Stderr output

<core_client_version>8.2.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-07 00:52:20 (15220): Detected: vboxwrapper 26206
2025-06-07 00:52:20 (15220): Detected: BOINC client v8.2.1
2025-06-07 00:52:21 (15220): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-06-07 00:52:21 (15220): Successfully copied 'init_data.xml' to the shared directory.
2025-06-07 00:52:21 (15220): Create VM. (boinc_cee4f072a5c190e3, slot#5)
2025-06-07 00:52:22 (15220): Setting Memory Size for VM. (4600MB)
2025-06-07 00:52:24 (15220): Setting CPU Count for VM. (6)
2025-06-07 00:52:24 (15220): Setting Chipset Options for VM.
2025-06-07 00:52:25 (15220): Setting Graphics Controller Options for VM.
2025-06-07 00:52:25 (15220): Setting Boot Options for VM.
2025-06-07 00:52:25 (15220): Setting Network Configuration for NAT.
2025-06-07 00:52:25 (15220): Enabling VM Network Access.
2025-06-07 00:52:26 (15220): Disabling USB Support for VM.
2025-06-07 00:52:26 (15220): Disabling COM Port Support for VM.
2025-06-07 00:52:26 (15220): Disabling LPT Port Support for VM.
2025-06-07 00:52:27 (15220): Disabling Audio Support for VM.
2025-06-07 00:52:27 (15220): Disabling Clipboard Support for VM.
2025-06-07 00:52:27 (15220): Disabling Drag and Drop Support for VM.
2025-06-07 00:52:27 (15220): Adding storage controller(s) to VM.
2025-06-07 00:52:28 (15220): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-07 00:52:30 (15220): Adding VirtualBox Guest Additions to VM.
2025-06-07 00:52:31 (15220): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-07 00:52:31 (15220): forwarding host port 54657 to guest port 80
2025-06-07 00:52:31 (15220): Enabling remote desktop for VM.
2025-06-07 00:52:32 (15220): Required extension pack not installed, remote desktop not enabled.
2025-06-07 00:52:32 (15220): Enabling shared directory for VM.
2025-06-07 00:52:32 (15220): Starting VM using VBoxManage interface. (boinc_cee4f072a5c190e3, slot#5)
2025-06-07 00:52:39 (15220): Successfully started VM. (PID = '15692')
2025-06-07 00:52:39 (15220): Reporting VM Process ID to BOINC.
2025-06-07 00:52:39 (15220): Guest Log: BIOS: VirtualBox 7.1.8
2025-06-07 00:52:39 (15220): Guest Log: CPUID EDX: 0x178bfbff
2025-06-07 00:52:39 (15220): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-07 00:52:39 (15220): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-07 00:52:39 (15220): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-07 00:52:39 (15220): Detected: Web Application Enabled (http://localhost:54657)
2025-06-07 00:52:39 (15220): Preference change detected
2025-06-07 00:52:39 (15220): Setting CPU throttle for VM. (80%)
2025-06-07 00:52:39 (15220): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-07 00:52:41 (15220): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-07 00:52:41 (15220): Guest Log: BIOS: Booting from Hard Disk...
2025-06-07 00:52:47 (15220): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-07 00:52:47 (15220): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-07 00:52:47 (15220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-07 00:53:01 (15220): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-07 00:53:01 (15220): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-07 00:53:39 (15220): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-07 00:53:39 (15220): Guest Log: 00:00:00.000149 main     Log opened 2025-06-07T00:53:36.869249000Z
2025-06-07 00:53:39 (15220): Guest Log: 00:00:00.000255 main     OS Product: Linux
2025-06-07 00:53:39 (15220): Guest Log: 00:00:00.000311 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-07 00:53:39 (15220): Guest Log: 00:00:00.000346 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-07 00:53:39 (15220): Guest Log: 00:00:00.000376 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-07 00:53:39 (15220): Guest Log: 00:00:00.000377 main     Process ID: 1345
2025-06-07 00:53:39 (15220): Guest Log: 00:00:00.000377 main     Package type: LINUX_64BITS_GENERIC
2025-06-07 00:53:39 (15220): Guest Log: 00:00:00.001182 main     5.2.32 r132073 started. Verbose level = 0
2025-06-07 00:53:40 (15220): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-07 00:53:40 (15220): Guest Log: [INFO] Mounting shared directory
2025-06-07 00:53:40 (15220): Guest Log: [INFO] Checking for init_data.xml
2025-06-07 00:53:45 (15220): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-07 00:53:45 (15220): Guest Log: [INFO] Detected branch: prod
2025-06-07 00:53:45 (15220): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-07 00:53:45 (15220): Guest Log: Copying input files
2025-06-07 00:53:47 (15220): Guest Log: Copied input files into RunAtlas.
2025-06-07 00:53:47 (15220): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-07 00:53:47 (15220): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-07 00:53:47 (15220): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-07 00:53:47 (15220): Guest Log: Further information can be found at the LHC@home message board.
2025-06-07 00:53:49 (15220): Guest Log: 00:00:10.005052 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 809 134 538 000ns (GuestNow=1 749 246 807 738 779 000 ns GuestLast=1 749 257 616 873 317 000 ns fSetTimeLastLoop=true )
2025-06-07 00:53:56 (15220): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-07 00:53:56 (15220): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-07 00:53:56 (15220): Guest Log: 2.6.3.0 1623 0 32188 146876 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-06-07 00:53:59 (15220): Guest Log: copied the webapp to /var/www
2025-06-07 00:53:59 (15220): Guest Log: ATHENA_PROC_NUMBER=6
2025-06-07 00:53:59 (15220): Guest Log: ATHENA_CORE_NUMBER=6
2025-06-07 00:53:59 (15220): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-07 00:53:59 (15220): Guest Log:  *** Starting ATLAS job. (PandaID=6671147388 taskID=44871837) ***
2025-06-07 02:32:46 (15220): Status Report: Elapsed Time: '6000.000000'
2025-06-07 02:32:46 (15220): Status Report: CPU Time: '28094.000000'
2025-06-07 04:13:10 (15220): Status Report: Elapsed Time: '12000.000000'
2025-06-07 04:13:10 (15220): Status Report: CPU Time: '60481.484375'
2025-06-07 05:12:14 (15220): Guest Log:  *** Job finished ***
2025-06-07 05:12:14 (15220): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-07 05:12:14 (15220): Guest Log: 2025-06-07 02:11:38,655 | INFO     | [data] copytool_out thread has finished
2025-06-07 05:12:14 (15220): Guest Log: 2025-06-07 02:11:38,656 | INFO     | [job] control thread has finished
2025-06-07 05:12:14 (15220): Guest Log: 2025-06-07 02:11:42,313 | INFO     | [data] queue_monitor thread has finished
2025-06-07 05:12:14 (15220): Guest Log: 2025-06-07 02:11:44,156 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140170196514624)>', '<ExcThread(monitor, started 140169546036992)>']
2025-06-07 05:12:14 (15220): Guest Log: 2025-06-07 02:11:45,022 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-07 05:12:14 (15220): Guest Log: 2025-06-07 02:11:45,023 | INFO     | [monitor] control thread has ended
2025-06-07 05:12:14 (15220): Guest Log: 2025-06-07 02:11:49,161 | INFO     | all workflow threads have been joined
2025-06-07 05:12:14 (15220): Guest Log: 2025-06-07 02:11:49,162 | INFO     | end of generic workflow (traces error code: 0)
2025-06-07 05:12:14 (15220): Guest Log: 2025-06-07 02:11:49,162 | INFO     | traces error code: 0
2025-06-07 05:12:14 (15220): Guest Log: 2025-06-07 02:11:49,163 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-07 05:12:14 (15220): Guest Log: 2025-06-07 02:11:49,315 [wrapper] ==== pilot stdout END ====
2025-06-07 05:12:14 (15220): Guest Log: 2025-06-07 02:11:49,323 [wrapper] ==== wrapper stdout RESUME ====
2025-06-07 05:12:14 (15220): Guest Log: 2025-06-07 02:11:49,331 [wrapper] pilotpid: 5964
2025-06-07 05:12:14 (15220): Guest Log: 2025-06-07 02:11:49,338 [wrapper] Pilot exit status: 0
2025-06-07 05:12:14 (15220): Guest Log: 2025-06-07 02:11:49,644 [wrapper] pandaids: 6671147388
2025-06-07 05:12:14 (15220): Guest Log: 2025-06-07 02:11:49,684 [wrapper] cleanup supervisor_pilot 14788 5965
2025-06-07 05:12:14 (15220): Guest Log: 2025-06-07 02:11:49,691 [wrapper] Test setup, not cleaning
2025-06-07 05:12:14 (15220): Guest Log: 2025-06-07 02:11:49,699 [wrapper] apfmon messages muted
2025-06-07 05:12:14 (15220): Guest Log: 2025-06-07 02:11:49,706 [wrapper] ==== wrapper stdout END ====
2025-06-07 05:12:14 (15220): Guest Log: 2025-06-07 02:11:49,714 [wrapper] ==== wrapper stderr END ====
2025-06-07 05:12:14 (15220): Guest Log:  *** Error codes and diagnostics ***
2025-06-07 05:12:14 (15220): Guest Log:     "exeErrorCode": 0,
2025-06-07 05:12:14 (15220): Guest Log:     "exeErrorDiag": "",
2025-06-07 05:12:14 (15220): Guest Log:     "pilotErrorCode": 0,
2025-06-07 05:12:14 (15220): Guest Log:     "pilotErrorDiag": "",
2025-06-07 05:12:14 (15220): Guest Log:  *** Listing of results directory ***
2025-06-07 05:12:14 (15220): Guest Log: total 205412
2025-06-07 05:12:14 (15220): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 29 12:12 pilot3.tar.gz
2025-06-07 05:12:14 (15220): Guest Log: -rwx------. 1 atlas atlas     37140 May 29 12:23 runpilot2-wrapper.sh
2025-06-07 05:12:14 (15220): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 29 12:23 queuedata.json
2025-06-07 05:12:14 (15220): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  6 21:53 start_atlas.sh
2025-06-07 05:12:14 (15220): Guest Log: -rwxr-xr-x. 1 atlas atlas    508883 Jun  6 21:53 input.tar.gz
2025-06-07 05:12:14 (15220): Guest Log: -rwxr-xr-x. 1 atlas atlas      8824 Jun  6 21:53 init_data.xml
2025-06-07 05:12:14 (15220): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  6 21:53 EVNT.44871834._002903.pool.root.1 -> /data/./ATLAS.root_0
2025-06-07 05:12:14 (15220): Guest Log: -rw-r--r--. 1 atlas atlas      2559 Jun  6 21:53 pandaJob.out
2025-06-07 05:12:14 (15220): Guest Log: -rw-------. 1 atlas atlas    985756 Jun  6 21:54 agis_schedconf.cvmfs.json
2025-06-07 05:12:14 (15220): Guest Log: drwx------. 4 atlas atlas      4096 Jun  6 21:54 pilot3
2025-06-07 05:12:14 (15220): Guest Log: -rw-------. 1 atlas atlas 203312961 Jun  7 02:10 HITS.44871837._100067.pool.root.1
2025-06-07 05:12:14 (15220): Guest Log: -rw-------. 1 atlas atlas        95 Jun  7 02:11 pilot_heartbeat.json
2025-06-07 05:12:14 (15220): Guest Log: -rw-------. 1 atlas atlas      1027 Jun  7 02:11 memory_monitor_summary.json
2025-06-07 05:12:14 (15220): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  7 02:11 agis_ddmendpoints.agis.ALL.json
2025-06-07 05:12:14 (15220): Guest Log: -rw-------. 1 atlas atlas    354681 Jun  7 02:11 log.44871837._100067.job.log.tgz.1
2025-06-07 05:12:14 (15220): Guest Log: -rw-------. 1 atlas atlas      7677 Jun  7 02:11 heartbeat.json
2025-06-07 05:12:14 (15220): Guest Log: -rw-------. 1 atlas atlas      4413 Jun  7 02:11 pilotlog.txt
2025-06-07 05:12:14 (15220): Guest Log: -rw-------. 1 atlas atlas   1279201 Jun  7 02:11 log.44871837._100067.job.log.1
2025-06-07 05:12:14 (15220): Guest Log: -rw-------. 1 atlas atlas       357 Jun  7 02:11 output.list
2025-06-07 05:12:14 (15220): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  7 02:11 runtime_log
2025-06-07 05:12:14 (15220): Guest Log: -rw-------. 1 atlas atlas   1648640 Jun  7 02:11 result.tar.gz
2025-06-07 05:12:14 (15220): Guest Log: -rw-r--r--. 1 atlas atlas      8571 Jun  7 02:11 runtime_log.err
2025-06-07 05:12:14 (15220): Guest Log: -rw-------. 1 atlas atlas       653 Jun  7 02:11 LgAMDm7Sre7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgXeKDmepszUm.diag
2025-06-07 05:12:14 (15220): Guest Log: Looking for outputfile HITS.44871837._100067.pool.root.1
2025-06-07 05:12:14 (15220): Guest Log: HITS file was successfully produced
2025-06-07 05:12:14 (15220): Guest Log: -rw-------. 1 atlas atlas 203312961 Jun  7 02:10 /home/atlas/RunAtlas/HITS.44871837._100067.pool.root.1
2025-06-07 05:12:15 (15220): Guest Log: Successfully finished the ATLAS job!
2025-06-07 05:12:15 (15220): Guest Log: Copying the results back to the shared directory!
2025-06-07 05:12:15 (15220): Guest Log:  *** Contents of shared directory: ***
2025-06-07 05:12:15 (15220): Guest Log: total 418808
2025-06-07 05:12:15 (15220): Guest Log: -rwxrwxrwx. 1 root root 223351515 Jun  6 21:52 ATLAS.root_0
2025-06-07 05:12:15 (15220): Guest Log: -rwxrwxrwx. 1 root root 203312961 Jun  7  2025 HITS.pool.root.1
2025-06-07 05:12:15 (15220): Guest Log: -rwxrwxrwx. 1 root root      8824 Jun  6 21:52 init_data.xml
2025-06-07 05:12:15 (15220): Guest Log: -rwxrwxrwx. 1 root root    508883 Jun  6 18:33 input.tar.gz
2025-06-07 05:12:15 (15220): Guest Log: -rwxrwxrwx. 1 root root   1648640 Jun  7  2025 result.tar.gz
2025-06-07 05:12:15 (15220): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  6 18:33 start_atlas.sh
2025-06-07 05:12:15 (15220): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-07 05:12:15 (15220): VM Completion File Detected.
2025-06-07 05:12:15 (15220): Powering off VM.
2025-06-07 05:12:17 (15220): Successfully stopped VM.
2025-06-07 05:12:17 (15220): Deregistering VM. (boinc_cee4f072a5c190e3, slot#5)
2025-06-07 05:12:17 (15220): Removing network bandwidth throttle group from VM.
2025-06-07 05:12:17 (15220): Removing VM from VirtualBox.
05:12:22 (15220): called boinc_finish(0)

</stderr_txt>
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