Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:37:30 (801278): wrapper (7.7.26015): starting
14:37:30 (801278): wrapper: running run_atlas (--nthreads 12)
[2025-06-06 14:37:30] Arguments: --nthreads 12
[2025-06-06 14:37:30] Threads: 12
[2025-06-06 14:37:30] Checking for CVMFS
[2025-06-06 14:37:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 14:37:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 14:37:30] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 14:37:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 14:37:30] 2.12.6.0 5825 4588 198820 146872 0 316 39343428 40960001 9934 16776704 0 16651992 99.938 3059536 38452 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-06 14:37:30] CVMFS is ok
[2025-06-06 14:37:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 14:37:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 14:37:30] Further information can be found at the LHC@home message board.
[2025-06-06 14:37:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 14:37:30] Checking for apptainer binary...
[2025-06-06 14:37:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 14:37:30] Running /usr/bin/apptainer --version
[2025-06-06 14:37:30] apptainer version 1.4.1-1.el9
[2025-06-06 14:37:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 14:37:30] c6-8-12-4.aglt2.org
[2025-06-06 14:37:30] apptainer works
[2025-06-06 14:37:30] Set ATHENA_PROC_NUMBER=12
[2025-06-06 14:37:30] Set ATHENA_CORE_NUMBER=12
[2025-06-06 14:37:30] Starting ATLAS job with PandaID=6668439306
[2025-06-06 14:37:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 16:13:35]  *** The last 200 lines of the pilot log: ***
[2025-06-06 16:13:35]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6668439306/log.44871837._083642.job.log.tgz.1
[2025-06-06 16:13:35]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/47/12/log.44871837._083642.job.log.tgz.1
[2025-06-06 16:13:35]  workdir=None
[2025-06-06 16:13:35] ]
[2025-06-06 16:13:35] 2025-06-06 20:12:53,723 | INFO     | transferring file log.44871837._083642.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6668439306/log.44871837._083642.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-06 16:13:35] 2025-06-06 20:12:53,723 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6668439306/log.44871837._083642.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._083642.job
[2025-06-06 16:13:35] 2025-06-06 20:12:53,740 | INFO     | adding to output.list: log.44871837._083642.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/47/12/log.44871837._083642.job.log.tg
[2025-06-06 16:13:35] 2025-06-06 20:12:53,741 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 16:13:35] 2025-06-06 20:12:53,742 | INFO     | summary of transferred files:
[2025-06-06 16:13:35] 2025-06-06 20:12:53,742 | INFO     |  -- lfn=log.44871837._083642.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 16:13:35] 2025-06-06 20:12:53,742 | INFO     | stage-out finished correctly
[2025-06-06 16:13:35] 2025-06-06 20:12:55,692 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 16:13:35] 2025-06-06 20:12:58,251 | INFO     | job 6668439306 has state=finished
[2025-06-06 16:13:35] 2025-06-06 20:12:58,251 | INFO     | preparing for final server update for job 6668439306 in state='finished'
[2025-06-06 16:13:35] 2025-06-06 20:12:58,310 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-06 16:13:35] 2025-06-06 20:12:58,310 | INFO     | this job has now completed (state=finished)
[2025-06-06 16:13:35] 2025-06-06 20:12:58,310 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 16:13:35] 2025-06-06 20:12:58,310 | INFO     | log transfer has been attempted: DONE
[2025-06-06 16:13:35] 2025-06-06 20:12:58,310 | INFO     | job 6668439306 has finished - writing final server update
[2025-06-06 16:13:35] 2025-06-06 20:12:58,311 | INFO     | total number of processed events: 400 (read)
[2025-06-06 16:13:35] 2025-06-06 20:12:58,311 | INFO     | executing command: lscpu
[2025-06-06 16:13:35] 2025-06-06 20:12:58,358 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 16:13:35] 2025-06-06 20:12:58,790 | WARNING  | process 811787 can no longer be monitored (due to stat problems) - aborting
[2025-06-06 16:13:35] 2025-06-06 20:12:58,791 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668439306/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 16:13:35] 2025-06-06 20:12:58,792 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668439306/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 16:13:35] 2025-06-06 20:12:58,793 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3759499 B
[2025-06-06 16:13:35] 2025-06-06 20:12:58,793 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15787 B
[2025-06-06 16:13:35] 2025-06-06 20:12:58,793 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-06 16:13:35] 2025-06-06 20:13:02,135 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-06 16:13:35] 2025-06-06 20:13:02,149 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2999.6668035714288
[2025-06-06 16:13:35] 2025-06-06 20:13:02,150 | INFO     | sufficient remaining disk space (56484691968 B)
[2025-06-06 16:13:35] 2025-06-06 20:13:02,151 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-06 16:13:35] 2025-06-06 20:13:02,158 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6668439306: 4092116 B (within 2537553920 B limit)
[2025-06-06 16:13:35] 2025-06-06 20:13:02,162 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6668439306/HITS.44871837._083642.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-06 16:13:35] 2025-06-06 20:13:02,162 | INFO     | total size of present files: 0 B (workdir size: 4092116 B)
[2025-06-06 16:13:35] 2025-06-06 20:13:02,162 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6668439306/HITS.44871837._083642.pool.root.1 since it does not exist
[2025-06-06 16:13:35] 2025-06-06 20:13:02,170 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668439306/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 16:13:35] 2025-06-06 20:13:02,171 | INFO     | extracted standard info from prmon json
[2025-06-06 16:13:35] 2025-06-06 20:13:02,171 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 16:13:35] 2025-06-06 20:13:02,171 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 16:13:35] 2025-06-06 20:13:02,172 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 16:13:35] 2025-06-06 20:13:02,172 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 16:13:35] 2025-06-06 20:13:02,175 | INFO     | fitting pss+swap vs Time
[2025-06-06 16:13:35] 2025-06-06 20:13:02,175 | INFO     | sum of square deviations: 204157729.95402288
[2025-06-06 16:13:35] 2025-06-06 20:13:02,176 | INFO     | sum of deviations: -16761540399.528736
[2025-06-06 16:13:35] 2025-06-06 20:13:02,176 | INFO     | mean x: 1749238015.0229886
[2025-06-06 16:13:35] 2025-06-06 20:13:02,176 | INFO     | mean y: 2507964.264367816
[2025-06-06 16:13:35] 2025-06-06 20:13:02,176 | INFO     | -- intersect: 143616583531.24014
[2025-06-06 16:13:35] 2025-06-06 20:13:02,176 | INFO     | intersect: 143616583531.24014
[2025-06-06 16:13:35] 2025-06-06 20:13:02,176 | INFO     | chi2: 0.2524687756336433
[2025-06-06 16:13:35] 2025-06-06 20:13:02,177 | INFO     | -- intersect: 143616583531.24014
[2025-06-06 16:13:35] 2025-06-06 20:13:02,177 | INFO     | current memory leak: -82.10 B/s (using 87 data points, chi2=0.25)
[2025-06-06 16:13:35] 2025-06-06 20:13:02,177 | INFO     | could have reported an average CPU frequency of 3013 MHz (7 samples)
[2025-06-06 16:13:35] 2025-06-06 20:13:02,177 | INFO     | ..............................
[2025-06-06 16:13:35] 2025-06-06 20:13:02,178 | INFO     | . Timing measurements:
[2025-06-06 16:13:35] 2025-06-06 20:13:02,178 | INFO     | . get job = 0 s
[2025-06-06 16:13:35] 2025-06-06 20:13:02,178 | INFO     | . initial setup = 3 s
[2025-06-06 16:13:35] 2025-06-06 20:13:02,178 | INFO     | . payload setup = 6 s
[2025-06-06 16:13:35] 2025-06-06 20:13:02,178 | INFO     | . stage-in = 0 s
[2025-06-06 16:13:35] 2025-06-06 20:13:02,178 | INFO     | . payload execution = 5686 s
[2025-06-06 16:13:35] 2025-06-06 20:13:02,178 | INFO     | . stage-out = 0 s
[2025-06-06 16:13:35] 2025-06-06 20:13:02,179 | INFO     | . log creation = 0 s
[2025-06-06 16:13:35] 2025-06-06 20:13:02,179 | INFO     | ..............................
[2025-06-06 16:13:35] 2025-06-06 20:13:02,320 | INFO     | 
[2025-06-06 16:13:35] 2025-06-06 20:13:02,320 | INFO     | job summary report
[2025-06-06 16:13:35] 2025-06-06 20:13:02,320 | INFO     | --------------------------------------------------
[2025-06-06 16:13:35] 2025-06-06 20:13:02,320 | INFO     | PanDA job id: 6668439306
[2025-06-06 16:13:35] 2025-06-06 20:13:02,320 | INFO     | task id: 44871837
[2025-06-06 16:13:35] 2025-06-06 20:13:02,320 | INFO     | errors: (none)
[2025-06-06 16:13:35] 2025-06-06 20:13:02,320 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 16:13:35] 2025-06-06 20:13:02,320 | INFO     | pilot state: finished 
[2025-06-06 16:13:35] 2025-06-06 20:13:02,320 | INFO     | transexitcode: 0
[2025-06-06 16:13:35] 2025-06-06 20:13:02,320 | INFO     | exeerrorcode: 0
[2025-06-06 16:13:35] 2025-06-06 20:13:02,321 | INFO     | exeerrordiag: 
[2025-06-06 16:13:35] 2025-06-06 20:13:02,321 | INFO     | exitcode: 0
[2025-06-06 16:13:35] 2025-06-06 20:13:02,321 | INFO     | exitmsg: OK
[2025-06-06 16:13:35] 2025-06-06 20:13:02,321 | INFO     | cpuconsumptiontime: 48074 s
[2025-06-06 16:13:35] 2025-06-06 20:13:02,321 | INFO     | nevents: 400
[2025-06-06 16:13:35] 2025-06-06 20:13:02,321 | INFO     | neventsw: 0
[2025-06-06 16:13:35] 2025-06-06 20:13:02,321 | INFO     | pid: 811787
[2025-06-06 16:13:35] 2025-06-06 20:13:02,321 | INFO     | pgrp: 811787
[2025-06-06 16:13:35] 2025-06-06 20:13:02,321 | INFO     | corecount: 12
[2025-06-06 16:13:35] 2025-06-06 20:13:02,321 | INFO     | event service: False
[2025-06-06 16:13:35] 2025-06-06 20:13:02,321 | INFO     | sizes: {0: 2396903, 1: 2397759, 5: 2398021, 12: 2398077, 5696: 2424783, 5697: 2433724, 5699: 2433908, 5705: 2434130}
[2025-06-06 16:13:35] 2025-06-06 20:13:02,321 | INFO     | --------------------------------------------------
[2025-06-06 16:13:35] 2025-06-06 20:13:02,321 | INFO     | 
[2025-06-06 16:13:35] 2025-06-06 20:13:02,321 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-06 16:13:35] 2025-06-06 20:13:02,341 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 16:13:35] 2025-06-06 20:13:02,342 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 16:13:35] 2025-06-06 20:13:02,342 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 16:13:35] 2025-06-06 20:13:02,342 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 16:13:35] 2025-06-06 20:13:02,342 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 16:13:35] 2025-06-06 20:13:02,342 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 16:13:35] 2025-06-06 20:13:02,342 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 16:13:35] 2025-06-06 20:13:02,342 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 16:13:35] 2025-06-06 20:13:02,342 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 16:13:35] 2025-06-06 20:13:02,342 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 16:13:35] 2025-06-06 20:13:02,343 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 16:13:35] 2025-06-06 20:13:02,343 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 16:13:35] 2025-06-06 20:13:02,343 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 16:13:35] 2025-06-06 20:13:02,343 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 16:13:35] 2025-06-06 20:13:02,343 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 16:13:35] 2025-06-06 20:13:02,343 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 16:13:35] 2025-06-06 20:13:02,343 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 16:13:35] 2025-06-06 20:13:02,343 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 16:13:35] 2025-06-06 20:13:02,343 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 16:13:35] 2025-06-06 20:13:02,344 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 16:13:35] 2025-06-06 20:13:02,344 | INFO     | job 6668439306 has completed (purged errors)
[2025-06-06 16:13:35] 2025-06-06 20:13:02,344 | INFO     | overall cleanup function is called
[2025-06-06 16:13:35] 2025-06-06 20:13:02,509 | INFO     | number of running child processes to parent process 811787: 1
[2025-06-06 16:13:35] 2025-06-06 20:13:02,509 | INFO     | maximum number of monitored processes: 6
[2025-06-06 16:13:35] 2025-06-06 20:13:02,509 | INFO     | aborting job monitoring since job object (job id=6668439306) has expired
[2025-06-06 16:13:35] 2025-06-06 20:13:03,352 | INFO     | --- collectZombieJob: --- 10, [811787]
[2025-06-06 16:13:35] 2025-06-06 20:13:03,352 | INFO     | zombie collector waiting for pid 811787
[2025-06-06 16:13:35] 2025-06-06 20:13:03,352 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 16:13:35] 2025-06-06 20:13:03,352 | INFO     | collected zombie processes
[2025-06-06 16:13:35] 2025-06-06 20:13:03,352 | INFO     | will attempt to kill all subprocesses of pid=811787
[2025-06-06 16:13:35] 2025-06-06 20:13:03,561 | INFO     | process IDs to be killed: [811787] (in reverse order)
[2025-06-06 16:13:35] 2025-06-06 20:13:03,641 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 16:13:35] 2025-06-06 20:13:03,644 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 16:13:35] 2025-06-06 20:13:03,654 | INFO     | did not find any defunct processes belonging to 811787
[2025-06-06 16:13:35] 2025-06-06 20:13:03,662 | INFO     | did not find any defunct processes belonging to 811787
[2025-06-06 16:13:35] 2025-06-06 20:13:03,662 | INFO     | ready for new job
[2025-06-06 16:13:35] 2025-06-06 20:13:03,662 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 16:13:35] 2025-06-06 20:13:03,664 | INFO     | ***************************************
[2025-06-06 16:13:35] 2025-06-06 20:13:03,665 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-06 16:13:35] 2025-06-06 20:13:03,665 | INFO     | ***************************************
[2025-06-06 16:13:35] 2025-06-06 20:13:03,665 | INFO     | 
[2025-06-06 16:13:35] 2025-06-06 20:13:03,681 | INFO     | architecture information:
[2025-06-06 16:13:35] 2025-06-06 20:13:03,681 | INFO     | executing command: cat /etc/os-release
[2025-06-06 16:13:35] 2025-06-06 20:13:03,696 | INFO     | cat /etc/os-release:
[2025-06-06 16:13:35] NAME="CentOS Linux"
[2025-06-06 16:13:35] VERSION="7 (Core)"
[2025-06-06 16:13:35] ID="centos"
[2025-06-06 16:13:35] ID_LIKE="rhel fedora"
[2025-06-06 16:13:35] VERSION_ID="7"
[2025-06-06 16:13:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 16:13:35] ANSI_COLOR="0;31"
[2025-06-06 16:13:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 16:13:35] HOME_URL="https://www.centos.org/"
[2025-06-06 16:13:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 16:13:35] 
[2025-06-06 16:13:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 16:13:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 16:13:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 16:13:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 16:13:35] 
[2025-06-06 16:13:35] 2025-06-06 20:13:03,697 | INFO     | ***************************************
[2025-06-06 16:13:35] 2025-06-06 20:13:04,199 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-06 16:13:35] 2025-06-06 20:13:04,216 | INFO     | sufficient remaining disk space (56489934848 B)
[2025-06-06 16:13:35] 2025-06-06 20:13:04,216 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 16:13:35] 2025-06-06 20:13:04,217 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 16:13:35] 2025-06-06 20:13:04,217 | INFO     | update_server=False
[2025-06-06 16:13:35] 2025-06-06 20:13:04,217 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 16:13:35] 2025-06-06 20:13:04,217 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 16:13:35] 2025-06-06 20:13:04,217 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 16:13:35] 2025-06-06 20:13:04,218 | INFO     | aborting loop
[2025-06-06 16:13:35] 2025-06-06 20:13:04,354 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 16:13:35] 2025-06-06 20:13:04,462 | INFO     | all job control threads have been joined
[2025-06-06 16:13:35] 2025-06-06 20:13:04,751 | INFO     | all data control threads have been joined
[2025-06-06 16:13:35] 2025-06-06 20:13:04,958 | INFO     | all payload control threads have been joined
[2025-06-06 16:13:35] 2025-06-06 20:13:05,222 | INFO     | [job] retrieve thread has finished
[2025-06-06 16:13:35] 2025-06-06 20:13:05,222 | INFO     | [job] queue monitor thread has finished
[2025-06-06 16:13:35] 2025-06-06 20:13:05,223 | INFO     | [job] job monitor thread has finished
[2025-06-06 16:13:35] 2025-06-06 20:13:05,468 | INFO     | [job] control thread has finished
[2025-06-06 16:13:35] 2025-06-06 20:13:05,572 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 16:13:35] 2025-06-06 20:13:05,756 | INFO     | [data] control thread has finished
[2025-06-06 16:13:35] 2025-06-06 20:13:05,764 | INFO     | [data] copytool_in thread has finished
[2025-06-06 16:13:35] 2025-06-06 20:13:05,792 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 16:13:35] 2025-06-06 20:13:05,820 | INFO     | [job] validate thread has finished
[2025-06-06 16:13:35] 2025-06-06 20:13:05,893 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 16:13:35] 2025-06-06 20:13:05,923 | INFO     | [payload] failed_post thread has finished
[2025-06-06 16:13:35] 2025-06-06 20:13:05,963 | INFO     | [payload] control thread has finished
[2025-06-06 16:13:35] 2025-06-06 20:13:06,094 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 16:13:35] 2025-06-06 20:13:06,290 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 16:13:35] 2025-06-06 20:13:06,359 | INFO     | [data] copytool_out thread has finished
[2025-06-06 16:13:35] 2025-06-06 20:13:06,473 | INFO     | [payload] validate_post thread has finished
[2025-06-06 16:13:35] 2025-06-06 20:13:10,297 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 16:13:35] 2025-06-06 20:13:11,285 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139625966626624)>', '<ExcThread(monitor, started 139625309902592)>']
[2025-06-06 16:13:35] 2025-06-06 20:13:16,310 | INFO     | all workflow threads have been joined
[2025-06-06 16:13:35] 2025-06-06 20:13:16,310 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 16:13:35] 2025-06-06 20:13:16,311 | INFO     | traces error code: 0
[2025-06-06 16:13:35] 2025-06-06 20:13:16,311 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 16:13:35] 2025-06-06 20:13:35,358 | INFO     | PID=804847 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-06 16:13:35] 2025-06-06 20:13:35,359 | INFO     | .. there are 8 such processes running
[2025-06-06 16:13:35] 2025-06-06 20:13:35,359 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 16:13:35] 2025-06-06 20:13:35,360 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 16:13:35] 2025-06-06 20:13:35,360 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 16:13:35] 2025-06-06 20:13:35,360 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 16:13:35] 2025-06-06 20:13:35,360 | INFO     | [monitor] control thread has ended
[2025-06-06 16:13:35] 2025-06-06 20:13:35,518 [wrapper] ==== pilot stdout END ====
[2025-06-06 16:13:35] 2025-06-06 20:13:35,521 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 16:13:35] 2025-06-06 20:13:35,523 [wrapper] pilotpid: 804847
[2025-06-06 16:13:35] 2025-06-06 20:13:35,525 [wrapper] Pilot exit status: 0
[2025-06-06 16:13:35] 2025-06-06 20:13:35,535 [wrapper] pandaids: 6668439306
[2025-06-06 16:13:35] 2025-06-06 20:13:35,581 [wrapper] cleanup supervisor_pilot  952626 804848
[2025-06-06 16:13:35] 2025-06-06 20:13:35,583 [wrapper] Test setup, not cleaning
[2025-06-06 16:13:35] 2025-06-06 20:13:35,585 [wrapper] apfmon messages muted
[2025-06-06 16:13:35] 2025-06-06 20:13:35,588 [wrapper] ==== wrapper stdout END ====
[2025-06-06 16:13:35] 2025-06-06 20:13:35,591 [wrapper] ==== wrapper stderr END ====
[2025-06-06 16:13:35]  *** Error codes and diagnostics ***
[2025-06-06 16:13:35]     "exeErrorCode": 0,
[2025-06-06 16:13:35]     "exeErrorDiag": "",
[2025-06-06 16:13:35]     "pilotErrorCode": 0,
[2025-06-06 16:13:35]     "pilotErrorDiag": "",
[2025-06-06 16:13:35]  *** Listing of results directory ***
[2025-06-06 16:13:35] total 418136
[2025-06-06 16:13:35] -rw-r--r--. 1 boincer umatlas    529402 Jun  6 13:13 pilot3.tar.gz
[2025-06-06 16:13:35] -rwx------. 1 boincer umatlas     37140 Jun  6 13:28 runpilot2-wrapper.sh
[2025-06-06 16:13:35] -rw-r--r--. 1 boincer umatlas      5112 Jun  6 13:28 queuedata.json
[2025-06-06 16:13:35] -rw-r--r--. 1 boincer umatlas       100 Jun  6 14:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 16:13:35] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  6 14:37 run_atlas
[2025-06-06 16:13:35] -rw-r--r--. 1 boincer umatlas       105 Jun  6 14:37 job.xml
[2025-06-06 16:13:35] -rw-r--r--. 2 boincer umatlas 223933503 Jun  6 14:37 EVNT.44871834._003263.pool.root.1
[2025-06-06 16:13:35] -rw-r--r--. 2 boincer umatlas    541897 Jun  6 14:37 input.tar.gz
[2025-06-06 16:13:35] -rw-r--r--. 2 boincer umatlas     15095 Jun  6 14:37 start_atlas.sh
[2025-06-06 16:13:35] drwxrwx--x. 2 boincer umatlas      4096 Jun  6 14:37 shared
[2025-06-06 16:13:35] -rw-r--r--. 1 boincer umatlas         0 Jun  6 14:37 boinc_lockfile
[2025-06-06 16:13:35] -rw-r--r--. 1 boincer umatlas      2558 Jun  6 14:37 pandaJob.out
[2025-06-06 16:13:35] -rw-------. 1 boincer umatlas    985756 Jun  6 14:37 agis_schedconf.cvmfs.json
[2025-06-06 16:13:35] -rw-------. 1 boincer umatlas   1598969 Jun  6 14:37 agis_ddmendpoints.agis.ALL.json
[2025-06-06 16:13:35] drwx------. 4 boincer umatlas      4096 Jun  6 14:37 pilot3
[2025-06-06 16:13:35] -rw-------. 1 boincer umatlas 198501742 Jun  6 16:12 HITS.44871837._083642.pool.root.1
[2025-06-06 16:13:35] -rw-r--r--. 1 boincer umatlas       529 Jun  6 16:12 boinc_task_state.xml
[2025-06-06 16:13:35] -rw-------. 1 boincer umatlas      1039 Jun  6 16:12 memory_monitor_summary.json
[2025-06-06 16:13:35] -rw-------. 1 boincer umatlas    364960 Jun  6 16:12 log.44871837._083642.job.log.tgz.1
[2025-06-06 16:13:35] -rw-------. 1 boincer umatlas      7754 Jun  6 16:13 heartbeat.json
[2025-06-06 16:13:35] -rw-r--r--. 1 boincer umatlas      6842 Jun  6 16:13 init_data.xml
[2025-06-06 16:13:35] -rw-r--r--. 1 boincer umatlas      8192 Jun  6 16:13 boinc_mmap_file
[2025-06-06 16:13:35] -rw-r--r--. 1 boincer umatlas        27 Jun  6 16:13 wrapper_checkpoint.txt
[2025-06-06 16:13:35] -rw-------. 1 boincer umatlas        95 Jun  6 16:13 pilot_heartbeat.json
[2025-06-06 16:13:35] -rw-------. 1 boincer umatlas       821 Jun  6 16:13 pilotlog.txt
[2025-06-06 16:13:35] -rw-------. 1 boincer umatlas    555917 Jun  6 16:13 log.44871837._083642.job.log.1
[2025-06-06 16:13:35] -rw-------. 1 boincer umatlas       357 Jun  6 16:13 output.list
[2025-06-06 16:13:35] -rw-r--r--. 1 boincer umatlas       620 Jun  6 16:13 runtime_log
[2025-06-06 16:13:35] -rw-------. 1 boincer umatlas    942080 Jun  6 16:13 result.tar.gz
[2025-06-06 16:13:35] -rw-r--r--. 1 boincer umatlas      8667 Jun  6 16:13 runtime_log.err
[2025-06-06 16:13:35] -rw-------. 1 boincer umatlas       653 Jun  6 16:13 0OSKDma2ph7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmK7nKDmk8HzUn.diag
[2025-06-06 16:13:35] -rw-r--r--. 1 boincer umatlas     22602 Jun  6 16:13 stderr.txt
[2025-06-06 16:13:35] HITS file was successfully produced:
[2025-06-06 16:13:35] -rw-------. 1 boincer umatlas 198501742 Jun  6 16:12 shared/HITS.pool.root.1
[2025-06-06 16:13:35]  *** Contents of shared directory: ***
[2025-06-06 16:13:35] total 414012
[2025-06-06 16:13:35] -rw-r--r--. 2 boincer umatlas 223933503 Jun  6 14:37 ATLAS.root_0
[2025-06-06 16:13:35] -rw-r--r--. 2 boincer umatlas    541897 Jun  6 14:37 input.tar.gz
[2025-06-06 16:13:35] -rw-r--r--. 2 boincer umatlas     15095 Jun  6 14:37 start_atlas.sh
[2025-06-06 16:13:35] -rw-------. 1 boincer umatlas 198501742 Jun  6 16:12 HITS.pool.root.1
[2025-06-06 16:13:35] -rw-------. 1 boincer umatlas    942080 Jun  6 16:13 result.tar.gz
16:13:37 (801278): run_atlas exited; CPU time 48119.464877
16:13:37 (801278): called boinc_finish(0)

</stderr_txt>
]]>

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