Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:57:06 (1353): wrapper (7.7.26015): starting
19:57:06 (1353): wrapper: running run_atlas (--nthreads 8)
[2025-06-06 19:57:06] Arguments: --nthreads 8
[2025-06-06 19:57:06] Threads: 8
[2025-06-06 19:57:06] Checking for CVMFS
[2025-06-06 19:57:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 19:57:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 19:57:07] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 19:57:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 19:57:07] 2.11.2.0 13438 36411 90360 146869 3 60 17197696 25165825 3970 130560 0 20291486 99.788 23593000 2453 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-06 19:57:07] CVMFS is ok
[2025-06-06 19:57:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 19:57:07] Checking for apptainer binary...
[2025-06-06 19:57:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 19:57:07] Running /usr/bin/apptainer --version
[2025-06-06 19:57:07] apptainer version 1.3.2-1.el7
[2025-06-06 19:57:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 19:57:09] cg-vwn257.simple-grid.lan
[2025-06-06 19:57:09] apptainer works
[2025-06-06 19:57:09] Set ATHENA_PROC_NUMBER=8
[2025-06-06 19:57:09] Set ATHENA_CORE_NUMBER=8
[2025-06-06 19:57:09] Starting ATLAS job with PandaID=6680059326
[2025-06-06 19:57:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 21:06:04]  *** The last 200 lines of the pilot log: ***
[2025-06-06 21:06:04] 2025-06-06 18:10:08,411 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6680059326/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 21:06:04] 2025-06-06 18:10:08,412 | INFO     | extracted standard info from prmon json
[2025-06-06 21:06:04] 2025-06-06 18:10:08,412 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 21:06:04] 2025-06-06 18:10:08,412 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 21:06:04] 2025-06-06 18:10:08,413 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 21:06:04] 2025-06-06 18:10:08,413 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 21:06:04] 2025-06-06 18:10:08,413 | WARNING  | wrong length of table data, x=[1749233001.0, 1749233062.0], y=[2415341.0, 2508461.0] (must be same and length>=4)
[2025-06-06 21:06:04] 2025-06-06 18:10:08,414 | INFO     | ..............................
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | . Timing measurements:
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | . get job = 0 s
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | . initial setup = 2 s
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | . payload setup = 12 s
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | . stage-in = 0 s
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | . payload execution = 520 s
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | . stage-out = 0 s
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | . log creation = 0 s
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | ..............................
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-06 21:06:04] 2025-06-06 18:10:08,416 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/7/PanDA_Pilot-6680059326/pilotlog.txt
[2025-06-06 21:06:04] 2025-06-06 18:10:08,587 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-06-06 21:06:04] - Log from pilotlog.txt -
[2025-06-06 21:06:04] 2025-06-06 18:10:08,410 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 21:06:04] 2025-06-06 18:10:08,411 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6680059326/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 21:06:04] 2025-06-06 18:10:08,412 | INFO     | extracted standard info from prmon json
[2025-06-06 21:06:04] 2025-06-06 18:10:08,412 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 21:06:04] 2025-06-06 18:10:08,412 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 21:06:04] 2025-06-06 18:10:08,413 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 21:06:04] 2025-06-06 18:10:08,413 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 21:06:04] 2025-06-06 18:10:08,413 | WARNING  | wrong length of table data, x=[1749233001.0, 1749233062.0], y=[2415341.0, 2508461.0] (must be same and length>=4)
[2025-06-06 21:06:04] 2025-06-06 18:10:08,414 | INFO     | ..............................
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | . Timing measurements:
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | . get job = 0 s
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | . initial setup = 2 s
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | . payload setup = 12 s
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | . stage-in = 0 s
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | . payload execution = 520 s
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | . stage-out = 0 s
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | . log creation = 0 s
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | ..............................
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-06 21:06:04] 2025-06-06 18:10:08,416 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/7/PanDA_Pilot-6680059326/pilotlog.txt
[2025-06-06 21:06:04] 2025-06-06 18:10:08,587 | WARNING  | 
[2025-06-06 21:06:04] [begin log extracts]
[2025-06-06 21:06:04] - Log from pilotlog.txt -
[2025-06-06 21:06:04] 2025-06-06 18:10:08,410 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 21:06:04] 2025-06-06 18:10:08,411 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6680059326/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 21:06:04] 2025-06-06 18:10:08,412 | INFO     | extracted standard info from prmon json
[2025-06-06 21:06:04] 2025-06-06 18:10:08,412 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 21:06:04] 2025-06-06 18:10:08,412 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 21:06:04] 2025-06-06 18:10:08,413 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 21:06:04] 2025-06-06 18:10:08,413 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 21:06:04] 2025-06-06 18:10:08,413 | WARNING  | wrong length of table data, x=[1749233001.0, 1749233062.0], y=[2415341.0, 2508461.0] (must be same and length>=4)
[2025-06-06 21:06:04] 2025-06-06 18:10:08,414 | INFO     | ..............................
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | . Timing measurements:
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | . get job = 0 s
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | . initial setup = 2 s
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | . payload setup = 12 s
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | . stage-in = 0 s
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | . payload execution = 520 s
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | . stage-out = 0 s
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | . log creation = 0 s
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | ..............................
[2025-06-06 21:06:04] 2025-06-06 18:10:08,415 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-06 21:06:04] 2025-06-06 18:10:08,416 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/7/PanDA_Pilot-6680059326/pilotlog.txt
[2025-06-06 21:06:04] [end log extracts]
[2025-06-06 21:06:04] 2025-06-06 18:10:08,587 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-06-06 21:06:04] 2025-06-06 18:10:08,588 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-06-06 21:06:04] 2025-06-06 18:10:08,719 | INFO     | 
[2025-06-06 21:06:04] 2025-06-06 18:10:08,719 | INFO     | job summary report
[2025-06-06 21:06:04] 2025-06-06 18:10:08,719 | INFO     | --------------------------------------------------
[2025-06-06 21:06:04] 2025-06-06 18:10:08,719 | INFO     | PanDA job id: 6680059326
[2025-06-06 21:06:04] 2025-06-06 18:10:08,719 | INFO     | task id: 45006595
[2025-06-06 21:06:04] 2025-06-06 18:10:08,719 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-06-06 18:06:33,129 CRITICAL Transform executor raised TransformValidationExceptio
[2025-06-06 21:06:04] 2025-06-06 18:10:08,720 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 21:06:04] 2025-06-06 18:10:08,720 | INFO     | pilot state: failed 
[2025-06-06 21:06:04] 2025-06-06 18:10:08,720 | INFO     | transexitcode: 65
[2025-06-06 21:06:04] 2025-06-06 18:10:08,720 | INFO     | exeerrorcode: 65
[2025-06-06 21:06:04] 2025-06-06 18:10:08,720 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: "ISF_Kernel_FullG4MT_QS                                 4     3   FATAL  S
[2025-06-06 21:06:04] 2025-06-06 18:10:08,720 | INFO     | exitcode: 65
[2025-06-06 21:06:04] 2025-06-06 18:10:08,720 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: "ISF_Kernel_FullG4MT_QS                                 4     3   FATAL  Standa
[2025-06-06 21:06:04] 2025-06-06 18:10:08,720 | INFO     | cpuconsumptiontime: 780 s
[2025-06-06 21:06:04] 2025-06-06 18:10:08,720 | INFO     | nevents: 0
[2025-06-06 21:06:04] 2025-06-06 18:10:08,720 | INFO     | neventsw: 0
[2025-06-06 21:06:04] 2025-06-06 18:10:08,720 | INFO     | pid: 11878
[2025-06-06 21:06:04] 2025-06-06 18:10:08,721 | INFO     | pgrp: 11878
[2025-06-06 21:06:04] 2025-06-06 18:10:08,721 | INFO     | corecount: 8
[2025-06-06 21:06:04] 2025-06-06 18:10:08,721 | INFO     | event service: False
[2025-06-06 21:06:04] 2025-06-06 18:10:08,721 | INFO     | sizes: {0: 2397120, 1: 2397319, 8: 2397525, 12: 2397553, 537: 2425810, 540: 2430232, 745: 2430346}
[2025-06-06 21:06:04] 2025-06-06 18:10:08,721 | INFO     | --------------------------------------------------
[2025-06-06 21:06:04] 2025-06-06 18:10:08,721 | INFO     | 
[2025-06-06 21:06:04] 2025-06-06 18:10:08,721 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-06 21:06:04] 2025-06-06 18:10:08,745 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 21:06:04] 2025-06-06 18:10:08,746 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 21:06:04] 2025-06-06 18:10:08,746 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 21:06:04] 2025-06-06 18:10:08,746 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 21:06:04] 2025-06-06 18:10:08,746 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 21:06:04] 2025-06-06 18:10:08,746 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 21:06:04] 2025-06-06 18:10:08,746 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 21:06:04] 2025-06-06 18:10:08,746 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 21:06:04] 2025-06-06 18:10:08,746 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 21:06:04] 2025-06-06 18:10:08,746 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 21:06:04] 2025-06-06 18:10:08,747 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 21:06:04] 2025-06-06 18:10:08,747 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 21:06:04] 2025-06-06 18:10:08,747 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 21:06:04] 2025-06-06 18:10:08,747 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 21:06:04] 2025-06-06 18:10:08,747 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 21:06:04] 2025-06-06 18:10:08,747 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 21:06:04] 2025-06-06 18:10:08,747 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 21:06:04] 2025-06-06 18:10:08,747 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 21:06:04] 2025-06-06 18:10:08,747 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 21:06:04] 2025-06-06 18:10:08,747 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 21:06:04] 2025-06-06 18:10:08,748 | INFO     | job 6680059326 has completed (purged errors)
[2025-06-06 21:06:04] 2025-06-06 18:10:08,748 | INFO     | overall cleanup function is called
[2025-06-06 21:06:04] 2025-06-06 18:10:09,757 | INFO     | --- collectZombieJob: --- 10, [11878]
[2025-06-06 21:06:04] 2025-06-06 18:10:09,757 | INFO     | zombie collector waiting for pid 11878
[2025-06-06 21:06:04] 2025-06-06 18:10:09,757 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 21:06:04] 2025-06-06 18:10:09,757 | INFO     | collected zombie processes
[2025-06-06 21:06:04] 2025-06-06 18:10:09,757 | INFO     | will attempt to kill all subprocesses of pid=11878
[2025-06-06 21:06:04] 2025-06-06 18:10:09,881 | INFO     | process IDs to be killed: [11878] (in reverse order)
[2025-06-06 21:06:04] 2025-06-06 18:10:10,389 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 21:06:04] 2025-06-06 18:10:10,390 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 21:06:04] 2025-06-06 18:10:10,394 | INFO     | did not find any defunct processes belonging to 11878
[2025-06-06 21:06:04] 2025-06-06 18:10:10,397 | INFO     | did not find any defunct processes belonging to 11878
[2025-06-06 21:06:04] 2025-06-06 18:10:10,397 | INFO     | ready for new job
[2025-06-06 21:06:04] 2025-06-06 18:10:10,397 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 21:06:04] 2025-06-06 18:10:10,399 | INFO     | **************************************
[2025-06-06 21:06:04] 2025-06-06 18:10:10,399 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 21:06:04] 2025-06-06 18:10:10,399 | INFO     | **************************************
[2025-06-06 21:06:04] 2025-06-06 18:10:10,399 | INFO     | 
[2025-06-06 21:06:04] 2025-06-06 18:10:10,400 | INFO     | pilot is running in a VM
[2025-06-06 21:06:04] 2025-06-06 18:10:10,400 | INFO     | architecture information:
[2025-06-06 21:06:04] 2025-06-06 18:10:10,410 | INFO     | executing command: cat /etc/os-release
[2025-06-06 21:06:04] 2025-06-06 18:10:10,706 | INFO     | cat /etc/os-release:
[2025-06-06 21:06:04] NAME="CentOS Linux"
[2025-06-06 21:06:04] VERSION="7 (Core)"
[2025-06-06 21:06:04] ID="centos"
[2025-06-06 21:06:04] ID_LIKE="rhel fedora"
[2025-06-06 21:06:04] VERSION_ID="7"
[2025-06-06 21:06:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 21:06:04] ANSI_COLOR="0;31"
[2025-06-06 21:06:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 21:06:04] HOME_URL="https://www.centos.org/"
[2025-06-06 21:06:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 21:06:04] 
[2025-06-06 21:06:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 21:06:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 21:06:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 21:06:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 21:06:04] 
[2025-06-06 21:06:04] 2025-06-06 18:10:10,706 | INFO     | **************************************
[2025-06-06 21:06:04] 2025-06-06 18:10:11,210 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-06 21:06:04] 2025-06-06 18:10:11,364 | INFO     | sufficient remaining disk space (498108203008 B)
[2025-06-06 21:06:04] 2025-06-06 18:10:11,364 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 21:06:04] 2025-06-06 18:10:11,364 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 21:06:04] 2025-06-06 18:10:11,364 | INFO     | update_server=False
[2025-06-06 21:06:04] 2025-06-06 18:10:11,364 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 21:06:04] 2025-06-06 18:10:11,644 | INFO     | all job control threads have been joined
[2025-06-06 21:06:04] 2025-06-06 18:10:11,851 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 21:06:04] 2025-06-06 18:10:11,851 | INFO     | aborting loop
[2025-06-06 21:06:04] 2025-06-06 18:10:12,179 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 21:06:04] 2025-06-06 18:10:12,244 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 21:06:04] 2025-06-06 18:10:12,244 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 21:06:04] 2025-06-06 18:10:12,244 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 21:06:04] 2025-06-06 18:10:12,300 | INFO     | all data control threads have been joined
[2025-06-06 21:06:04] 2025-06-06 18:10:12,371 | INFO     | [job] retrieve thread has finished
[2025-06-06 21:06:04] 2025-06-06 18:10:12,398 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 21:06:04] 2025-06-06 18:10:12,444 | INFO     | all payload control threads have been joined
[2025-06-06 21:06:04] 2025-06-06 18:10:12,505 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 21:06:04] 2025-06-06 18:10:12,635 | INFO     | [data] copytool_in thread has finished
[2025-06-06 21:06:04] 2025-06-06 18:10:12,650 | INFO     | [job] control thread has finished
[2025-06-06 21:06:04] 2025-06-06 18:10:12,738 | INFO     | [payload] failed_post thread has finished
[2025-06-06 21:06:04] 2025-06-06 18:10:12,787 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 21:06:04] 2025-06-06 18:10:12,858 | INFO     | [job] job monitor thread has finished
[2025-06-06 21:06:04] 2025-06-06 18:10:12,992 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 21:06:04] 2025-06-06 18:10:13,265 | INFO     | [payload] validate_post thread has finished
[2025-06-06 21:06:04] 2025-06-06 18:10:13,306 | INFO     | [data] control thread has finished
[2025-06-06 21:06:04] 2025-06-06 18:10:13,437 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 21:06:04] 2025-06-06 18:10:13,450 | INFO     | [payload] control thread has finished
[2025-06-06 21:06:04] 2025-06-06 18:10:13,632 | INFO     | [job] validate thread has finished
[2025-06-06 21:06:04] 2025-06-06 18:10:13,735 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 21:06:04] 2025-06-06 18:10:14,186 | INFO     | [data] copytool_out thread has finished
[2025-06-06 21:06:04] 2025-06-06 18:10:14,741 | INFO     | [job] queue monitor thread has finished
[2025-06-06 21:06:04] 2025-06-06 18:10:17,446 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 21:06:04] 2025-06-06 18:10:17,793 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139929543722816)>', '<ExcThread(monitor, started 139928885257984)>']
[2025-06-06 21:06:04] 2025-06-06 18:10:18,281 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 21:06:04] 2025-06-06 18:10:18,281 | INFO     | [monitor] control thread has ended
[2025-06-06 21:06:04] 2025-06-06 18:10:22,819 | INFO     | all workflow threads have been joined
[2025-06-06 21:06:04] 2025-06-06 18:10:22,819 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 21:06:04] 2025-06-06 18:10:22,819 | INFO     | traces error code: 0
[2025-06-06 21:06:04] 2025-06-06 18:10:22,820 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 21:06:04] 2025-06-06 18:10:23,073 [wrapper] ==== pilot stdout END ====
[2025-06-06 21:06:04] 2025-06-06 18:10:23,079 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 21:06:04] 2025-06-06 18:10:23,083 [wrapper] pilotpid: 5319
[2025-06-06 21:06:04] 2025-06-06 18:10:23,086 [wrapper] Pilot exit status: 0
[2025-06-06 21:06:04] 2025-06-06 18:10:23,509 [wrapper] pandaids: 6680059326
[2025-06-06 21:06:04] 2025-06-06 18:10:24,424 [wrapper] cleanup supervisor_pilot  5325 5320
[2025-06-06 21:06:04] 2025-06-06 18:10:24,537 [wrapper] Test setup, not cleaning
[2025-06-06 21:06:04] 2025-06-06 18:10:24,627 [wrapper] apfmon messages muted
[2025-06-06 21:06:04] 2025-06-06 18:10:24,721 [wrapper] ==== wrapper stdout END ====
[2025-06-06 21:06:04] 2025-06-06 18:10:24,842 [wrapper] ==== wrapper stderr END ====
[2025-06-06 21:06:04]  *** Error codes and diagnostics ***
[2025-06-06 21:06:04]     "exeErrorCode": 65,
[2025-06-06 21:06:04]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"ISF_Kernel_FullG4MT_QS                                 4     3   FATAL  Standard std::exception is caught\"",
[2025-06-06 21:06:04]     "pilotErrorCode": 1305,
[2025-06-06 21:06:04]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"ISF_Kernel_FullG4MT_QS                                 4     3   FATAL  Standard st",
[2025-06-06 21:06:04]  *** Listing of results directory ***
[2025-06-06 21:06:04] total 214180
[2025-06-06 21:06:04] -rwx------. 1 boinc boinc     37140 Jun  4 23:19 runpilot2-wrapper.sh
[2025-06-06 21:06:04] -rw-r--r--. 1 boinc boinc      5111 Jun  4 23:19 queuedata.json
[2025-06-06 21:06:04] -rw-r--r--. 1 boinc boinc    495897 Jun  4 23:19 pilot3.tar.gz
[2025-06-06 21:06:04] -rw-r--r--. 1 boinc boinc       100 Jun  6 19:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 21:06:04] -rwxr-xr-x. 1 boinc boinc      7986 Jun  6 19:57 run_atlas
[2025-06-06 21:06:04] -rw-r--r--. 1 boinc boinc       105 Jun  6 19:57 job.xml
[2025-06-06 21:06:04] -rw-r--r--. 1 boinc boinc      6389 Jun  6 19:57 init_data.xml
[2025-06-06 21:06:04] -rw-r--r--. 2 boinc boinc 214802496 Jun  6 19:57 EVNT.45006593._002130.pool.root.1
[2025-06-06 21:06:04] -rw-r--r--. 2 boinc boinc     15093 Jun  6 19:57 start_atlas.sh
[2025-06-06 21:06:04] drwxrwx--x. 2 boinc boinc        68 Jun  6 19:57 shared
[2025-06-06 21:06:04] -rw-r--r--. 2 boinc boinc    508885 Jun  6 19:57 input.tar.gz
[2025-06-06 21:06:04] -rw-r--r--. 1 boinc boinc         0 Jun  6 19:57 boinc_lockfile
[2025-06-06 21:06:04] -rw-r--r--. 1 boinc boinc      2524 Jun  6 19:57 pandaJob.out
[2025-06-06 21:06:04] -rw-------. 1 boinc boinc    985748 Jun  6 19:57 agis_schedconf.cvmfs.json
[2025-06-06 21:06:04] -rw-------. 1 boinc boinc   1598969 Jun  6 19:57 agis_ddmendpoints.agis.ALL.json
[2025-06-06 21:06:04] drwx------. 4 boinc boinc      4096 Jun  6 19:57 pilot3
[2025-06-06 21:06:04] -rw-r--r--. 1 boinc boinc       526 Jun  6 20:06 boinc_task_state.xml
[2025-06-06 21:06:04] -rw-------. 1 boinc boinc      1009 Jun  6 20:06 memory_monitor_summary.json
[2025-06-06 21:06:04] -rw-------. 1 boinc boinc    223334 Jun  6 20:06 log.45006595._056934.job.log.tgz.1
[2025-06-06 21:06:04] -rw-------. 1 boinc boinc        95 Jun  6 20:09 pilot_heartbeat.json
[2025-06-06 21:06:04] -rw-------. 1 boinc boinc     10904 Jun  6 20:10 heartbeat.json
[2025-06-06 21:06:04] -rw-------. 1 boinc boinc      4416 Jun  6 20:10 pilotlog.txt
[2025-06-06 21:06:04] -rw-------. 1 boinc boinc    123738 Jun  6 20:10 log.45006595._056934.job.log.1
[2025-06-06 21:06:04] -rw-------. 1 boinc boinc       188 Jun  6 20:10 output.list
[2025-06-06 21:06:04] -rw-r--r--. 1 boinc boinc       620 Jun  6 20:10 runtime_log
[2025-06-06 21:06:04] -rw-------. 1 boinc boinc    368640 Jun  6 20:10 result.tar.gz
[2025-06-06 21:06:04] -rw-r--r--. 1 boinc boinc      8505 Jun  6 20:10 runtime_log.err
[2025-06-06 21:06:04] -rw-------. 1 boinc boinc       644 Jun  6 20:10 9vRMDmbhAh7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm52nKDmSXp0tn.diag
[2025-06-06 21:06:04] -rw-r--r--. 1 boinc boinc      8192 Jun  6 21:06 boinc_mmap_file
[2025-06-06 21:06:04] -rw-r--r--. 1 boinc boinc        24 Jun  6 21:06 wrapper_checkpoint.txt
[2025-06-06 21:06:04] -rw-r--r--. 1 boinc boinc     21883 Jun  6 21:06 stderr.txt
[2025-06-06 21:06:04] No HITS result produced
[2025-06-06 21:06:04]  *** Contents of shared directory: ***
[2025-06-06 21:06:04] total 210648
[2025-06-06 21:06:04] -rw-r--r--. 2 boinc boinc 214802496 Jun  6 19:57 ATLAS.root_0
[2025-06-06 21:06:04] -rw-r--r--. 2 boinc boinc     15093 Jun  6 19:57 start_atlas.sh
[2025-06-06 21:06:04] -rw-r--r--. 2 boinc boinc    508885 Jun  6 19:57 input.tar.gz
[2025-06-06 21:06:04] -rw-------. 1 boinc boinc    368640 Jun  6 20:10 result.tar.gz
21:06:06 (1353): run_atlas exited; CPU time 788.876037
21:06:06 (1353): called boinc_finish(0)

</stderr_txt>
]]>

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