Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:47:49 (13920): wrapper (7.7.26015): starting
13:47:49 (13920): wrapper: running run_atlas (--nthreads 8)
[2025-06-06 13:47:49] Arguments: --nthreads 8
[2025-06-06 13:47:49] Threads: 8
[2025-06-06 13:47:49] Checking for CVMFS
[2025-06-06 13:47:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 13:47:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 13:47:49] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 13:47:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 13:47:50] 2.11.2.0 2831 38882 75616 146869 2 1 15650050 20275200 1 130560 0 12497543 99.979 7161425 8232 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-06 13:47:50] CVMFS is ok
[2025-06-06 13:47:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 13:47:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 13:47:50] Further information can be found at the LHC@home message board.
[2025-06-06 13:47:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 13:47:50] Checking for apptainer binary...
[2025-06-06 13:47:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 13:47:50] Running /usr/bin/apptainer --version
[2025-06-06 13:47:50] apptainer version 1.3.2-1.el7
[2025-06-06 13:47:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 13:47:51] c-204-40.aglt2.org
[2025-06-06 13:47:51] apptainer works
[2025-06-06 13:47:51] Set ATHENA_PROC_NUMBER=8
[2025-06-06 13:47:51] Set ATHENA_CORE_NUMBER=8
[2025-06-06 13:47:51] Starting ATLAS job with PandaID=6669238629
[2025-06-06 13:47:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:46:19 (6630): wrapper (7.7.26015): starting
15:46:19 (6630): wrapper: running run_atlas (--nthreads 8)
[2025-06-06 15:46:19] Arguments: --nthreads 8
[2025-06-06 15:46:19] Threads: 8
[2025-06-06 15:46:19] This job has been restarted, cleaning up previous attempt
[2025-06-06 15:46:19] Checking for CVMFS
[2025-06-06 15:46:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 15:46:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 15:46:19] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 15:46:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 15:46:19] 2.11.2.0 2831 39000 76256 146873 3 15 15885519 20275201 1 130560 0 12577101 99.979 7234182 8299 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-06 15:46:19] CVMFS is ok
[2025-06-06 15:46:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 15:46:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 15:46:19] Further information can be found at the LHC@home message board.
[2025-06-06 15:46:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 15:46:19] Checking for apptainer binary...
[2025-06-06 15:46:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 15:46:19] Running /usr/bin/apptainer --version
[2025-06-06 15:46:19] apptainer version 1.3.2-1.el7
[2025-06-06 15:46:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 15:46:21] c-204-40.aglt2.org
[2025-06-06 15:46:21] apptainer works
[2025-06-06 15:46:21] Set ATHENA_PROC_NUMBER=8
[2025-06-06 15:46:21] Set ATHENA_CORE_NUMBER=8
[2025-06-06 15:46:21] Starting ATLAS job with PandaID=6669238629
[2025-06-06 15:46:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 18:30:06]  *** The last 200 lines of the pilot log: ***
[2025-06-06 18:30:06] 2025-06-06 22:29:46,346 | INFO     | total number of processed events: 400 (read)
[2025-06-06 18:30:06] 2025-06-06 22:29:46,347 | INFO     | executing command: lscpu
[2025-06-06 18:30:06] 2025-06-06 22:29:46,377 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 18:30:06] 2025-06-06 22:29:47,373 | INFO     | monitor loop #720: job 0:6669238629 is in state 'finished'
[2025-06-06 18:30:06] 2025-06-06 22:29:47,382 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 18:30:06] 2025-06-06 22:29:49,885 | INFO     | monitor loop #721: job 0:6669238629 is in state 'finished'
[2025-06-06 18:30:06] 2025-06-06 22:29:49,886 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 18:30:06] 2025-06-06 22:29:51,921 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-06 18:30:06] 2025-06-06 22:29:51,922 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6669238629/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 18:30:06] 2025-06-06 22:29:51,923 | INFO     | extracted standard info from prmon json
[2025-06-06 18:30:06] 2025-06-06 22:29:51,923 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 18:30:06] 2025-06-06 22:29:51,923 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 18:30:06] 2025-06-06 22:29:51,924 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 18:30:06] 2025-06-06 22:29:51,924 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 18:30:06] 2025-06-06 22:29:51,928 | INFO     | fitting pss+swap vs Time
[2025-06-06 18:30:06] 2025-06-06 22:29:51,929 | INFO     | sum of square deviations: 1270051720.0
[2025-06-06 18:30:06] 2025-06-06 22:29:51,930 | INFO     | sum of deviations: 1155982970.5
[2025-06-06 18:30:06] 2025-06-06 22:29:51,930 | INFO     | mean x: 1749244080.5
[2025-06-06 18:30:06] 2025-06-06 22:29:51,930 | INFO     | mean y: 2515702.40625
[2025-06-06 18:30:06] 2025-06-06 22:29:51,930 | INFO     | -- intersect: -1589621323.5614257
[2025-06-06 18:30:06] 2025-06-06 22:29:51,930 | INFO     | intersect: -1589621323.5614257
[2025-06-06 18:30:06] 2025-06-06 22:29:51,931 | INFO     | chi2: 1.654180118787891
[2025-06-06 18:30:06] 2025-06-06 22:29:51,931 | INFO     | sum of square deviations: 1154663510.0
[2025-06-06 18:30:06] 2025-06-06 22:29:51,932 | INFO     | sum of deviations: 1316324795.0000005
[2025-06-06 18:30:06] 2025-06-06 22:29:51,932 | INFO     | mean x: 1749243928.0
[2025-06-06 18:30:06] 2025-06-06 22:29:51,933 | INFO     | mean y: 2515914.393548387
[2025-06-06 18:30:06] 2025-06-06 22:29:51,933 | INFO     | -- intersect: -1991634879.3122263
[2025-06-06 18:30:06] 2025-06-06 22:29:51,933 | INFO     | intersect: -1991634879.3122263
[2025-06-06 18:30:06] 2025-06-06 22:29:51,933 | INFO     | chi2: 1.6549693259611915
[2025-06-06 18:30:06] 2025-06-06 22:29:51,933 | INFO     | current chi2=1.6549693259611915 (change=-0.04770986933869929 %)
[2025-06-06 18:30:06] 2025-06-06 22:29:51,934 | INFO     | right removable region: 154
[2025-06-06 18:30:06] 2025-06-06 22:29:51,934 | INFO     | sum of square deviations: 1154663510.0
[2025-06-06 18:30:06] 2025-06-06 22:29:51,935 | INFO     | sum of deviations: -23313440184.000008
[2025-06-06 18:30:06] 2025-06-06 22:29:51,935 | INFO     | mean x: 1749244233.0
[2025-06-06 18:30:06] 2025-06-06 22:29:51,935 | INFO     | mean y: 2547573.193548387
[2025-06-06 18:30:06] 2025-06-06 22:29:51,935 | INFO     | -- intersect: 35320976223.6776
[2025-06-06 18:30:06] 2025-06-06 22:29:51,935 | INFO     | intersect: 35320976223.6776
[2025-06-06 18:30:06] 2025-06-06 22:29:51,936 | INFO     | chi2: 0.1434240582497721
[2025-06-06 18:30:06] 2025-06-06 22:29:51,936 | INFO     | current chi2=0.1434240582497721 (change=91.32959847474973 %)
[2025-06-06 18:30:06] 2025-06-06 22:29:51,936 | INFO     | sum of square deviations: 1046484737.5
[2025-06-06 18:30:06] 2025-06-06 22:29:51,937 | INFO     | sum of deviations: -20978220951.5
[2025-06-06 18:30:06] 2025-06-06 22:29:51,937 | INFO     | mean x: 1749244385.5
[2025-06-06 18:30:06] 2025-06-06 22:29:51,938 | INFO     | mean y: 2544224.9266666668
[2025-06-06 18:30:06] 2025-06-06 22:29:51,938 | INFO     | -- intersect: 35068545574.21996
[2025-06-06 18:30:06] 2025-06-06 22:29:51,938 | INFO     | intersect: 35068545574.21996
[2025-06-06 18:30:06] 2025-06-06 22:29:51,938 | INFO     | chi2: 0.1335924961119143
[2025-06-06 18:30:06] 2025-06-06 22:29:51,938 | INFO     | current chi2=0.1335924961119143 (change=6.854890495941915 %)
[2025-06-06 18:30:06] 2025-06-06 22:29:51,938 | INFO     | left removable region: 20
[2025-06-06 18:30:06] 2025-06-06 22:29:51,939 | INFO     | sum of square deviations: 746051197.5
[2025-06-06 18:30:06] 2025-06-06 22:29:51,939 | INFO     | sum of deviations: -10484240525.500002
[2025-06-06 18:30:06] 2025-06-06 22:29:51,939 | INFO     | mean x: 1749244507.5
[2025-06-06 18:30:06] 2025-06-06 22:29:51,940 | INFO     | mean y: 2529439.1268656715
[2025-06-06 18:30:06] 2025-06-06 22:29:51,940 | INFO     | -- intersect: 24584622753.89538
[2025-06-06 18:30:06] 2025-06-06 22:29:51,940 | INFO     | intersect: 24584622753.89538
[2025-06-06 18:30:06] 2025-06-06 22:29:51,940 | INFO     | chi2: 0.098850565139951
[2025-06-06 18:30:06] 2025-06-06 22:29:51,940 | INFO     | -- intersect: 24584622753.89538
[2025-06-06 18:30:06] 2025-06-06 22:29:51,940 | INFO     | current memory leak: -14.05 B/s (using 134 data points, chi2=0.10)
[2025-06-06 18:30:06] 2025-06-06 22:29:51,941 | INFO     | ..............................
[2025-06-06 18:30:06] 2025-06-06 22:29:51,941 | INFO     | . Timing measurements:
[2025-06-06 18:30:06] 2025-06-06 22:29:51,941 | INFO     | . get job = 0 s
[2025-06-06 18:30:06] 2025-06-06 22:29:51,941 | INFO     | . initial setup = 1 s
[2025-06-06 18:30:06] 2025-06-06 22:29:51,941 | INFO     | . payload setup = 12 s
[2025-06-06 18:30:06] 2025-06-06 22:29:51,941 | INFO     | . stage-in = 0 s
[2025-06-06 18:30:06] 2025-06-06 22:29:51,941 | INFO     | . payload execution = 9751 s
[2025-06-06 18:30:06] 2025-06-06 22:29:51,942 | INFO     | . stage-out = 2 s
[2025-06-06 18:30:06] 2025-06-06 22:29:51,942 | INFO     | . log creation = 0 s
[2025-06-06 18:30:06] 2025-06-06 22:29:51,942 | INFO     | ..............................
[2025-06-06 18:30:06] 2025-06-06 22:29:52,034 | INFO     | 
[2025-06-06 18:30:06] 2025-06-06 22:29:52,035 | INFO     | job summary report
[2025-06-06 18:30:06] 2025-06-06 22:29:52,035 | INFO     | --------------------------------------------------
[2025-06-06 18:30:06] 2025-06-06 22:29:52,035 | INFO     | PanDA job id: 6669238629
[2025-06-06 18:30:06] 2025-06-06 22:29:52,035 | INFO     | task id: 44871837
[2025-06-06 18:30:06] 2025-06-06 22:29:52,035 | INFO     | errors: (none)
[2025-06-06 18:30:06] 2025-06-06 22:29:52,036 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 18:30:06] 2025-06-06 22:29:52,036 | INFO     | pilot state: finished 
[2025-06-06 18:30:06] 2025-06-06 22:29:52,036 | INFO     | transexitcode: 0
[2025-06-06 18:30:06] 2025-06-06 22:29:52,036 | INFO     | exeerrorcode: 0
[2025-06-06 18:30:06] 2025-06-06 22:29:52,036 | INFO     | exeerrordiag: 
[2025-06-06 18:30:06] 2025-06-06 22:29:52,036 | INFO     | exitcode: 0
[2025-06-06 18:30:06] 2025-06-06 22:29:52,037 | INFO     | exitmsg: OK
[2025-06-06 18:30:06] 2025-06-06 22:29:52,037 | INFO     | cpuconsumptiontime: 73771 s
[2025-06-06 18:30:06] 2025-06-06 22:29:52,037 | INFO     | nevents: 400
[2025-06-06 18:30:06] 2025-06-06 22:29:52,037 | INFO     | neventsw: 0
[2025-06-06 18:30:06] 2025-06-06 22:29:52,037 | INFO     | pid: 17355
[2025-06-06 18:30:06] 2025-06-06 22:29:52,037 | INFO     | pgrp: 17355
[2025-06-06 18:30:06] 2025-06-06 22:29:52,038 | INFO     | corecount: 8
[2025-06-06 18:30:06] 2025-06-06 22:29:52,038 | INFO     | event service: False
[2025-06-06 18:30:06] 2025-06-06 22:29:52,038 | INFO     | sizes: {0: 2397164, 1: 2397419, 7: 2397625, 12: 2397653, 9767: 2426043, 9768: 2426042, 9772: 2435167, 9773: 2435223, 9779: 2435393}
[2025-06-06 18:30:06] 2025-06-06 22:29:52,038 | INFO     | --------------------------------------------------
[2025-06-06 18:30:06] 2025-06-06 22:29:52,038 | INFO     | 
[2025-06-06 18:30:06] 2025-06-06 22:29:52,038 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-06 18:30:06] 2025-06-06 22:29:52,065 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 18:30:06] 2025-06-06 22:29:52,066 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 18:30:06] 2025-06-06 22:29:52,066 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 18:30:06] 2025-06-06 22:29:52,066 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 18:30:06] 2025-06-06 22:29:52,066 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 18:30:06] 2025-06-06 22:29:52,066 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 18:30:06] 2025-06-06 22:29:52,066 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 18:30:06] 2025-06-06 22:29:52,067 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 18:30:06] 2025-06-06 22:29:52,067 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 18:30:06] 2025-06-06 22:29:52,067 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 18:30:06] 2025-06-06 22:29:52,067 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 18:30:06] 2025-06-06 22:29:52,067 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 18:30:06] 2025-06-06 22:29:52,068 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 18:30:06] 2025-06-06 22:29:52,068 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 18:30:06] 2025-06-06 22:29:52,068 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 18:30:06] 2025-06-06 22:29:52,068 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 18:30:06] 2025-06-06 22:29:52,068 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 18:30:06] 2025-06-06 22:29:52,068 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 18:30:06] 2025-06-06 22:29:52,069 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 18:30:06] 2025-06-06 22:29:52,069 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 18:30:06] 2025-06-06 22:29:52,069 | INFO     | job 6669238629 has completed (purged errors)
[2025-06-06 18:30:06] 2025-06-06 22:29:52,069 | INFO     | overall cleanup function is called
[2025-06-06 18:30:06] 2025-06-06 22:29:53,077 | INFO     | --- collectZombieJob: --- 10, [17355]
[2025-06-06 18:30:06] 2025-06-06 22:29:53,078 | INFO     | zombie collector waiting for pid 17355
[2025-06-06 18:30:06] 2025-06-06 22:29:53,078 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 18:30:06] 2025-06-06 22:29:53,078 | INFO     | collected zombie processes
[2025-06-06 18:30:06] 2025-06-06 22:29:53,078 | INFO     | will attempt to kill all subprocesses of pid=17355
[2025-06-06 18:30:06] 2025-06-06 22:29:53,168 | INFO     | process IDs to be killed: [17355] (in reverse order)
[2025-06-06 18:30:06] 2025-06-06 22:29:53,222 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 18:30:06] 2025-06-06 22:29:53,222 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 18:30:06] 2025-06-06 22:29:53,227 | INFO     | did not find any defunct processes belonging to 17355
[2025-06-06 18:30:06] 2025-06-06 22:29:53,229 | INFO     | did not find any defunct processes belonging to 17355
[2025-06-06 18:30:06] 2025-06-06 22:29:53,230 | INFO     | ready for new job
[2025-06-06 18:30:06] 2025-06-06 22:29:53,230 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 18:30:06] 2025-06-06 22:29:53,231 | INFO     | **************************************
[2025-06-06 18:30:06] 2025-06-06 22:29:53,231 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 18:30:06] 2025-06-06 22:29:53,231 | INFO     | **************************************
[2025-06-06 18:30:06] 2025-06-06 22:29:53,231 | INFO     | 
[2025-06-06 18:30:06] 2025-06-06 22:29:53,232 | INFO     | architecture information:
[2025-06-06 18:30:06] 2025-06-06 22:29:53,232 | INFO     | executing command: cat /etc/os-release
[2025-06-06 18:30:06] 2025-06-06 22:29:53,250 | INFO     | cat /etc/os-release:
[2025-06-06 18:30:06] NAME="CentOS Linux"
[2025-06-06 18:30:06] VERSION="7 (Core)"
[2025-06-06 18:30:06] ID="centos"
[2025-06-06 18:30:06] ID_LIKE="rhel fedora"
[2025-06-06 18:30:06] VERSION_ID="7"
[2025-06-06 18:30:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 18:30:06] ANSI_COLOR="0;31"
[2025-06-06 18:30:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 18:30:06] HOME_URL="https://www.centos.org/"
[2025-06-06 18:30:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 18:30:06] 
[2025-06-06 18:30:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 18:30:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 18:30:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 18:30:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 18:30:06] 
[2025-06-06 18:30:06] 2025-06-06 22:29:53,250 | INFO     | **************************************
[2025-06-06 18:30:06] 2025-06-06 22:29:53,753 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-06 18:30:06] 2025-06-06 22:29:53,771 | INFO     | sufficient remaining disk space (18572378112 B)
[2025-06-06 18:30:06] 2025-06-06 22:29:53,771 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 18:30:06] 2025-06-06 22:29:53,772 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 18:30:06] 2025-06-06 22:29:53,772 | INFO     | update_server=False
[2025-06-06 18:30:06] 2025-06-06 22:29:53,772 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 18:30:06] 2025-06-06 22:29:53,772 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 18:30:06] 2025-06-06 22:29:53,773 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 18:30:06] 2025-06-06 22:29:53,773 | INFO     | aborting loop
[2025-06-06 18:30:06] 2025-06-06 22:29:53,891 | INFO     | PID=10329 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-06 18:30:06] 2025-06-06 22:29:53,892 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 18:30:06] 2025-06-06 22:29:53,892 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 18:30:06] 2025-06-06 22:29:53,892 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 18:30:06] 2025-06-06 22:29:54,043 | INFO     | all payload control threads have been joined
[2025-06-06 18:30:06] 2025-06-06 22:29:54,718 | INFO     | all data control threads have been joined
[2025-06-06 18:30:06] 2025-06-06 22:29:54,778 | INFO     | [job] queue monitor thread has finished
[2025-06-06 18:30:06] 2025-06-06 22:29:54,778 | INFO     | [job] retrieve thread has finished
[2025-06-06 18:30:06] 2025-06-06 22:29:54,779 | INFO     | [job] job monitor thread has finished
[2025-06-06 18:30:06] 2025-06-06 22:29:55,049 | INFO     | [payload] control thread has finished
[2025-06-06 18:30:06] 2025-06-06 22:29:55,108 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 18:30:06] 2025-06-06 22:29:55,116 | INFO     | all job control threads have been joined
[2025-06-06 18:30:06] 2025-06-06 22:29:55,316 | INFO     | [payload] failed_post thread has finished
[2025-06-06 18:30:06] 2025-06-06 22:29:55,385 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 18:30:06] 2025-06-06 22:29:55,723 | INFO     | [data] control thread has finished
[2025-06-06 18:30:06] 2025-06-06 22:29:56,023 | INFO     | [job] validate thread has finished
[2025-06-06 18:30:06] 2025-06-06 22:29:56,121 | INFO     | [job] control thread has finished
[2025-06-06 18:30:06] 2025-06-06 22:29:56,149 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 18:30:06] 2025-06-06 22:29:56,192 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 18:30:06] 2025-06-06 22:29:56,203 | INFO     | [data] copytool_in thread has finished
[2025-06-06 18:30:06] 2025-06-06 22:29:56,216 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 18:30:06] 2025-06-06 22:29:56,298 | INFO     | [payload] validate_post thread has finished
[2025-06-06 18:30:06] 2025-06-06 22:29:56,782 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 18:30:06] 2025-06-06 22:29:57,113 | INFO     | [data] copytool_out thread has finished
[2025-06-06 18:30:06] 2025-06-06 22:30:00,788 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 18:30:06] 2025-06-06 22:30:01,166 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139787926427456)>', '<ExcThread(monitor, started 139786731898624)>']
[2025-06-06 18:30:06] 2025-06-06 22:30:01,930 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 18:30:06] 2025-06-06 22:30:01,930 | INFO     | [monitor] control thread has ended
[2025-06-06 18:30:06] 2025-06-06 22:30:06,191 | INFO     | all workflow threads have been joined
[2025-06-06 18:30:06] 2025-06-06 22:30:06,191 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 18:30:06] 2025-06-06 22:30:06,192 | INFO     | traces error code: 0
[2025-06-06 18:30:06] 2025-06-06 22:30:06,192 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 18:30:06] 2025-06-06 22:30:06,300 [wrapper] ==== pilot stdout END ====
[2025-06-06 18:30:06] 2025-06-06 22:30:06,304 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 18:30:06] 2025-06-06 22:30:06,309 [wrapper] pilotpid: 10329
[2025-06-06 18:30:06] 2025-06-06 22:30:06,313 [wrapper] Pilot exit status: 0
[2025-06-06 18:30:06] 2025-06-06 22:30:06,333 [wrapper] pandaids: 6669238629 6669238629
[2025-06-06 18:30:06] 2025-06-06 22:30:06,375 [wrapper] cleanup supervisor_pilot 23325 10330
[2025-06-06 18:30:06] 2025-06-06 22:30:06,379 [wrapper] Test setup, not cleaning
[2025-06-06 18:30:06] 2025-06-06 22:30:06,384 [wrapper] apfmon messages muted
[2025-06-06 18:30:06] 2025-06-06 22:30:06,389 [wrapper] ==== wrapper stdout END ====
[2025-06-06 18:30:06] 2025-06-06 22:30:06,394 [wrapper] ==== wrapper stderr END ====
[2025-06-06 18:30:06]  *** Error codes and diagnostics ***
[2025-06-06 18:30:06]     "exeErrorCode": 0,
[2025-06-06 18:30:06]     "exeErrorDiag": "",
[2025-06-06 18:30:06]     "pilotErrorCode": 0,
[2025-06-06 18:30:06]     "pilotErrorDiag": "",
[2025-06-06 18:30:06]  *** Listing of results directory ***
[2025-06-06 18:30:06] total 638256
[2025-06-06 18:30:06] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-06-06 18:30:06] -rw-r--r-- 1 boincer umatlas    495897 May 29 00:11 pilot3.tar.gz
[2025-06-06 18:30:06] -rwx------ 1 boincer umatlas     37140 May 29 00:55 runpilot2-wrapper.sh
[2025-06-06 18:30:06] -rw-r--r-- 1 boincer umatlas      5111 May 29 00:55 queuedata.json
[2025-06-06 18:30:06] -rw-r--r-- 1 boincer umatlas       100 Jun  6 13:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 18:30:06] -rwxr-xr-x 1 boincer umatlas      7986 Jun  6 13:47 run_atlas
[2025-06-06 18:30:06] -rw-r--r-- 1 boincer umatlas       105 Jun  6 13:47 job.xml
[2025-06-06 18:30:06] -rw-r--r-- 3 boincer umatlas 223912544 Jun  6 13:47 EVNT.44871834._003743.pool.root.1
[2025-06-06 18:30:06] -rw-r--r-- 3 boincer umatlas 223912544 Jun  6 13:47 ATLAS.root_0
[2025-06-06 18:30:06] -rw-r--r-- 2 boincer umatlas     15093 Jun  6 13:47 start_atlas.sh
[2025-06-06 18:30:06] drwxrwx--x 2 boincer umatlas      4096 Jun  6 13:47 shared
[2025-06-06 18:30:06] -rw-r--r-- 2 boincer umatlas    508876 Jun  6 13:47 input.tar.gz
[2025-06-06 18:30:06] -rw-r--r-- 1 boincer umatlas         0 Jun  6 13:47 boinc_lockfile
[2025-06-06 18:30:06] -rw-r--r-- 1 boincer umatlas      2558 Jun  6 15:46 pandaJob.out
[2025-06-06 18:30:06] -rw------- 1 boincer umatlas    985748 Jun  6 15:46 agis_schedconf.cvmfs.json
[2025-06-06 18:30:06] -rw-r--r-- 1 boincer umatlas      5906 Jun  6 18:28 init_data.xml
[2025-06-06 18:30:06] -rw------- 1 boincer umatlas        96 Jun  6 18:28 pilot_heartbeat.json
[2025-06-06 18:30:06] -rw------- 1 boincer umatlas 199446791 Jun  6 18:29 HITS.44871837._095312.pool.root.1
[2025-06-06 18:30:06] -rw-r--r-- 1 boincer umatlas       532 Jun  6 18:29 boinc_task_state.xml
[2025-06-06 18:30:06] -rw------- 1 boincer umatlas      1049 Jun  6 18:29 memory_monitor_summary.json
[2025-06-06 18:30:06] -rw------- 1 boincer umatlas   1598969 Jun  6 18:29 agis_ddmendpoints.agis.ALL.json
[2025-06-06 18:30:06] -rw------- 1 boincer umatlas    351447 Jun  6 18:29 log.44871837._095312.job.log.tgz.1
[2025-06-06 18:30:06] -rw------- 1 boincer umatlas      7746 Jun  6 18:29 heartbeat.json
[2025-06-06 18:30:06] -rw-r--r-- 1 boincer umatlas      8192 Jun  6 18:29 boinc_mmap_file
[2025-06-06 18:30:06] -rw-r--r-- 1 boincer umatlas        29 Jun  6 18:29 wrapper_checkpoint.txt
[2025-06-06 18:30:06] -rw------- 1 boincer umatlas      4670 Jun  6 18:30 pilotlog.txt
[2025-06-06 18:30:06] -rw------- 1 boincer umatlas    879218 Jun  6 18:30 log.44871837._095312.job.log.1
[2025-06-06 18:30:06] -rw------- 1 boincer umatlas       357 Jun  6 18:30 output.list
[2025-06-06 18:30:06] -rw-r--r-- 1 boincer umatlas       620 Jun  6 18:30 runtime_log
[2025-06-06 18:30:06] -rw------- 1 boincer umatlas   1249280 Jun  6 18:30 result.tar.gz
[2025-06-06 18:30:06] -rw------- 1 boincer umatlas       786 Jun  6 18:30 YVFKDmSTke7n9Rq4apOajLDm4fhM0noT9bVof3QYDmbgUKDmEQ3hzm.diag
[2025-06-06 18:30:06] -rw-r--r-- 1 boincer umatlas      8744 Jun  6 18:30 runtime_log.err
[2025-06-06 18:30:06] -rw-r--r-- 1 boincer umatlas     23341 Jun  6 18:30 stderr.txt
[2025-06-06 18:30:06] HITS file was successfully produced:
[2025-06-06 18:30:06] -rw------- 1 boincer umatlas 199446791 Jun  6 18:29 shared/HITS.pool.root.1
[2025-06-06 18:30:06]  *** Contents of shared directory: ***
[2025-06-06 18:30:06] total 415188
[2025-06-06 18:30:06] -rw-r--r-- 3 boincer umatlas 223912544 Jun  6 13:47 ATLAS.root_0
[2025-06-06 18:30:06] -rw-r--r-- 2 boincer umatlas     15093 Jun  6 13:47 start_atlas.sh
[2025-06-06 18:30:06] -rw-r--r-- 2 boincer umatlas    508876 Jun  6 13:47 input.tar.gz
[2025-06-06 18:30:06] -rw------- 1 boincer umatlas 199446791 Jun  6 18:29 HITS.pool.root.1
[2025-06-06 18:30:06] -rw------- 1 boincer umatlas   1249280 Jun  6 18:30 result.tar.gz
18:30:07 (6630): run_atlas exited; CPU time 73722.576346
18:30:07 (6630): called boinc_finish(0)

</stderr_txt>
]]>

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