Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:16:41 (17721): wrapper (7.7.26015): starting
15:16:41 (17721): wrapper: running run_atlas (--nthreads 12)
[2025-06-06 15:16:41] Arguments: --nthreads 12
[2025-06-06 15:16:41] Threads: 12
[2025-06-06 15:16:41] Checking for CVMFS
[2025-06-06 15:16:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 15:16:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 15:16:41] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 15:16:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 15:16:42] 2.11.2.0 28623 31594 86612 146873 2 1 20195676 20275200 1 130560 0 14827759 99.983 5771226 7093 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-06 15:16:42] CVMFS is ok
[2025-06-06 15:16:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 15:16:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 15:16:42] Further information can be found at the LHC@home message board.
[2025-06-06 15:16:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 15:16:42] Checking for apptainer binary...
[2025-06-06 15:16:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 15:16:42] Running /usr/bin/apptainer --version
[2025-06-06 15:16:42] apptainer version 1.3.2-1.el7
[2025-06-06 15:16:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 15:16:43] c-205-20.aglt2.org
[2025-06-06 15:16:43] apptainer works
[2025-06-06 15:16:43] Set ATHENA_PROC_NUMBER=12
[2025-06-06 15:16:43] Set ATHENA_CORE_NUMBER=12
[2025-06-06 15:16:43] Starting ATLAS job with PandaID=6682504362
[2025-06-06 15:16:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 16:53:49]  *** The last 200 lines of the pilot log: ***
[2025-06-06 16:53:49]  guid=74fae20e-7a75-4cf1-b38a-5739df36f8f9
[2025-06-06 16:53:49]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-06 16:53:49]  is_altstaged=None
[2025-06-06 16:53:49]  is_tar=False
[2025-06-06 16:53:49]  lfn=log.44871837._102351.job.log.tgz.1
[2025-06-06 16:53:49]  mtime=0
[2025-06-06 16:53:49]  protocol_id=None
[2025-06-06 16:53:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 16:53:49]  replicas=None
[2025-06-06 16:53:49]  scope=mc23_13p6TeV
[2025-06-06 16:53:49]  status=None
[2025-06-06 16:53:49]  status_code=0
[2025-06-06 16:53:49]  storage_token=
[2025-06-06 16:53:49]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6682504362/log.44871837._102351.job.log.tgz.1
[2025-06-06 16:53:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3f/cf/log.44871837._102351.job.log.tgz.1
[2025-06-06 16:53:49]  workdir=None
[2025-06-06 16:53:49] ]
[2025-06-06 16:53:49] 2025-06-06 20:53:12,395 | INFO     | transferring file log.44871837._102351.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6682504362/log.44871837._102351.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-06 16:53:49] 2025-06-06 20:53:12,395 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6682504362/log.44871837._102351.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._102351.job
[2025-06-06 16:53:49] 2025-06-06 20:53:12,419 | INFO     | adding to output.list: log.44871837._102351.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3f/cf/log.44871837._102351.job.log.tg
[2025-06-06 16:53:49] 2025-06-06 20:53:12,420 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 16:53:49] 2025-06-06 20:53:12,420 | INFO     | summary of transferred files:
[2025-06-06 16:53:49] 2025-06-06 20:53:12,420 | INFO     |  -- lfn=log.44871837._102351.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 16:53:49] 2025-06-06 20:53:12,420 | INFO     | stage-out finished correctly
[2025-06-06 16:53:49] 2025-06-06 20:53:12,605 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 16:53:49] 2025-06-06 20:53:12,687 | INFO     | job 6682504362 has state=finished
[2025-06-06 16:53:49] 2025-06-06 20:53:12,687 | INFO     | preparing for final server update for job 6682504362 in state='finished'
[2025-06-06 16:53:49] 2025-06-06 20:53:12,688 | INFO     | this job has now completed (state=finished)
[2025-06-06 16:53:49] 2025-06-06 20:53:12,688 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 16:53:49] 2025-06-06 20:53:12,688 | INFO     | log transfer has been attempted: DONE
[2025-06-06 16:53:49] 2025-06-06 20:53:12,688 | INFO     | job 6682504362 has finished - writing final server update
[2025-06-06 16:53:49] 2025-06-06 20:53:12,689 | INFO     | total number of processed events: 400 (read)
[2025-06-06 16:53:49] 2025-06-06 20:53:12,690 | INFO     | executing command: lscpu
[2025-06-06 16:53:49] 2025-06-06 20:53:12,714 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 16:53:49] 2025-06-06 20:53:13,223 | INFO     | monitor loop #432: job 0:6682504362 is in state 'finished'
[2025-06-06 16:53:49] 2025-06-06 20:53:13,223 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 16:53:49] 2025-06-06 20:53:15,726 | INFO     | monitor loop #433: job 0:6682504362 is in state 'finished'
[2025-06-06 16:53:49] 2025-06-06 20:53:15,726 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 16:53:49] 2025-06-06 20:53:17,320 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-06 16:53:49] 2025-06-06 20:53:17,324 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-06-06 16:53:49] 2025-06-06 20:53:17,327 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6682504362/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 16:53:49] 2025-06-06 20:53:17,328 | INFO     | extracted standard info from prmon json
[2025-06-06 16:53:49] 2025-06-06 20:53:17,328 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 16:53:49] 2025-06-06 20:53:17,328 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 16:53:49] 2025-06-06 20:53:17,329 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 16:53:49] 2025-06-06 20:53:17,329 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 16:53:49] 2025-06-06 20:53:17,331 | INFO     | fitting pss+swap vs Time
[2025-06-06 16:53:49] 2025-06-06 20:53:17,331 | INFO     | sum of square deviations: 211285822.0
[2025-06-06 16:53:49] 2025-06-06 20:53:17,332 | INFO     | sum of deviations: -10761508980.0
[2025-06-06 16:53:49] 2025-06-06 20:53:17,332 | INFO     | mean x: 1749240407.5
[2025-06-06 16:53:49] 2025-06-06 20:53:17,332 | INFO     | mean y: 2830915.0
[2025-06-06 16:53:49] 2025-06-06 20:53:17,332 | INFO     | -- intersect: 89097622866.96594
[2025-06-06 16:53:49] 2025-06-06 20:53:17,332 | INFO     | intersect: 89097622866.96594
[2025-06-06 16:53:49] 2025-06-06 20:53:17,332 | INFO     | chi2: 0.18972614377150604
[2025-06-06 16:53:49] 2025-06-06 20:53:17,333 | INFO     | -- intersect: 89097622866.96594
[2025-06-06 16:53:49] 2025-06-06 20:53:17,333 | INFO     | current memory leak: -50.93 B/s (using 88 data points, chi2=0.19)
[2025-06-06 16:53:49] 2025-06-06 20:53:17,333 | INFO     | could have reported an average CPU frequency of 2065 MHz (7 samples)
[2025-06-06 16:53:49] 2025-06-06 20:53:17,333 | INFO     | ..............................
[2025-06-06 16:53:49] 2025-06-06 20:53:17,333 | INFO     | . Timing measurements:
[2025-06-06 16:53:49] 2025-06-06 20:53:17,333 | INFO     | . get job = 0 s
[2025-06-06 16:53:49] 2025-06-06 20:53:17,333 | INFO     | . initial setup = 2 s
[2025-06-06 16:53:49] 2025-06-06 20:53:17,334 | INFO     | . payload setup = 9 s
[2025-06-06 16:53:49] 2025-06-06 20:53:17,334 | INFO     | . stage-in = 0 s
[2025-06-06 16:53:49] 2025-06-06 20:53:17,334 | INFO     | . payload execution = 5744 s
[2025-06-06 16:53:49] 2025-06-06 20:53:17,334 | INFO     | . stage-out = 0 s
[2025-06-06 16:53:49] 2025-06-06 20:53:17,334 | INFO     | . log creation = 0 s
[2025-06-06 16:53:49] 2025-06-06 20:53:17,334 | INFO     | ..............................
[2025-06-06 16:53:49] 2025-06-06 20:53:17,622 | INFO     | 
[2025-06-06 16:53:49] 2025-06-06 20:53:17,623 | INFO     | job summary report
[2025-06-06 16:53:49] 2025-06-06 20:53:17,623 | INFO     | --------------------------------------------------
[2025-06-06 16:53:49] 2025-06-06 20:53:17,623 | INFO     | PanDA job id: 6682504362
[2025-06-06 16:53:49] 2025-06-06 20:53:17,623 | INFO     | task id: 44871837
[2025-06-06 16:53:49] 2025-06-06 20:53:17,623 | INFO     | errors: (none)
[2025-06-06 16:53:49] 2025-06-06 20:53:17,624 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 16:53:49] 2025-06-06 20:53:17,624 | INFO     | pilot state: finished 
[2025-06-06 16:53:49] 2025-06-06 20:53:17,624 | INFO     | transexitcode: 0
[2025-06-06 16:53:49] 2025-06-06 20:53:17,624 | INFO     | exeerrorcode: 0
[2025-06-06 16:53:49] 2025-06-06 20:53:17,624 | INFO     | exeerrordiag: 
[2025-06-06 16:53:49] 2025-06-06 20:53:17,624 | INFO     | exitcode: 0
[2025-06-06 16:53:49] 2025-06-06 20:53:17,624 | INFO     | exitmsg: OK
[2025-06-06 16:53:49] 2025-06-06 20:53:17,625 | INFO     | cpuconsumptiontime: 60069 s
[2025-06-06 16:53:49] 2025-06-06 20:53:17,625 | INFO     | nevents: 400
[2025-06-06 16:53:49] 2025-06-06 20:53:17,625 | INFO     | neventsw: 0
[2025-06-06 16:53:49] 2025-06-06 20:53:17,625 | INFO     | pid: 27795
[2025-06-06 16:53:49] 2025-06-06 20:53:17,625 | INFO     | pgrp: 27795
[2025-06-06 16:53:49] 2025-06-06 20:53:17,625 | INFO     | corecount: 12
[2025-06-06 16:53:49] 2025-06-06 20:53:17,626 | INFO     | event service: False
[2025-06-06 16:53:49] 2025-06-06 20:53:17,626 | INFO     | sizes: {0: 2397505, 1: 2397704, 6: 2397966, 12: 2397994, 5757: 2424788, 5758: 2424787, 5759: 2433968, 5764: 2434106}
[2025-06-06 16:53:49] 2025-06-06 20:53:17,626 | INFO     | --------------------------------------------------
[2025-06-06 16:53:49] 2025-06-06 20:53:17,626 | INFO     | 
[2025-06-06 16:53:49] 2025-06-06 20:53:17,626 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-06 16:53:49] 2025-06-06 20:53:17,648 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 16:53:49] 2025-06-06 20:53:17,649 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 16:53:49] 2025-06-06 20:53:17,649 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 16:53:49] 2025-06-06 20:53:17,649 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 16:53:49] 2025-06-06 20:53:17,649 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 16:53:49] 2025-06-06 20:53:17,649 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 16:53:49] 2025-06-06 20:53:17,649 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 16:53:49] 2025-06-06 20:53:17,650 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 16:53:49] 2025-06-06 20:53:17,650 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 16:53:49] 2025-06-06 20:53:17,650 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 16:53:49] 2025-06-06 20:53:17,650 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 16:53:49] 2025-06-06 20:53:17,650 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 16:53:49] 2025-06-06 20:53:17,650 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 16:53:49] 2025-06-06 20:53:17,651 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 16:53:49] 2025-06-06 20:53:17,651 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 16:53:49] 2025-06-06 20:53:17,651 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 16:53:49] 2025-06-06 20:53:17,651 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 16:53:49] 2025-06-06 20:53:17,651 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 16:53:49] 2025-06-06 20:53:17,651 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 16:53:49] 2025-06-06 20:53:17,652 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 16:53:49] 2025-06-06 20:53:17,652 | INFO     | job 6682504362 has completed (purged errors)
[2025-06-06 16:53:49] 2025-06-06 20:53:17,652 | INFO     | overall cleanup function is called
[2025-06-06 16:53:49] 2025-06-06 20:53:18,656 | INFO     | --- collectZombieJob: --- 10, [27795]
[2025-06-06 16:53:49] 2025-06-06 20:53:18,656 | INFO     | zombie collector waiting for pid 27795
[2025-06-06 16:53:49] 2025-06-06 20:53:18,656 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 16:53:49] 2025-06-06 20:53:18,656 | INFO     | collected zombie processes
[2025-06-06 16:53:49] 2025-06-06 20:53:18,656 | INFO     | will attempt to kill all subprocesses of pid=27795
[2025-06-06 16:53:49] 2025-06-06 20:53:18,745 | INFO     | process IDs to be killed: [27795] (in reverse order)
[2025-06-06 16:53:49] 2025-06-06 20:53:18,796 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 16:53:49] 2025-06-06 20:53:18,796 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 16:53:49] 2025-06-06 20:53:18,800 | INFO     | did not find any defunct processes belonging to 27795
[2025-06-06 16:53:49] 2025-06-06 20:53:18,802 | INFO     | did not find any defunct processes belonging to 27795
[2025-06-06 16:53:49] 2025-06-06 20:53:18,803 | INFO     | ready for new job
[2025-06-06 16:53:49] 2025-06-06 20:53:18,803 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 16:53:49] 2025-06-06 20:53:18,804 | INFO     | ***************************************
[2025-06-06 16:53:49] 2025-06-06 20:53:18,804 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-06 16:53:49] 2025-06-06 20:53:18,804 | INFO     | ***************************************
[2025-06-06 16:53:49] 2025-06-06 20:53:18,804 | INFO     | 
[2025-06-06 16:53:49] 2025-06-06 20:53:18,805 | INFO     | architecture information:
[2025-06-06 16:53:49] 2025-06-06 20:53:18,806 | INFO     | executing command: cat /etc/os-release
[2025-06-06 16:53:49] 2025-06-06 20:53:18,820 | INFO     | cat /etc/os-release:
[2025-06-06 16:53:49] NAME="CentOS Linux"
[2025-06-06 16:53:49] VERSION="7 (Core)"
[2025-06-06 16:53:49] ID="centos"
[2025-06-06 16:53:49] ID_LIKE="rhel fedora"
[2025-06-06 16:53:49] VERSION_ID="7"
[2025-06-06 16:53:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 16:53:49] ANSI_COLOR="0;31"
[2025-06-06 16:53:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 16:53:49] HOME_URL="https://www.centos.org/"
[2025-06-06 16:53:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 16:53:49] 
[2025-06-06 16:53:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 16:53:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 16:53:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 16:53:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 16:53:49] 
[2025-06-06 16:53:49] 2025-06-06 20:53:18,820 | INFO     | ***************************************
[2025-06-06 16:53:49] 2025-06-06 20:53:19,323 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-06 16:53:49] 2025-06-06 20:53:19,338 | INFO     | sufficient remaining disk space (29380050944 B)
[2025-06-06 16:53:49] 2025-06-06 20:53:19,338 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 16:53:49] 2025-06-06 20:53:19,339 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 16:53:49] 2025-06-06 20:53:19,339 | INFO     | update_server=False
[2025-06-06 16:53:49] 2025-06-06 20:53:19,339 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 16:53:49] 2025-06-06 20:53:19,339 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 16:53:49] 2025-06-06 20:53:19,340 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 16:53:49] 2025-06-06 20:53:19,340 | INFO     | aborting loop
[2025-06-06 16:53:49] 2025-06-06 20:53:19,340 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 16:53:49] 2025-06-06 20:53:19,483 | INFO     | all payload control threads have been joined
[2025-06-06 16:53:49] 2025-06-06 20:53:19,925 | INFO     | all job control threads have been joined
[2025-06-06 16:53:49] 2025-06-06 20:53:20,298 | INFO     | all data control threads have been joined
[2025-06-06 16:53:49] 2025-06-06 20:53:20,340 | INFO     | [job] retrieve thread has finished
[2025-06-06 16:53:49] 2025-06-06 20:53:20,342 | INFO     | [job] job monitor thread has finished
[2025-06-06 16:53:49] 2025-06-06 20:53:20,346 | INFO     | [job] queue monitor thread has finished
[2025-06-06 16:53:49] 2025-06-06 20:53:20,402 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 16:53:49] 2025-06-06 20:53:20,475 | INFO     | [payload] validate_post thread has finished
[2025-06-06 16:53:49] 2025-06-06 20:53:20,488 | INFO     | [payload] control thread has finished
[2025-06-06 16:53:49] 2025-06-06 20:53:20,516 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 16:53:49] 2025-06-06 20:53:20,930 | INFO     | [job] control thread has finished
[2025-06-06 16:53:49] 2025-06-06 20:53:20,990 | INFO     | [payload] failed_post thread has finished
[2025-06-06 16:53:49] 2025-06-06 20:53:21,070 | INFO     | [data] copytool_in thread has finished
[2025-06-06 16:53:49] 2025-06-06 20:53:21,304 | INFO     | [data] control thread has finished
[2025-06-06 16:53:49] 2025-06-06 20:53:21,378 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 16:53:49] 2025-06-06 20:53:21,583 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 16:53:49] 2025-06-06 20:53:21,731 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 16:53:49] 2025-06-06 20:53:21,731 | INFO     | [job] validate thread has finished
[2025-06-06 16:53:49] 2025-06-06 20:53:22,521 | INFO     | [data] copytool_out thread has finished
[2025-06-06 16:53:49] 2025-06-06 20:53:23,346 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 16:53:49] 2025-06-06 20:53:24,024 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140452568704832)>', '<ExcThread(monitor, started 140452133070592)>']
[2025-06-06 16:53:49] 2025-06-06 20:53:29,031 | INFO     | all workflow threads have been joined
[2025-06-06 16:53:49] 2025-06-06 20:53:29,031 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 16:53:49] 2025-06-06 20:53:29,031 | INFO     | traces error code: 0
[2025-06-06 16:53:49] 2025-06-06 20:53:29,032 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 16:53:49] 2025-06-06 20:53:49,664 | INFO     | PID=21319 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-06 16:53:49] 2025-06-06 20:53:49,664 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 16:53:49] 2025-06-06 20:53:49,664 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 16:53:49] 2025-06-06 20:53:49,664 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 16:53:49] 2025-06-06 20:53:49,664 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 16:53:49] 2025-06-06 20:53:49,665 | INFO     | [monitor] control thread has ended
[2025-06-06 16:53:49] 2025-06-06 20:53:49,764 [wrapper] ==== pilot stdout END ====
[2025-06-06 16:53:49] 2025-06-06 20:53:49,767 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 16:53:49] 2025-06-06 20:53:49,771 [wrapper] pilotpid: 21319
[2025-06-06 16:53:49] 2025-06-06 20:53:49,774 [wrapper] Pilot exit status: 0
[2025-06-06 16:53:49] 2025-06-06 20:53:49,790 [wrapper] pandaids: 6682504362
[2025-06-06 16:53:49] 2025-06-06 20:53:49,829 [wrapper] cleanup supervisor_pilot 21684 21320
[2025-06-06 16:53:49] 2025-06-06 20:53:49,833 [wrapper] Test setup, not cleaning
[2025-06-06 16:53:49] 2025-06-06 20:53:49,837 [wrapper] apfmon messages muted
[2025-06-06 16:53:49] 2025-06-06 20:53:49,840 [wrapper] ==== wrapper stdout END ====
[2025-06-06 16:53:49] 2025-06-06 20:53:49,844 [wrapper] ==== wrapper stderr END ====
[2025-06-06 16:53:49]  *** Error codes and diagnostics ***
[2025-06-06 16:53:49]     "exeErrorCode": 0,
[2025-06-06 16:53:49]     "exeErrorDiag": "",
[2025-06-06 16:53:49]     "pilotErrorCode": 0,
[2025-06-06 16:53:49]     "pilotErrorDiag": "",
[2025-06-06 16:53:49]  *** Listing of results directory ***
[2025-06-06 16:53:49] total 418108
[2025-06-06 16:53:49] -rwx------ 1 boincer umatlas     37140 Jun  6 15:16 runpilot2-wrapper.sh
[2025-06-06 16:53:49] -rw-r--r-- 1 boincer umatlas      5112 Jun  6 15:16 queuedata.json
[2025-06-06 16:53:49] -rw-r--r-- 1 boincer umatlas    529402 Jun  6 15:16 pilot3.tar.gz
[2025-06-06 16:53:49] -rw-r--r-- 1 boincer umatlas       100 Jun  6 15:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 16:53:49] -rwxr-xr-x 1 boincer umatlas      7986 Jun  6 15:16 run_atlas
[2025-06-06 16:53:49] -rw-r--r-- 1 boincer umatlas       105 Jun  6 15:16 job.xml
[2025-06-06 16:53:49] -rw-r--r-- 2 boincer umatlas 226349662 Jun  6 15:16 EVNT.44871834._003324.pool.root.1
[2025-06-06 16:53:49] -rw-r--r-- 2 boincer umatlas     15095 Jun  6 15:16 start_atlas.sh
[2025-06-06 16:53:49] drwxrwx--x 2 boincer umatlas      4096 Jun  6 15:16 shared
[2025-06-06 16:53:49] -rw-r--r-- 2 boincer umatlas    541904 Jun  6 15:16 input.tar.gz
[2025-06-06 16:53:49] -rw-r--r-- 1 boincer umatlas         0 Jun  6 15:16 boinc_lockfile
[2025-06-06 16:53:49] -rw-r--r-- 1 boincer umatlas      2555 Jun  6 15:16 pandaJob.out
[2025-06-06 16:53:49] -rw------- 1 boincer umatlas    985748 Jun  6 15:16 agis_schedconf.cvmfs.json
[2025-06-06 16:53:49] -rw------- 1 boincer umatlas   1598969 Jun  6 15:16 agis_ddmendpoints.agis.ALL.json
[2025-06-06 16:53:49] drwx------ 4 boincer umatlas      4096 Jun  6 15:16 pilot3
[2025-06-06 16:53:49] -rw-r--r-- 1 boincer umatlas      5867 Jun  6 16:49 init_data.xml
[2025-06-06 16:53:49] -rw------- 1 boincer umatlas 196096366 Jun  6 16:52 HITS.44871837._102351.pool.root.1
[2025-06-06 16:53:49] -rw-r--r-- 1 boincer umatlas       530 Jun  6 16:52 boinc_task_state.xml
[2025-06-06 16:53:49] -rw------- 1 boincer umatlas      1047 Jun  6 16:53 memory_monitor_summary.json
[2025-06-06 16:53:49] -rw------- 1 boincer umatlas        95 Jun  6 16:53 pilot_heartbeat.json
[2025-06-06 16:53:49] -rw------- 1 boincer umatlas    362662 Jun  6 16:53 log.44871837._102351.job.log.tgz.1
[2025-06-06 16:53:49] -rw------- 1 boincer umatlas      7782 Jun  6 16:53 heartbeat.json
[2025-06-06 16:53:49] -rw-r--r-- 1 boincer umatlas      8192 Jun  6 16:53 boinc_mmap_file
[2025-06-06 16:53:49] -rw-r--r-- 1 boincer umatlas        27 Jun  6 16:53 wrapper_checkpoint.txt
[2025-06-06 16:53:49] -rw------- 1 boincer umatlas       745 Jun  6 16:53 pilotlog.txt
[2025-06-06 16:53:49] -rw------- 1 boincer umatlas    543025 Jun  6 16:53 log.44871837._102351.job.log.1
[2025-06-06 16:53:49] -rw------- 1 boincer umatlas       357 Jun  6 16:53 output.list
[2025-06-06 16:53:49] -rw-r--r-- 1 boincer umatlas       620 Jun  6 16:53 runtime_log
[2025-06-06 16:53:49] -rw------- 1 boincer umatlas    921600 Jun  6 16:53 result.tar.gz
[2025-06-06 16:53:49] -rw-r--r-- 1 boincer umatlas      8662 Jun  6 16:53 runtime_log.err
[2025-06-06 16:53:49] -rw------- 1 boincer umatlas       659 Jun  6 16:53 7S9NDm8irh7n9Rq4apOajLDm4fhM0noT9bVof3QYDmD6aKDmZYMaKm.diag
[2025-06-06 16:53:49] -rw-r--r-- 1 boincer umatlas     21392 Jun  6 16:53 stderr.txt
[2025-06-06 16:53:49] HITS file was successfully produced:
[2025-06-06 16:53:49] -rw------- 1 boincer umatlas 196096366 Jun  6 16:52 shared/HITS.pool.root.1
[2025-06-06 16:53:49]  *** Contents of shared directory: ***
[2025-06-06 16:53:49] total 414000
[2025-06-06 16:53:49] -rw-r--r-- 2 boincer umatlas 226349662 Jun  6 15:16 ATLAS.root_0
[2025-06-06 16:53:49] -rw-r--r-- 2 boincer umatlas     15095 Jun  6 15:16 start_atlas.sh
[2025-06-06 16:53:49] -rw-r--r-- 2 boincer umatlas    541904 Jun  6 15:16 input.tar.gz
[2025-06-06 16:53:49] -rw------- 1 boincer umatlas 196096366 Jun  6 16:52 HITS.pool.root.1
[2025-06-06 16:53:49] -rw------- 1 boincer umatlas    921600 Jun  6 16:53 result.tar.gz
16:53:51 (17721): run_atlas exited; CPU time 60032.158267
16:53:51 (17721): called boinc_finish(0)

</stderr_txt>
]]>

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