461
[2025-06-06 18:47:06] 2025-06-06 22:46:50,186 | INFO     | intersect: -51423359741.12461
[2025-06-06 18:47:06] 2025-06-06 22:46:50,186 | INFO     | chi2: 1.809400560053728
[2025-06-06 18:47:06] 2025-06-06 22:46:50,186 | INFO     | current chi2=1.809400560053728 (change=-0.08323842553063994 %)
[2025-06-06 18:47:06] 2025-06-06 22:46:50,186 | INFO     | right removable region: 144
[2025-06-06 18:47:06] 2025-06-06 22:46:50,187 | INFO     | sum of square deviations: 1046447790.8333324
[2025-06-06 18:47:06] 2025-06-06 22:46:50,187 | INFO     | sum of deviations: -1496285228.333334
[2025-06-06 18:47:06] 2025-06-06 22:46:50,188 | INFO     | mean x: 1749245450.6333334
[2025-06-06 18:47:06] 2025-06-06 22:46:50,188 | INFO     | mean y: 2103509.6666666665
[2025-06-06 18:47:06] 2025-06-06 22:46:50,188 | INFO     | -- intersect: 2503298649.4907146
[2025-06-06 18:47:06] 2025-06-06 22:46:50,188 | INFO     | intersect: 2503298649.4907146
[2025-06-06 18:47:06] 2025-06-06 22:46:50,188 | INFO     | chi2: 0.7455195418939015
[2025-06-06 18:47:06] 2025-06-06 22:46:50,188 | INFO     | current chi2=0.7455195418939015 (change=69.67055791278347 %)
[2025-06-06 18:47:06] 2025-06-06 22:46:50,188 | INFO     | sum of square deviations: 945249186.5103433
[2025-06-06 18:47:06] 2025-06-06 22:46:50,189 | INFO     | sum of deviations: -2125079165.1517239
[2025-06-06 18:47:06] 2025-06-06 22:46:50,189 | INFO     | mean x: 1749245603.1310344
[2025-06-06 18:47:06] 2025-06-06 22:46:50,189 | INFO     | mean y: 2104435.744827586
[2025-06-06 18:47:06] 2025-06-06 22:46:50,189 | INFO     | -- intersect: 3934702780.1776223
[2025-06-06 18:47:06] 2025-06-06 22:46:50,190 | INFO     | intersect: 3934702780.1776223
[2025-06-06 18:47:06] 2025-06-06 22:46:50,190 | INFO     | chi2: 0.7355643308334306
[2025-06-06 18:47:06] 2025-06-06 22:46:50,190 | INFO     | current chi2=0.7355643308334306 (change=1.3353387136145103 %)
[2025-06-06 18:47:06] 2025-06-06 22:46:50,190 | INFO     | left removable region: 20
[2025-06-06 18:47:06] 2025-06-06 22:46:50,190 | INFO     | sum of square deviations: 591149004.3870983
[2025-06-06 18:47:06] 2025-06-06 22:46:50,191 | INFO     | sum of deviations: 3188694731.161291
[2025-06-06 18:47:06] 2025-06-06 22:46:50,191 | INFO     | mean x: 1749245572.6451614
[2025-06-06 18:47:06] 2025-06-06 22:46:50,191 | INFO     | mean y: 2113887.935483871
[2025-06-06 18:47:06] 2025-06-06 22:46:50,191 | INFO     | -- intersect: -9433426220.575567
[2025-06-06 18:47:06] 2025-06-06 22:46:50,191 | INFO     | intersect: -9433426220.575567
[2025-06-06 18:47:06] 2025-06-06 22:46:50,191 | INFO     | chi2: 0.05358091042735829
[2025-06-06 18:47:06] 2025-06-06 22:46:50,192 | INFO     | -- intersect: -9433426220.575567
[2025-06-06 18:47:06] 2025-06-06 22:46:50,192 | INFO     | current memory leak: 5.39 B/s (using 124 data points, chi2=0.05)
[2025-06-06 18:47:06] 2025-06-06 22:46:50,192 | INFO     | ..............................
[2025-06-06 18:47:06] 2025-06-06 22:46:50,192 | INFO     | . Timing measurements:
[2025-06-06 18:47:06] 2025-06-06 22:46:50,193 | INFO     | . get job = 0 s
[2025-06-06 18:47:06] 2025-06-06 22:46:50,193 | INFO     | . initial setup = 4 s
[2025-06-06 18:47:06] 2025-06-06 22:46:50,193 | INFO     | . payload setup = 32 s
[2025-06-06 18:47:06] 2025-06-06 22:46:50,193 | INFO     | . stage-in = 0 s
[2025-06-06 18:47:06] 2025-06-06 22:46:50,193 | INFO     | . payload execution = 9420 s
[2025-06-06 18:47:06] 2025-06-06 22:46:50,193 | INFO     | . stage-out = 0 s
[2025-06-06 18:47:06] 2025-06-06 22:46:50,193 | INFO     | . log creation = 0 s
[2025-06-06 18:47:06] 2025-06-06 22:46:50,193 | INFO     | ..............................
[2025-06-06 18:47:06] 2025-06-06 22:46:50,321 | INFO     | 
[2025-06-06 18:47:06] 2025-06-06 22:46:50,321 | INFO     | job summary report
[2025-06-06 18:47:06] 2025-06-06 22:46:50,321 | INFO     | --------------------------------------------------
[2025-06-06 18:47:06] 2025-06-06 22:46:50,321 | INFO     | PanDA job id: 6678212672
[2025-06-06 18:47:06] 2025-06-06 22:46:50,321 | INFO     | task id: 45006595
[2025-06-06 18:47:06] 2025-06-06 22:46:50,321 | INFO     | errors: (none)
[2025-06-06 18:47:06] 2025-06-06 22:46:50,321 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 18:47:06] 2025-06-06 22:46:50,321 | INFO     | pilot state: finished 
[2025-06-06 18:47:06] 2025-06-06 22:46:50,321 | INFO     | transexitcode: 0
[2025-06-06 18:47:06] 2025-06-06 22:46:50,321 | INFO     | exeerrorcode: 0
[2025-06-06 18:47:06] 2025-06-06 22:46:50,321 | INFO     | exeerrordiag: 
[2025-06-06 18:47:06] 2025-06-06 22:46:50,322 | INFO     | exitcode: 0
[2025-06-06 18:47:06] 2025-06-06 22:46:50,322 | INFO     | exitmsg: OK
[2025-06-06 18:47:06] 2025-06-06 22:46:50,322 | INFO     | cpuconsumptiontime: 37230 s
[2025-06-06 18:47:06] 2025-06-06 22:46:50,322 | INFO     | nevents: 400
[2025-06-06 18:47:06] 2025-06-06 22:46:50,322 | INFO     | neventsw: 0
[2025-06-06 18:47:06] 2025-06-06 22:46:50,322 | INFO     | pid: 3238250
[2025-06-06 18:47:06] 2025-06-06 22:46:50,322 | INFO     | pgrp: 3238250
[2025-06-06 18:47:06] 2025-06-06 22:46:50,322 | INFO     | corecount: 8
[2025-06-06 18:47:06] 2025-06-06 22:46:50,322 | INFO     | event service: False
[2025-06-06 18:47:06] 2025-06-06 22:46:50,322 | INFO     | sizes: {0: 2397340, 1: 2397340, 12: 2397368, 21: 2397602, 22: 2397630, 9457: 2425977, 9458: 2434918, 9461: 2434974, 9466: 2435144}
[2025-06-06 18:47:06] 2025-06-06 22:46:50,322 | INFO     | --------------------------------------------------
[2025-06-06 18:47:06] 2025-06-06 22:46:50,322 | INFO     | 
[2025-06-06 18:47:06] 2025-06-06 22:46:50,322 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-06-06 18:47:06] 2025-06-06 22:46:50,344 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 18:47:06] 2025-06-06 22:46:50,345 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 18:47:06] 2025-06-06 22:46:50,345 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 18:47:06] 2025-06-06 22:46:50,345 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 18:47:06] 2025-06-06 22:46:50,345 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 18:47:06] 2025-06-06 22:46:50,345 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 18:47:06] 2025-06-06 22:46:50,345 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 18:47:06] 2025-06-06 22:46:50,345 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 18:47:06] 2025-06-06 22:46:50,345 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 18:47:06] 2025-06-06 22:46:50,345 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 18:47:06] 2025-06-06 22:46:50,345 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 18:47:06] 2025-06-06 22:46:50,346 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 18:47:06] 2025-06-06 22:46:50,346 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 18:47:06] 2025-06-06 22:46:50,346 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 18:47:06] 2025-06-06 22:46:50,346 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 18:47:06] 2025-06-06 22:46:50,346 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 18:47:06] 2025-06-06 22:46:50,346 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 18:47:06] 2025-06-06 22:46:50,346 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 18:47:06] 2025-06-06 22:46:50,346 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 18:47:06] 2025-06-06 22:46:50,346 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 18:47:06] 2025-06-06 22:46:50,346 | INFO     | job 6678212672 has completed (purged errors)
[2025-06-06 18:47:06] 2025-06-06 22:46:50,346 | INFO     | overall cleanup function is called
[2025-06-06 18:47:06] 2025-06-06 22:46:51,354 | INFO     | --- collectZombieJob: --- 10, [3238250]
[2025-06-06 18:47:06] 2025-06-06 22:46:51,355 | INFO     | zombie collector waiting for pid 3238250
[2025-06-06 18:47:06] 2025-06-06 22:46:51,355 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 18:47:06] 2025-06-06 22:46:51,355 | INFO     | collected zombie processes
[2025-06-06 18:47:06] 2025-06-06 22:46:51,355 | INFO     | will attempt to kill all subprocesses of pid=3238250
[2025-06-06 18:47:06] 2025-06-06 22:46:51,713 | INFO     | process IDs to be killed: [3238250] (in reverse order)
[2025-06-06 18:47:06] 2025-06-06 22:46:51,819 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 18:47:06] 2025-06-06 22:46:51,821 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 18:47:06] 2025-06-06 22:46:51,835 | INFO     | did not find any defunct processes belonging to 3238250
[2025-06-06 18:47:06] 2025-06-06 22:46:51,849 | INFO     | did not find any defunct processes belonging to 3238250
[2025-06-06 18:47:06] 2025-06-06 22:46:51,850 | INFO     | ready for new job
[2025-06-06 18:47:06] 2025-06-06 22:46:51,850 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 18:47:06] 2025-06-06 22:46:51,852 | INFO     | **************************************
[2025-06-06 18:47:06] 2025-06-06 22:46:51,852 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 18:47:06] 2025-06-06 22:46:51,852 | INFO     | **************************************
[2025-06-06 18:47:06] 2025-06-06 22:46:51,852 | INFO     | 
[2025-06-06 18:47:06] 2025-06-06 22:46:51,869 | INFO     | architecture information:
[2025-06-06 18:47:06] 2025-06-06 22:46:51,870 | INFO     | executing command: cat /etc/os-release
[2025-06-06 18:47:06] 2025-06-06 22:46:51,890 | INFO     | cat /etc/os-release:
[2025-06-06 18:47:06] NAME="CentOS Linux"
[2025-06-06 18:47:06] VERSION="7 (Core)"
[2025-06-06 18:47:06] ID="centos"
[2025-06-06 18:47:06] ID_LIKE="rhel fedora"
[2025-06-06 18:47:06] VERSION_ID="7"
[2025-06-06 18:47:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 18:47:06] ANSI_COLOR="0;31"
[2025-06-06 18:47:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 18:47:06] HOME_URL="https://www.centos.org/"
[2025-06-06 18:47:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 18:47:06] 
[2025-06-06 18:47:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 18:47:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 18:47:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 18:47:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 18:47:06] 
[2025-06-06 18:47:06] 2025-06-06 22:46:51,890 | INFO     | **************************************
[2025-06-06 18:47:06] 2025-06-06 22:46:52,393 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-06-06 18:47:06] 2025-06-06 22:46:52,413 | INFO     | sufficient remaining disk space (75404148736 B)
[2025-06-06 18:47:06] 2025-06-06 22:46:52,413 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 18:47:06] 2025-06-06 22:46:52,413 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 18:47:06] 2025-06-06 22:46:52,413 | INFO     | update_server=False
[2025-06-06 18:47:06] 2025-06-06 22:46:52,413 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 18:47:06] 2025-06-06 22:46:52,414 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 18:47:06] 2025-06-06 22:46:52,414 | INFO     | aborting loop
[2025-06-06 18:47:06] 2025-06-06 22:46:52,733 | INFO     | all job control threads have been joined
[2025-06-06 18:47:06] 2025-06-06 22:46:52,832 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 18:47:06] 2025-06-06 22:46:52,950 | INFO     | all data control threads have been joined
[2025-06-06 18:47:06] 2025-06-06 22:46:53,084 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 18:47:06] 2025-06-06 22:46:53,084 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 18:47:06] 2025-06-06 22:46:53,084 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 18:47:06] 2025-06-06 22:46:53,351 | INFO     | all payload control threads have been joined
[2025-06-06 18:47:06] 2025-06-06 22:46:53,419 | INFO     | [job] retrieve thread has finished
[2025-06-06 18:47:06] 2025-06-06 22:46:53,419 | INFO     | [job] job monitor thread has finished
[2025-06-06 18:47:06] 2025-06-06 22:46:53,424 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 18:47:06] 2025-06-06 22:46:53,520 | INFO     | [payload] validate_post thread has finished
[2025-06-06 18:47:06] 2025-06-06 22:46:53,738 | INFO     | [job] control thread has finished
[2025-06-06 18:47:06] 2025-06-06 22:46:53,751 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 18:47:06] 2025-06-06 22:46:53,957 | INFO     | [data] control thread has finished
[2025-06-06 18:47:06] 2025-06-06 22:46:54,329 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 18:47:06] 2025-06-06 22:46:54,335 | INFO     | [payload] failed_post thread has finished
[2025-06-06 18:47:06] 2025-06-06 22:46:54,356 | INFO     | [payload] control thread has finished
[2025-06-06 18:47:06] 2025-06-06 22:46:54,367 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 18:47:06] 2025-06-06 22:46:54,827 | INFO     | [job] validate thread has finished
[2025-06-06 18:47:06] 2025-06-06 22:46:54,828 | INFO     | [data] copytool_in thread has finished
[2025-06-06 18:47:06] 2025-06-06 22:46:54,838 | INFO     | [data] copytool_out thread has finished
[2025-06-06 18:47:06] 2025-06-06 22:46:55,325 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 18:47:06] 2025-06-06 22:46:55,332 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 18:47:06] 2025-06-06 22:46:56,337 | INFO     | [job] queue monitor thread has finished
[2025-06-06 18:47:06] 2025-06-06 22:46:59,333 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 18:47:06] 2025-06-06 22:47:01,263 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140146101028672)>', '<ExcThread(monitor, started 140145747535616)>']
[2025-06-06 18:47:06] 2025-06-06 22:47:02,134 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 18:47:06] 2025-06-06 22:47:02,135 | INFO     | [monitor] control thread has ended
[2025-06-06 18:47:06] 2025-06-06 22:47:06,288 | INFO     | all workflow threads have been joined
[2025-06-06 18:47:06] 2025-06-06 22:47:06,289 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 18:47:06] 2025-06-06 22:47:06,289 | INFO     | traces error code: 0
[2025-06-06 18:47:06] 2025-06-06 22:47:06,290 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 18:47:06] 2025-06-06 22:47:06,455 [wrapper] ==== pilot stdout END ====
[2025-06-06 18:47:06] 2025-06-06 22:47:06,458 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 18:47:06] 2025-06-06 22:47:06,460 [wrapper] pilotpid: 3221667
[2025-06-06 18:47:06] 2025-06-06 22:47:06,462 [wrapper] Pilot exit status: 0
[2025-06-06 18:47:06] 2025-06-06 22:47:06,470 [wrapper] pandaids: 6678212672
[2025-06-06 18:47:06] 2025-06-06 22:47:06,537 [wrapper] cleanup supervisor_pilot 3512930 3221668
[2025-06-06 18:47:06] 2025-06-06 22:47:06,540 [wrapper] Test setup, not cleaning
[2025-06-06 18:47:06] 2025-06-06 22:47:06,543 [wrapper] apfmon messages muted
[2025-06-06 18:47:06] 2025-06-06 22:47:06,545 [wrapper] ==== wrapper stdout END ====
[2025-06-06 18:47:06] 2025-06-06 22:47:06,548 [wrapper] ==== wrapper stderr END ====
[2025-06-06 18:47:06]  *** Error codes and diagnostics ***
[2025-06-06 18:47:06]     "exeErrorCode": 0,
[2025-06-06 18:47:06]     "exeErrorDiag": "",
[2025-06-06 18:47:06]     "pilotErrorCode": 0,
[2025-06-06 18:47:06]     "pilotErrorDiag": "",
[2025-06-06 18:47:06]  *** Listing of results directory ***
[2025-06-06 18:47:06] total 389400
[2025-06-06 18:47:06] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 19:42 pilot3.tar.gz
[2025-06-06 18:47:06] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 19:50 queuedata.json
[2025-06-06 18:47:06] -rwx------. 1 boincer umatlas     37140 Jun  3 19:51 runpilot2-wrapper.sh
[2025-06-06 18:47:06] -rw-r--r--. 1 boincer umatlas       100 Jun  6 16:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 18:47:06] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  6 16:07 run_atlas
[2025-06-06 18:47:06] -rw-r--r--. 1 boincer umatlas       105 Jun  6 16:07 job.xml
[2025-06-06 18:47:06] -rw-r--r--. 2 boincer umatlas 213976228 Jun  6 16:07 EVNT.45006593._001947.pool.root.1
[2025-06-06 18:47:06] -rw-r--r--. 2 boincer umatlas     15093 Jun  6 16:07 start_atlas.sh
[2025-06-06 18:47:06] drwxrwx--x. 2 boincer umatlas      4096 Jun  6 16:07 shared
[2025-06-06 18:47:06] -rw-r--r--. 2 boincer umatlas    508881 Jun  6 16:07 input.tar.gz
[2025-06-06 18:47:06] -rw-r--r--. 1 boincer umatlas         0 Jun  6 16:07 boinc_lockfile
[2025-06-06 18:47:06] -rw-r--r--. 1 boincer umatlas      2524 Jun  6 16:07 pandaJob.out
[2025-06-06 18:47:06] -rw-------. 1 boincer umatlas    985748 Jun  6 16:08 agis_schedconf.cvmfs.json
[2025-06-06 18:47:06] -rw-------. 1 boincer umatlas   1598969 Jun  6 16:08 agis_ddmendpoints.agis.ALL.json
[2025-06-06 18:47:06] drwx------. 4 boincer umatlas      4096 Jun  6 16:08 pilot3
[2025-06-06 18:47:06] -rw-------. 1 boincer umatlas 178621672 Jun  6 18:46 HITS.45006595._048531.pool.root.1
[2025-06-06 18:47:06] -rw-r--r--. 1 boincer umatlas       530 Jun  6 18:46 boinc_task_state.xml
[2025-06-06 18:47:06] -rw-------. 1 boincer umatlas        95 Jun  6 18:46 pilot_heartbeat.json
[2025-06-06 18:47:06] -rw-r--r--. 1 boincer umatlas      6852 Jun  6 18:46 init_data.xml
[2025-06-06 18:47:06] -rw-------. 1 boincer umatlas      1042 Jun  6 18:46 memory_monitor_summary.json
[2025-06-06 18:47:06] -rw-------. 1 boincer umatlas    338098 Jun  6 18:46 log.45006595._048531.job.log.tgz.1
[2025-06-06 18:47:06] -rw-------. 1 boincer umatlas      7723 Jun  6 18:46 heartbeat.json
[2025-06-06 18:47:06] -rw-r--r--. 1 boincer umatlas      8192 Jun  6 18:46 boinc_mmap_file
[2025-06-06 18:47:06] -rw-r--r--. 1 boincer umatlas        27 Jun  6 18:46 wrapper_checkpoint.txt
[2025-06-06 18:47:06] -rw-------. 1 boincer umatlas      4353 Jun  6 18:47 pilotlog.txt
[2025-06-06 18:47:06] -rw-------. 1 boincer umatlas    821030 Jun  6 18:47 log.45006595._048531.job.log.1
[2025-06-06 18:47:06] -rw-------. 1 boincer umatlas       357 Jun  6 18:47 output.list
[2025-06-06 18:47:06] -rw-r--r--. 1 boincer umatlas       620 Jun  6 18:47 runtime_log
[2025-06-06 18:47:06] -rw-------. 1 boincer umatlas   1177600 Jun  6 18:47 result.tar.gz
[2025-06-06 18:47:06] -rw-r--r--. 1 boincer umatlas      8664 Jun  6 18:47 runtime_log.err
[2025-06-06 18:47:06] -rw-------. 1 boincer umatlas       653 Jun  6 18:47 J4uNDmRaqg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgZmKDmZr1oEo.diag
[2025-06-06 18:47:06] -rw-r--r--. 1 boincer umatlas     20905 Jun  6 18:47 stderr.txt
[2025-06-06 18:47:06] HITS file was successfully produced:
[2025-06-06 18:47:06] -rw-------. 1 boincer umatlas 178621672 Jun  6 18:46 shared/HITS.pool.root.1
[2025-06-06 18:47:06]  *** Contents of shared directory: ***
[2025-06-06 18:47:06] total 385072
[2025-06-06 18:47:06] -rw-r--r--. 2 boincer umatlas 213976228 Jun  6 16:07 ATLAS.root_0
[2025-06-06 18:47:06] -rw-r--r--. 2 boincer umatlas     15093 Jun  6 16:07 start_atlas.sh
[2025-06-06 18:47:06] -rw-r--r--. 2 boincer umatlas    508881 Jun  6 16:07 input.tar.gz
[2025-06-06 18:47:06] -rw-------. 1 boincer umatlas 178621672 Jun  6 18:46 HITS.pool.root.1
[2025-06-06 18:47:06] -rw-------. 1 boincer umatlas   1177600 Jun  6 18:47 result.tar.gz
18:47:08 (3212915): run_atlas exited; CPU time 37533.962219
18:47:08 (3212915): called boinc_finish(0)

</stderr_txt>
]]>

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