Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:14:03 (1297959): wrapper (7.7.26015): starting
16:14:03 (1297959): wrapper: running run_atlas (--nthreads 12)
[2025-06-06 16:14:03] Arguments: --nthreads 12
[2025-06-06 16:14:03] Threads: 12
[2025-06-06 16:14:03] Checking for CVMFS
[2025-06-06 16:14:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 16:14:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 16:14:03] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 16:14:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 16:14:04] 2.12.6.0 5653 4166 179700 146873 1 668 21535925 32935937 9583 16776704 0 9558626 99.683 7647619 34952 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-06 16:14:04] CVMFS is ok
[2025-06-06 16:14:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 16:14:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 16:14:04] Further information can be found at the LHC@home message board.
[2025-06-06 16:14:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 16:14:04] Checking for apptainer binary...
[2025-06-06 16:14:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 16:14:04] Running /usr/bin/apptainer --version
[2025-06-06 16:14:04] apptainer version 1.4.1-1.el9
[2025-06-06 16:14:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 16:14:04] c6-1-24-2.aglt2.org
[2025-06-06 16:14:04] apptainer works
[2025-06-06 16:14:04] Set ATHENA_PROC_NUMBER=12
[2025-06-06 16:14:04] Set ATHENA_CORE_NUMBER=12
[2025-06-06 16:14:04] Starting ATLAS job with PandaID=6668531471
[2025-06-06 16:14:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 17:52:24]  *** The last 200 lines of the pilot log: ***
[2025-06-06 17:52:24]  mtime=0
[2025-06-06 17:52:24]  protocol_id=None
[2025-06-06 17:52:24]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 17:52:24]  replicas=None
[2025-06-06 17:52:24]  scope=mc23_13p6TeV
[2025-06-06 17:52:24]  status=None
[2025-06-06 17:52:24]  status_code=0
[2025-06-06 17:52:24]  storage_token=
[2025-06-06 17:52:24]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6668531471/log.44871837._085228.job.log.tgz.1
[2025-06-06 17:52:24]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cd/7a/log.44871837._085228.job.log.tgz.1
[2025-06-06 17:52:24]  workdir=None
[2025-06-06 17:52:24] ]
[2025-06-06 17:52:24] 2025-06-06 21:51:57,727 | INFO     | transferring file log.44871837._085228.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6668531471/log.44871837._085228.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-06 17:52:24] 2025-06-06 21:51:57,727 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6668531471/log.44871837._085228.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._085228.job
[2025-06-06 17:52:24] 2025-06-06 21:51:57,748 | INFO     | adding to output.list: log.44871837._085228.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cd/7a/log.44871837._085228.job.log.tg
[2025-06-06 17:52:24] 2025-06-06 21:51:57,750 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 17:52:24] 2025-06-06 21:51:57,750 | INFO     | summary of transferred files:
[2025-06-06 17:52:24] 2025-06-06 21:51:57,750 | INFO     |  -- lfn=log.44871837._085228.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 17:52:24] 2025-06-06 21:51:57,750 | INFO     | stage-out finished correctly
[2025-06-06 17:52:24] 2025-06-06 21:51:59,282 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 17:52:24] 2025-06-06 21:51:59,618 | INFO     | monitor loop #423: job 0:6668531471 is in state 'finished'
[2025-06-06 17:52:24] 2025-06-06 21:51:59,619 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 17:52:24] 2025-06-06 21:52:00,252 | INFO     | job 6668531471 has state=finished
[2025-06-06 17:52:24] 2025-06-06 21:52:00,252 | INFO     | preparing for final server update for job 6668531471 in state='finished'
[2025-06-06 17:52:24] 2025-06-06 21:52:00,253 | INFO     | this job has now completed (state=finished)
[2025-06-06 17:52:24] 2025-06-06 21:52:00,253 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 17:52:24] 2025-06-06 21:52:00,253 | INFO     | log transfer has been attempted: DONE
[2025-06-06 17:52:24] 2025-06-06 21:52:00,253 | INFO     | job 6668531471 has finished - writing final server update
[2025-06-06 17:52:24] 2025-06-06 21:52:00,253 | INFO     | total number of processed events: 400 (read)
[2025-06-06 17:52:24] 2025-06-06 21:52:00,254 | INFO     | executing command: lscpu
[2025-06-06 17:52:24] 2025-06-06 21:52:00,310 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 17:52:24] 2025-06-06 21:52:02,122 | INFO     | monitor loop #424: job 0:6668531471 is in state 'finished'
[2025-06-06 17:52:24] 2025-06-06 21:52:02,122 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 17:52:24] 2025-06-06 21:52:04,586 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-06 17:52:24] 2025-06-06 21:52:04,591 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2726.7818928571432
[2025-06-06 17:52:24] 2025-06-06 21:52:04,603 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668531471/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 17:52:24] 2025-06-06 21:52:04,604 | INFO     | extracted standard info from prmon json
[2025-06-06 17:52:24] 2025-06-06 21:52:04,605 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 17:52:24] 2025-06-06 21:52:04,605 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 17:52:24] 2025-06-06 21:52:04,605 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 17:52:24] 2025-06-06 21:52:04,605 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 17:52:24] 2025-06-06 21:52:04,608 | INFO     | fitting pss+swap vs Time
[2025-06-06 17:52:24] 2025-06-06 21:52:04,609 | INFO     | sum of square deviations: 218563003.82022443
[2025-06-06 17:52:24] 2025-06-06 21:52:04,609 | INFO     | sum of deviations: -9674297994.303371
[2025-06-06 17:52:24] 2025-06-06 21:52:04,609 | INFO     | mean x: 1749243871.0449438
[2025-06-06 17:52:24] 2025-06-06 21:52:04,609 | INFO     | mean y: 2463513.3258426967
[2025-06-06 17:52:24] 2025-06-06 21:52:04,610 | INFO     | -- intersect: 77429595175.17412
[2025-06-06 17:52:24] 2025-06-06 21:52:04,610 | INFO     | intersect: 77429595175.17412
[2025-06-06 17:52:24] 2025-06-06 21:52:04,610 | INFO     | chi2: 0.06974441779223609
[2025-06-06 17:52:24] 2025-06-06 21:52:04,610 | INFO     | -- intersect: 77429595175.17412
[2025-06-06 17:52:24] 2025-06-06 21:52:04,610 | INFO     | current memory leak: -44.26 B/s (using 89 data points, chi2=0.07)
[2025-06-06 17:52:24] 2025-06-06 21:52:04,611 | INFO     | could have reported an average CPU frequency of 2846 MHz (7 samples)
[2025-06-06 17:52:24] 2025-06-06 21:52:04,611 | INFO     | ..............................
[2025-06-06 17:52:24] 2025-06-06 21:52:04,611 | INFO     | . Timing measurements:
[2025-06-06 17:52:24] 2025-06-06 21:52:04,611 | INFO     | . get job = 0 s
[2025-06-06 17:52:24] 2025-06-06 21:52:04,611 | INFO     | . initial setup = 2 s
[2025-06-06 17:52:24] 2025-06-06 21:52:04,611 | INFO     | . payload setup = 6 s
[2025-06-06 17:52:24] 2025-06-06 21:52:04,611 | INFO     | . stage-in = 0 s
[2025-06-06 17:52:24] 2025-06-06 21:52:04,611 | INFO     | . payload execution = 5835 s
[2025-06-06 17:52:24] 2025-06-06 21:52:04,612 | INFO     | . stage-out = 0 s
[2025-06-06 17:52:24] 2025-06-06 21:52:04,612 | INFO     | . log creation = 0 s
[2025-06-06 17:52:24] 2025-06-06 21:52:04,612 | INFO     | ..............................
[2025-06-06 17:52:24] 2025-06-06 21:52:05,115 | INFO     | 
[2025-06-06 17:52:24] 2025-06-06 21:52:05,116 | INFO     | job summary report
[2025-06-06 17:52:24] 2025-06-06 21:52:05,116 | INFO     | --------------------------------------------------
[2025-06-06 17:52:24] 2025-06-06 21:52:05,116 | INFO     | PanDA job id: 6668531471
[2025-06-06 17:52:24] 2025-06-06 21:52:05,116 | INFO     | task id: 44871837
[2025-06-06 17:52:24] 2025-06-06 21:52:05,116 | INFO     | errors: (none)
[2025-06-06 17:52:24] 2025-06-06 21:52:05,116 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 17:52:24] 2025-06-06 21:52:05,116 | INFO     | pilot state: finished 
[2025-06-06 17:52:24] 2025-06-06 21:52:05,116 | INFO     | transexitcode: 0
[2025-06-06 17:52:24] 2025-06-06 21:52:05,116 | INFO     | exeerrorcode: 0
[2025-06-06 17:52:24] 2025-06-06 21:52:05,116 | INFO     | exeerrordiag: 
[2025-06-06 17:52:24] 2025-06-06 21:52:05,116 | INFO     | exitcode: 0
[2025-06-06 17:52:24] 2025-06-06 21:52:05,116 | INFO     | exitmsg: OK
[2025-06-06 17:52:24] 2025-06-06 21:52:05,117 | INFO     | cpuconsumptiontime: 50311 s
[2025-06-06 17:52:24] 2025-06-06 21:52:05,117 | INFO     | nevents: 400
[2025-06-06 17:52:24] 2025-06-06 21:52:05,117 | INFO     | neventsw: 0
[2025-06-06 17:52:24] 2025-06-06 21:52:05,117 | INFO     | pid: 1307980
[2025-06-06 17:52:24] 2025-06-06 21:52:05,117 | INFO     | pgrp: 1307980
[2025-06-06 17:52:24] 2025-06-06 21:52:05,117 | INFO     | corecount: 12
[2025-06-06 17:52:24] 2025-06-06 21:52:05,117 | INFO     | event service: False
[2025-06-06 17:52:24] 2025-06-06 21:52:05,117 | INFO     | sizes: {0: 2397562, 1: 2397761, 5: 2398023, 11: 2398079, 5846: 2424871, 5848: 2433812, 5849: 2433996, 5855: 2434190}
[2025-06-06 17:52:24] 2025-06-06 21:52:05,117 | INFO     | --------------------------------------------------
[2025-06-06 17:52:24] 2025-06-06 21:52:05,117 | INFO     | 
[2025-06-06 17:52:24] 2025-06-06 21:52:05,117 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-06 17:52:24] 2025-06-06 21:52:05,137 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 17:52:24] 2025-06-06 21:52:05,138 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 17:52:24] 2025-06-06 21:52:05,138 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 17:52:24] 2025-06-06 21:52:05,138 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 17:52:24] 2025-06-06 21:52:05,138 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 17:52:24] 2025-06-06 21:52:05,138 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 17:52:24] 2025-06-06 21:52:05,138 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 17:52:24] 2025-06-06 21:52:05,138 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 17:52:24] 2025-06-06 21:52:05,138 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 17:52:24] 2025-06-06 21:52:05,138 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 17:52:24] 2025-06-06 21:52:05,138 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 17:52:24] 2025-06-06 21:52:05,138 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 17:52:24] 2025-06-06 21:52:05,138 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 17:52:24] 2025-06-06 21:52:05,138 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 17:52:24] 2025-06-06 21:52:05,138 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 17:52:24] 2025-06-06 21:52:05,138 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 17:52:24] 2025-06-06 21:52:05,138 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 17:52:24] 2025-06-06 21:52:05,138 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 17:52:24] 2025-06-06 21:52:05,139 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 17:52:24] 2025-06-06 21:52:05,139 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 17:52:24] 2025-06-06 21:52:05,139 | INFO     | job 6668531471 has completed (purged errors)
[2025-06-06 17:52:24] 2025-06-06 21:52:05,139 | INFO     | overall cleanup function is called
[2025-06-06 17:52:24] 2025-06-06 21:52:06,146 | INFO     | --- collectZombieJob: --- 10, [1307980]
[2025-06-06 17:52:24] 2025-06-06 21:52:06,147 | INFO     | zombie collector waiting for pid 1307980
[2025-06-06 17:52:24] 2025-06-06 21:52:06,147 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 17:52:24] 2025-06-06 21:52:06,147 | INFO     | collected zombie processes
[2025-06-06 17:52:24] 2025-06-06 21:52:06,147 | INFO     | will attempt to kill all subprocesses of pid=1307980
[2025-06-06 17:52:24] 2025-06-06 21:52:06,262 | INFO     | PID=1301536 has CPU usage=10.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-06 17:52:24] 2025-06-06 21:52:06,263 | INFO     | .. there are 8 such processes running
[2025-06-06 17:52:24] 2025-06-06 21:52:06,443 | INFO     | process IDs to be killed: [1307980] (in reverse order)
[2025-06-06 17:52:24] 2025-06-06 21:52:06,523 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 17:52:24] 2025-06-06 21:52:06,523 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 17:52:24] 2025-06-06 21:52:06,535 | INFO     | did not find any defunct processes belonging to 1307980
[2025-06-06 17:52:24] 2025-06-06 21:52:06,546 | INFO     | did not find any defunct processes belonging to 1307980
[2025-06-06 17:52:24] 2025-06-06 21:52:06,547 | INFO     | ready for new job
[2025-06-06 17:52:24] 2025-06-06 21:52:06,547 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 17:52:24] 2025-06-06 21:52:06,551 | INFO     | ***************************************
[2025-06-06 17:52:24] 2025-06-06 21:52:06,551 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-06 17:52:24] 2025-06-06 21:52:06,551 | INFO     | ***************************************
[2025-06-06 17:52:24] 2025-06-06 21:52:06,552 | INFO     | 
[2025-06-06 17:52:24] 2025-06-06 21:52:06,567 | INFO     | architecture information:
[2025-06-06 17:52:24] 2025-06-06 21:52:06,568 | INFO     | executing command: cat /etc/os-release
[2025-06-06 17:52:24] 2025-06-06 21:52:06,585 | INFO     | cat /etc/os-release:
[2025-06-06 17:52:24] NAME="CentOS Linux"
[2025-06-06 17:52:24] VERSION="7 (Core)"
[2025-06-06 17:52:24] ID="centos"
[2025-06-06 17:52:24] ID_LIKE="rhel fedora"
[2025-06-06 17:52:24] VERSION_ID="7"
[2025-06-06 17:52:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 17:52:24] ANSI_COLOR="0;31"
[2025-06-06 17:52:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 17:52:24] HOME_URL="https://www.centos.org/"
[2025-06-06 17:52:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 17:52:24] 
[2025-06-06 17:52:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 17:52:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 17:52:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 17:52:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 17:52:24] 
[2025-06-06 17:52:24] 2025-06-06 21:52:06,585 | INFO     | ***************************************
[2025-06-06 17:52:24] 2025-06-06 21:52:07,088 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-06 17:52:24] 2025-06-06 21:52:07,110 | INFO     | sufficient remaining disk space (76252446720 B)
[2025-06-06 17:52:24] 2025-06-06 21:52:07,110 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 17:52:24] 2025-06-06 21:52:07,111 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 17:52:24] 2025-06-06 21:52:07,111 | INFO     | update_server=False
[2025-06-06 17:52:24] 2025-06-06 21:52:07,111 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 17:52:24] 2025-06-06 21:52:07,111 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 17:52:24] 2025-06-06 21:52:07,112 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 17:52:24] 2025-06-06 21:52:07,112 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 17:52:24] 2025-06-06 21:52:07,112 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 17:52:24] 2025-06-06 21:52:07,133 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-06 17:52:24] 2025-06-06 21:52:07,134 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-06 17:52:24] 2025-06-06 21:52:07,134 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 17:52:24] 2025-06-06 21:52:07,134 | INFO     | will abort loop
[2025-06-06 17:52:24] 2025-06-06 21:52:07,465 | INFO     | all data control threads have been joined
[2025-06-06 17:52:24] 2025-06-06 21:52:07,562 | INFO     | all job control threads have been joined
[2025-06-06 17:52:24] 2025-06-06 21:52:08,116 | INFO     | [job] retrieve thread has finished
[2025-06-06 17:52:24] 2025-06-06 21:52:08,139 | INFO     | [job] job monitor thread has finished
[2025-06-06 17:52:24] 2025-06-06 21:52:08,283 | INFO     | all payload control threads have been joined
[2025-06-06 17:52:24] 2025-06-06 21:52:08,379 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 17:52:24] 2025-06-06 21:52:08,415 | INFO     | [data] copytool_in thread has finished
[2025-06-06 17:52:24] 2025-06-06 21:52:08,469 | INFO     | [data] control thread has finished
[2025-06-06 17:52:24] 2025-06-06 21:52:08,567 | INFO     | [job] control thread has finished
[2025-06-06 17:52:24] 2025-06-06 21:52:08,769 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 17:52:24] 2025-06-06 21:52:08,849 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 17:52:24] 2025-06-06 21:52:09,284 | INFO     | [payload] control thread has finished
[2025-06-06 17:52:24] 2025-06-06 21:52:09,325 | INFO     | [payload] failed_post thread has finished
[2025-06-06 17:52:24] 2025-06-06 21:52:09,350 | INFO     | [job] validate thread has finished
[2025-06-06 17:52:24] 2025-06-06 21:52:09,459 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 17:52:24] 2025-06-06 21:52:09,644 | INFO     | [payload] validate_post thread has finished
[2025-06-06 17:52:24] 2025-06-06 21:52:09,742 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 17:52:24] 2025-06-06 21:52:09,886 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 17:52:24] 2025-06-06 21:52:10,383 | INFO     | [data] copytool_out thread has finished
[2025-06-06 17:52:24] 2025-06-06 21:52:10,748 | INFO     | [job] queue monitor thread has finished
[2025-06-06 17:52:24] 2025-06-06 21:52:13,892 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 17:52:24] 2025-06-06 21:52:17,985 | INFO     | job.realtimelogging is not enabled
[2025-06-06 17:52:24] 2025-06-06 21:52:18,990 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 17:52:24] 2025-06-06 21:52:19,114 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139971569510208)>', '<ExcThread(monitor, started 139970626971392)>']
[2025-06-06 17:52:24] 2025-06-06 21:52:19,171 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 17:52:24] 2025-06-06 21:52:19,172 | INFO     | [monitor] control thread has ended
[2025-06-06 17:52:24] 2025-06-06 21:52:24,139 | INFO     | all workflow threads have been joined
[2025-06-06 17:52:24] 2025-06-06 21:52:24,140 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 17:52:24] 2025-06-06 21:52:24,140 | INFO     | traces error code: 0
[2025-06-06 17:52:24] 2025-06-06 21:52:24,140 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 17:52:24] 2025-06-06 21:52:24,348 [wrapper] ==== pilot stdout END ====
[2025-06-06 17:52:24] 2025-06-06 21:52:24,352 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 17:52:24] 2025-06-06 21:52:24,356 [wrapper] pilotpid: 1301536
[2025-06-06 17:52:24] 2025-06-06 21:52:24,359 [wrapper] Pilot exit status: 0
[2025-06-06 17:52:24] 2025-06-06 21:52:24,371 [wrapper] pandaids: 6668531471
[2025-06-06 17:52:24] 2025-06-06 21:52:24,434 [wrapper] cleanup supervisor_pilot 1485769 1301537
[2025-06-06 17:52:24] 2025-06-06 21:52:24,437 [wrapper] Test setup, not cleaning
[2025-06-06 17:52:24] 2025-06-06 21:52:24,441 [wrapper] apfmon messages muted
[2025-06-06 17:52:24] 2025-06-06 21:52:24,444 [wrapper] ==== wrapper stdout END ====
[2025-06-06 17:52:24] 2025-06-06 21:52:24,448 [wrapper] ==== wrapper stderr END ====
[2025-06-06 17:52:24]  *** Error codes and diagnostics ***
[2025-06-06 17:52:24]     "exeErrorCode": 0,
[2025-06-06 17:52:24]     "exeErrorDiag": "",
[2025-06-06 17:52:24]     "pilotErrorCode": 0,
[2025-06-06 17:52:24]     "pilotErrorDiag": "",
[2025-06-06 17:52:24]  *** Listing of results directory ***
[2025-06-06 17:52:24] total 415392
[2025-06-06 17:52:24] -rw-r--r--. 1 boincer umatlas    529402 Jun  6 15:45 pilot3.tar.gz
[2025-06-06 17:52:24] -rwx------. 1 boincer umatlas     37140 Jun  6 15:53 runpilot2-wrapper.sh
[2025-06-06 17:52:24] -rw-r--r--. 1 boincer umatlas      5112 Jun  6 15:53 queuedata.json
[2025-06-06 17:52:24] -rw-r--r--. 1 boincer umatlas       100 Jun  6 16:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 17:52:24] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  6 16:14 run_atlas
[2025-06-06 17:52:24] -rw-r--r--. 1 boincer umatlas       105 Jun  6 16:14 job.xml
[2025-06-06 17:52:24] -rw-r--r--. 2 boincer umatlas 223962401 Jun  6 16:14 EVNT.44871834._003323.pool.root.1
[2025-06-06 17:52:24] -rw-r--r--. 2 boincer umatlas     15095 Jun  6 16:14 start_atlas.sh
[2025-06-06 17:52:24] drwxrwx--x. 2 boincer umatlas      4096 Jun  6 16:14 shared
[2025-06-06 17:52:24] -rw-r--r--. 2 boincer umatlas    541914 Jun  6 16:14 input.tar.gz
[2025-06-06 17:52:24] -rw-r--r--. 1 boincer umatlas         0 Jun  6 16:14 boinc_lockfile
[2025-06-06 17:52:24] -rw-r--r--. 1 boincer umatlas      2559 Jun  6 16:14 pandaJob.out
[2025-06-06 17:52:24] -rw-------. 1 boincer umatlas    985748 Jun  6 16:14 agis_schedconf.cvmfs.json
[2025-06-06 17:52:24] -rw-------. 1 boincer umatlas   1598969 Jun  6 16:14 agis_ddmendpoints.agis.ALL.json
[2025-06-06 17:52:24] drwx------. 4 boincer umatlas      4096 Jun  6 16:14 pilot3
[2025-06-06 17:52:24] -rw-r--r--. 1 boincer umatlas      6839 Jun  6 17:49 init_data.xml
[2025-06-06 17:52:24] -rw-------. 1 boincer umatlas 195619533 Jun  6 17:51 HITS.44871837._085228.pool.root.1
[2025-06-06 17:52:24] -rw-r--r--. 1 boincer umatlas       529 Jun  6 17:51 boinc_task_state.xml
[2025-06-06 17:52:24] -rw-------. 1 boincer umatlas      1040 Jun  6 17:51 memory_monitor_summary.json
[2025-06-06 17:52:24] -rw-------. 1 boincer umatlas    380215 Jun  6 17:51 log.44871837._085228.job.log.tgz.1
[2025-06-06 17:52:24] -rw-------. 1 boincer umatlas        95 Jun  6 17:51 pilot_heartbeat.json
[2025-06-06 17:52:24] -rw-------. 1 boincer umatlas      7754 Jun  6 17:52 heartbeat.json
[2025-06-06 17:52:24] -rw-r--r--. 1 boincer umatlas      8192 Jun  6 17:52 boinc_mmap_file
[2025-06-06 17:52:24] -rw-r--r--. 1 boincer umatlas        27 Jun  6 17:52 wrapper_checkpoint.txt
[2025-06-06 17:52:24] -rw-------. 1 boincer umatlas      4738 Jun  6 17:52 pilotlog.txt
[2025-06-06 17:52:24] -rw-------. 1 boincer umatlas    560784 Jun  6 17:52 log.44871837._085228.job.log.1
[2025-06-06 17:52:24] -rw-------. 1 boincer umatlas       357 Jun  6 17:52 output.list
[2025-06-06 17:52:24] -rw-r--r--. 1 boincer umatlas       620 Jun  6 17:52 runtime_log
[2025-06-06 17:52:24] -rw-------. 1 boincer umatlas    962560 Jun  6 17:52 result.tar.gz
[2025-06-06 17:52:24] -rw-r--r--. 1 boincer umatlas      8667 Jun  6 17:52 runtime_log.err
[2025-06-06 17:52:24] -rw-------. 1 boincer umatlas       653 Jun  6 17:52 DfVNDmqIsh7n9Rq4apOajLDm4fhM0noT9bVof3QYDmE6aKDme4IQVo.diag
[2025-06-06 17:52:24] -rw-r--r--. 1 boincer umatlas     21740 Jun  6 17:52 stderr.txt
[2025-06-06 17:52:24] HITS file was successfully produced:
[2025-06-06 17:52:24] -rw-------. 1 boincer umatlas 195619533 Jun  6 17:51 shared/HITS.pool.root.1
[2025-06-06 17:52:24]  *** Contents of shared directory: ***
[2025-06-06 17:52:24] total 411248
[2025-06-06 17:52:24] -rw-r--r--. 2 boincer umatlas 223962401 Jun  6 16:14 ATLAS.root_0
[2025-06-06 17:52:24] -rw-r--r--. 2 boincer umatlas     15095 Jun  6 16:14 start_atlas.sh
[2025-06-06 17:52:24] -rw-r--r--. 2 boincer umatlas    541914 Jun  6 16:14 input.tar.gz
[2025-06-06 17:52:24] -rw-------. 1 boincer umatlas 195619533 Jun  6 17:51 HITS.pool.root.1
[2025-06-06 17:52:24] -rw-------. 1 boincer umatlas    962560 Jun  6 17:52 result.tar.gz
17:52:25 (1297959): run_atlas exited; CPU time 50362.857464
17:52:25 (1297959): called boinc_finish(0)

</stderr_txt>
]]>

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