Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:47:26 (15818): wrapper (7.7.26015): starting
18:47:26 (15818): wrapper: running run_atlas (--nthreads 8)
[2025-06-06 18:47:26] Arguments: --nthreads 8
[2025-06-06 18:47:26] Threads: 8
[2025-06-06 18:47:26] Checking for CVMFS
[2025-06-06 18:47:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 18:47:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 18:47:29] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 18:47:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 18:47:30] 2.11.2.0 702 36528 82356 146868 0 229 22323526 25165825 4127 130560 0 20753127 99.766 26904460 2699 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-06 18:47:30] CVMFS is ok
[2025-06-06 18:47:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 18:47:31] Checking for apptainer binary...
[2025-06-06 18:47:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 18:47:31] Running /usr/bin/apptainer --version
[2025-06-06 18:47:31] apptainer version 1.3.2-1.el7
[2025-06-06 18:47:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 19:07:35] cg-vwn487.simple-grid.lan
[2025-06-06 19:07:35] apptainer works
[2025-06-06 19:07:35] Set ATHENA_PROC_NUMBER=8
[2025-06-06 19:07:35] Set ATHENA_CORE_NUMBER=8
[2025-06-06 19:07:35] Starting ATLAS job with PandaID=6669443332
[2025-06-06 19:07:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-07 01:06:10]  *** The last 200 lines of the pilot log: ***
[2025-06-07 01:06:10] 2025-06-06 21:46:49,083 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-07 01:06:10] 2025-06-06 21:46:49,084 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-07 01:06:10] 2025-06-06 21:46:49,084 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-07 01:06:10] 2025-06-06 21:46:49,089 | INFO     | fitting pss+swap vs Time
[2025-06-07 01:06:10] 2025-06-06 21:46:49,090 | INFO     | sum of square deviations: 6103286527.5
[2025-06-07 01:06:10] 2025-06-06 21:46:49,092 | INFO     | sum of deviations: 1017584614.9999962
[2025-06-07 01:06:10] 2025-06-06 21:46:49,092 | INFO     | mean x: 1749238087.5
[2025-06-07 01:06:10] 2025-06-06 21:46:49,092 | INFO     | mean y: 2501108.888888889
[2025-06-07 01:06:10] 2025-06-06 21:46:49,092 | INFO     | -- intersect: -289144672.08366716
[2025-06-07 01:06:10] 2025-06-06 21:46:49,093 | INFO     | intersect: -289144672.08366716
[2025-06-07 01:06:10] 2025-06-06 21:46:49,093 | INFO     | chi2: 2.368272945760748
[2025-06-07 01:06:10] 2025-06-06 21:46:49,093 | INFO     | sum of square deviations: 5770452380.0
[2025-06-07 01:06:10] 2025-06-06 21:46:49,095 | INFO     | sum of deviations: 18715263478.000008
[2025-06-07 01:06:10] 2025-06-06 21:46:49,096 | INFO     | mean x: 1749237935.0
[2025-06-07 01:06:10] 2025-06-06 21:46:49,096 | INFO     | mean y: 2509094.550943396
[2025-06-07 01:06:10] 2025-06-06 21:46:49,096 | INFO     | -- intersect: -5670780741.910311
[2025-06-07 01:06:10] 2025-06-06 21:46:49,096 | INFO     | intersect: -5670780741.910311
[2025-06-07 01:06:10] 2025-06-06 21:46:49,096 | INFO     | chi2: 1.5952113549200035
[2025-06-07 01:06:10] 2025-06-06 21:46:49,096 | INFO     | current chi2=1.5952113549200035 (change=32.642419541402056 %)
[2025-06-07 01:06:10] 2025-06-06 21:46:49,097 | INFO     | sum of square deviations: 5449944045.0
[2025-06-07 01:06:10] 2025-06-06 21:46:49,099 | INFO     | sum of deviations: 18292481902.500008
[2025-06-07 01:06:10] 2025-06-06 21:46:49,099 | INFO     | mean x: 1749237782.5
[2025-06-07 01:06:10] 2025-06-06 21:46:49,099 | INFO     | mean y: 2508893.373076923
[2025-06-07 01:06:10] 2025-06-06 21:46:49,099 | INFO     | -- intersect: -5868725786.349308
[2025-06-07 01:06:10] 2025-06-06 21:46:49,099 | INFO     | intersect: -5868725786.349308
[2025-06-07 01:06:10] 2025-06-06 21:46:49,099 | INFO     | chi2: 1.5957564938844038
[2025-06-07 01:06:10] 2025-06-06 21:46:49,099 | INFO     | current chi2=1.5957564938844038 (change=-0.0341734631413506 %)
[2025-06-07 01:06:10] 2025-06-06 21:46:49,100 | INFO     | right removable region: 259
[2025-06-07 01:06:10] 2025-06-06 21:46:49,100 | INFO     | sum of square deviations: 5770452380.0
[2025-06-07 01:06:10] 2025-06-06 21:46:49,102 | INFO     | sum of deviations: -39662772363.00001
[2025-06-07 01:06:10] 2025-06-06 21:46:49,102 | INFO     | mean x: 1749238240.0
[2025-06-07 01:06:10] 2025-06-06 21:46:49,102 | INFO     | mean y: 2519584.98490566
[2025-06-07 01:06:10] 2025-06-06 21:46:49,102 | INFO     | -- intersect: 12025777650.893211
[2025-06-07 01:06:10] 2025-06-06 21:46:49,102 | INFO     | intersect: 12025777650.893211
[2025-06-07 01:06:10] 2025-06-06 21:46:49,103 | INFO     | chi2: 0.9329325153753332
[2025-06-07 01:06:10] 2025-06-06 21:46:49,103 | INFO     | current chi2=0.9329325153753332 (change=60.6070526184366 %)
[2025-06-07 01:06:10] 2025-06-06 21:46:49,103 | INFO     | sum of square deviations: 5449944045.0
[2025-06-07 01:06:10] 2025-06-06 21:46:49,105 | INFO     | sum of deviations: -34494111396.0
[2025-06-07 01:06:10] 2025-06-06 21:46:49,105 | INFO     | mean x: 1749238392.5
[2025-06-07 01:06:10] 2025-06-06 21:46:49,106 | INFO     | mean y: 2517106.7615384613
[2025-06-07 01:06:10] 2025-06-06 21:46:49,106 | INFO     | -- intersect: 11073901229.395216
[2025-06-07 01:06:10] 2025-06-06 21:46:49,106 | INFO     | intersect: 11073901229.395216
[2025-06-07 01:06:10] 2025-06-06 21:46:49,106 | INFO     | chi2: 0.9165769201332413
[2025-06-07 01:06:10] 2025-06-06 21:46:49,106 | INFO     | current chi2=0.9165769201332413 (change=1.753138085825183 %)
[2025-06-07 01:06:10] 2025-06-06 21:46:49,106 | INFO     | left removable region: 20
[2025-06-07 01:06:10] 2025-06-06 21:46:49,107 | INFO     | sum of square deviations: 4233158440.0
[2025-06-07 01:06:10] 2025-06-06 21:46:49,108 | INFO     | sum of deviations: 1096045072.0000012
[2025-06-07 01:06:10] 2025-06-06 21:46:49,108 | INFO     | mean x: 1749238362.0
[2025-06-07 01:06:10] 2025-06-06 21:46:49,108 | INFO     | mean y: 2516149.8953974894
[2025-06-07 01:06:10] 2025-06-06 21:46:49,109 | INFO     | -- intersect: -450394865.2716734
[2025-06-07 01:06:10] 2025-06-06 21:46:49,109 | INFO     | intersect: -450394865.2716734
[2025-06-07 01:06:10] 2025-06-06 21:46:49,109 | INFO     | chi2: 0.04873592989961659
[2025-06-07 01:06:10] 2025-06-06 21:46:49,109 | INFO     | -- intersect: -450394865.2716734
[2025-06-07 01:06:10] 2025-06-06 21:46:49,109 | INFO     | current memory leak: 0.26 B/s (using 239 data points, chi2=0.05)
[2025-06-07 01:06:10] 2025-06-06 21:46:49,110 | INFO     | ..............................
[2025-06-07 01:06:10] 2025-06-06 21:46:49,110 | INFO     | . Timing measurements:
[2025-06-07 01:06:10] 2025-06-06 21:46:49,110 | INFO     | . get job = 0 s
[2025-06-07 01:06:10] 2025-06-06 21:46:49,110 | INFO     | . initial setup = 3 s
[2025-06-07 01:06:10] 2025-06-06 21:46:49,110 | INFO     | . payload setup = 12 s
[2025-06-07 01:06:10] 2025-06-06 21:46:49,110 | INFO     | . stage-in = 0 s
[2025-06-07 01:06:10] 2025-06-06 21:46:49,110 | INFO     | . payload execution = 16439 s
[2025-06-07 01:06:10] 2025-06-06 21:46:49,111 | INFO     | . stage-out = 3 s
[2025-06-07 01:06:10] 2025-06-06 21:46:49,111 | INFO     | . log creation = 1 s
[2025-06-07 01:06:10] 2025-06-06 21:46:49,111 | INFO     | ..............................
[2025-06-07 01:06:10] 2025-06-06 21:46:49,222 | INFO     | 
[2025-06-07 01:06:10] 2025-06-06 21:46:49,223 | INFO     | job summary report
[2025-06-07 01:06:10] 2025-06-06 21:46:49,223 | INFO     | --------------------------------------------------
[2025-06-07 01:06:10] 2025-06-06 21:46:49,223 | INFO     | PanDA job id: 6669443332
[2025-06-07 01:06:10] 2025-06-06 21:46:49,223 | INFO     | task id: 44871837
[2025-06-07 01:06:10] 2025-06-06 21:46:49,223 | INFO     | errors: (none)
[2025-06-07 01:06:10] 2025-06-06 21:46:49,223 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-07 01:06:10] 2025-06-06 21:46:49,223 | INFO     | pilot state: finished 
[2025-06-07 01:06:10] 2025-06-06 21:46:49,223 | INFO     | transexitcode: 0
[2025-06-07 01:06:10] 2025-06-06 21:46:49,223 | INFO     | exeerrorcode: 0
[2025-06-07 01:06:10] 2025-06-06 21:46:49,224 | INFO     | exeerrordiag: 
[2025-06-07 01:06:10] 2025-06-06 21:46:49,224 | INFO     | exitcode: 0
[2025-06-07 01:06:10] 2025-06-06 21:46:49,224 | INFO     | exitmsg: OK
[2025-06-07 01:06:10] 2025-06-06 21:46:49,224 | INFO     | cpuconsumptiontime: 61424 s
[2025-06-07 01:06:10] 2025-06-06 21:46:49,224 | INFO     | nevents: 400
[2025-06-07 01:06:10] 2025-06-06 21:46:49,224 | INFO     | neventsw: 0
[2025-06-07 01:06:10] 2025-06-06 21:46:49,224 | INFO     | pid: 27158
[2025-06-07 01:06:10] 2025-06-06 21:46:49,224 | INFO     | pgrp: 27158
[2025-06-07 01:06:10] 2025-06-06 21:46:49,224 | INFO     | corecount: 8
[2025-06-07 01:06:10] 2025-06-06 21:46:49,224 | INFO     | event service: False
[2025-06-07 01:06:10] 2025-06-06 21:46:49,224 | INFO     | sizes: {0: 2397386, 1: 2397386, 11: 2397414, 13: 2397648, 22: 2397704, 16455: 2428796, 16459: 2437737, 16460: 2437793, 16558: 2437963}
[2025-06-07 01:06:10] 2025-06-06 21:46:49,224 | INFO     | --------------------------------------------------
[2025-06-07 01:06:10] 2025-06-06 21:46:49,224 | INFO     | 
[2025-06-07 01:06:10] 2025-06-06 21:46:49,225 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-06-07 01:06:10] 2025-06-06 21:46:49,257 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-07 01:06:10] 2025-06-06 21:46:49,257 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-07 01:06:10] 2025-06-06 21:46:49,257 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-07 01:06:10] 2025-06-06 21:46:49,257 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-07 01:06:10] 2025-06-06 21:46:49,257 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-07 01:06:10] 2025-06-06 21:46:49,257 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-07 01:06:10] 2025-06-06 21:46:49,257 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-07 01:06:10] 2025-06-06 21:46:49,257 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-07 01:06:10] 2025-06-06 21:46:49,258 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-07 01:06:10] 2025-06-06 21:46:49,258 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-07 01:06:10] 2025-06-06 21:46:49,258 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-07 01:06:10] 2025-06-06 21:46:49,258 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-07 01:06:10] 2025-06-06 21:46:49,258 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-07 01:06:10] 2025-06-06 21:46:49,258 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-07 01:06:10] 2025-06-06 21:46:49,258 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-07 01:06:10] 2025-06-06 21:46:49,258 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-07 01:06:10] 2025-06-06 21:46:49,258 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-07 01:06:10] 2025-06-06 21:46:49,258 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-07 01:06:10] 2025-06-06 21:46:49,258 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-07 01:06:10] 2025-06-06 21:46:49,258 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-07 01:06:10] 2025-06-06 21:46:49,259 | INFO     | job 6669443332 has completed (purged errors)
[2025-06-07 01:06:10] 2025-06-06 21:46:49,259 | INFO     | overall cleanup function is called
[2025-06-07 01:06:10] 2025-06-06 21:46:50,267 | INFO     | --- collectZombieJob: --- 10, [27158]
[2025-06-07 01:06:10] 2025-06-06 21:46:50,268 | INFO     | zombie collector waiting for pid 27158
[2025-06-07 01:06:10] 2025-06-06 21:46:50,268 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-07 01:06:10] 2025-06-06 21:46:50,268 | INFO     | collected zombie processes
[2025-06-07 01:06:10] 2025-06-06 21:46:50,268 | INFO     | will attempt to kill all subprocesses of pid=27158
[2025-06-07 01:06:10] 2025-06-06 21:46:50,355 | INFO     | process IDs to be killed: [27158] (in reverse order)
[2025-06-07 01:06:10] 2025-06-06 21:46:50,537 | WARNING  | found no corresponding commands to process id(s)
[2025-06-07 01:06:10] 2025-06-06 21:46:50,537 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-07 01:06:10] 2025-06-06 21:46:50,540 | INFO     | did not find any defunct processes belonging to 27158
[2025-06-07 01:06:10] 2025-06-06 21:46:50,543 | INFO     | did not find any defunct processes belonging to 27158
[2025-06-07 01:06:10] 2025-06-06 21:46:50,543 | INFO     | ready for new job
[2025-06-07 01:06:10] 2025-06-06 21:46:50,543 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-07 01:06:10] 2025-06-06 21:46:50,545 | INFO     | **************************************
[2025-06-07 01:06:10] 2025-06-06 21:46:50,545 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-07 01:06:10] 2025-06-06 21:46:50,545 | INFO     | **************************************
[2025-06-07 01:06:10] 2025-06-06 21:46:50,545 | INFO     | 
[2025-06-07 01:06:10] 2025-06-06 21:46:50,546 | INFO     | pilot is running in a VM
[2025-06-07 01:06:10] 2025-06-06 21:46:50,546 | INFO     | architecture information:
[2025-06-07 01:06:10] 2025-06-06 21:46:50,547 | INFO     | executing command: cat /etc/os-release
[2025-06-07 01:06:10] 2025-06-06 21:46:50,683 | INFO     | cat /etc/os-release:
[2025-06-07 01:06:10] NAME="CentOS Linux"
[2025-06-07 01:06:10] VERSION="7 (Core)"
[2025-06-07 01:06:10] ID="centos"
[2025-06-07 01:06:10] ID_LIKE="rhel fedora"
[2025-06-07 01:06:10] VERSION_ID="7"
[2025-06-07 01:06:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-07 01:06:10] ANSI_COLOR="0;31"
[2025-06-07 01:06:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-07 01:06:10] HOME_URL="https://www.centos.org/"
[2025-06-07 01:06:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-07 01:06:10] 
[2025-06-07 01:06:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-07 01:06:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-07 01:06:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-07 01:06:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-07 01:06:10] 
[2025-06-07 01:06:10] 2025-06-06 21:46:50,683 | INFO     | **************************************
[2025-06-07 01:06:10] 2025-06-06 21:46:51,187 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-06-07 01:06:10] 2025-06-06 21:46:51,208 | INFO     | sufficient remaining disk space (496828940288 B)
[2025-06-07 01:06:10] 2025-06-06 21:46:51,209 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-07 01:06:10] 2025-06-06 21:46:51,209 | INFO     | current server update state: UPDATING_FINAL
[2025-06-07 01:06:10] 2025-06-06 21:46:51,209 | INFO     | update_server=False
[2025-06-07 01:06:10] 2025-06-06 21:46:51,209 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-07 01:06:10] 2025-06-06 21:46:51,209 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-07 01:06:10] 2025-06-06 21:46:51,210 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-07 01:06:10] 2025-06-06 21:46:51,210 | INFO     | found 0 job(s) in 20 queues
[2025-06-07 01:06:10] 2025-06-06 21:46:51,210 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-07 01:06:10] 2025-06-06 21:46:51,210 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-07 01:06:10] 2025-06-06 21:46:51,210 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-07 01:06:10] 2025-06-06 21:46:51,241 | INFO     | all job control threads have been joined
[2025-06-07 01:06:10] 2025-06-06 21:46:51,261 | INFO     | all data control threads have been joined
[2025-06-07 01:06:10] 2025-06-06 21:46:51,683 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-07 01:06:10] 2025-06-06 21:46:51,684 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-07 01:06:10] 2025-06-06 21:46:51,684 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-07 01:06:10] 2025-06-06 21:46:51,684 | INFO     | will abort loop
[2025-06-07 01:06:10] 2025-06-06 21:46:51,796 | INFO     | all payload control threads have been joined
[2025-06-07 01:06:10] 2025-06-06 21:46:52,150 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-07 01:06:10] 2025-06-06 21:46:52,216 | INFO     | [job] queue monitor thread has finished
[2025-06-07 01:06:10] 2025-06-06 21:46:52,216 | INFO     | [job] retrieve thread has finished
[2025-06-07 01:06:10] 2025-06-06 21:46:52,248 | INFO     | [job] control thread has finished
[2025-06-07 01:06:10] 2025-06-06 21:46:52,267 | INFO     | [data] control thread has finished
[2025-06-07 01:06:10] 2025-06-06 21:46:52,634 | INFO     | [data] copytool_in thread has finished
[2025-06-07 01:06:10] 2025-06-06 21:46:52,665 | INFO     | [payload] validate_pre thread has finished
[2025-06-07 01:06:10] 2025-06-06 21:46:52,689 | INFO     | [job] job monitor thread has finished
[2025-06-07 01:06:10] 2025-06-06 21:46:52,742 | INFO     | [payload] execute_payloads thread has finished
[2025-06-07 01:06:10] 2025-06-06 21:46:52,803 | INFO     | [payload] control thread has finished
[2025-06-07 01:06:10] 2025-06-06 21:46:52,917 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-07 01:06:10] 2025-06-06 21:46:53,217 | INFO     | [data] copytool_out thread has finished
[2025-06-07 01:06:10] 2025-06-06 21:46:53,337 | INFO     | [job] create_data_payload thread has finished
[2025-06-07 01:06:10] 2025-06-06 21:46:53,495 | INFO     | [job] validate thread has finished
[2025-06-07 01:06:10] 2025-06-06 21:46:53,643 | INFO     | [payload] failed_post thread has finished
[2025-06-07 01:06:10] 2025-06-06 21:46:53,661 | INFO     | [payload] validate_post thread has finished
[2025-06-07 01:06:10] 2025-06-06 21:46:56,161 | INFO     | [data] queue_monitor thread has finished
[2025-06-07 01:06:10] 2025-06-06 21:46:57,293 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140175072507712)>', '<ExcThread(monitor, started 140174461736704)>']
[2025-06-07 01:06:10] 2025-06-06 21:46:58,252 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-07 01:06:10] 2025-06-06 21:46:58,253 | INFO     | [monitor] control thread has ended
[2025-06-07 01:06:10] 2025-06-06 21:47:02,318 | INFO     | all workflow threads have been joined
[2025-06-07 01:06:10] 2025-06-06 21:47:02,319 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-07 01:06:10] 2025-06-06 21:47:02,319 | INFO     | traces error code: 0
[2025-06-07 01:06:10] 2025-06-06 21:47:02,319 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-07 01:06:10] 2025-06-06 21:47:02,554 [wrapper] ==== pilot stdout END ====
[2025-06-07 01:06:10] 2025-06-06 21:47:02,560 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-07 01:06:10] 2025-06-06 21:47:02,563 [wrapper] pilotpid: 20543
[2025-06-07 01:06:10] 2025-06-06 21:47:02,568 [wrapper] Pilot exit status: 0
[2025-06-07 01:06:10] 2025-06-06 21:47:02,640 [wrapper] pandaids: 6669443332
[2025-06-07 01:06:10] 2025-06-06 21:47:03,455 [wrapper] cleanup supervisor_pilot  8342 20544
[2025-06-07 01:06:10] 2025-06-06 21:47:03,548 [wrapper] Test setup, not cleaning
[2025-06-07 01:06:10] 2025-06-06 21:47:03,613 [wrapper] apfmon messages muted
[2025-06-07 01:06:10] 2025-06-06 21:47:03,696 [wrapper] ==== wrapper stdout END ====
[2025-06-07 01:06:10] 2025-06-06 21:47:03,784 [wrapper] ==== wrapper stderr END ====
[2025-06-07 01:06:10]  *** Error codes and diagnostics ***
[2025-06-07 01:06:10]     "exeErrorCode": 0,
[2025-06-07 01:06:10]     "exeErrorDiag": "",
[2025-06-07 01:06:10]     "pilotErrorCode": 0,
[2025-06-07 01:06:10]     "pilotErrorDiag": "",
[2025-06-07 01:06:10]  *** Listing of results directory ***
[2025-06-07 01:06:10] total 424384
[2025-06-07 01:06:10] -rw-r--r--. 1 boinc boinc    495897 May 29 08:19 pilot3.tar.gz
[2025-06-07 01:06:10] -rwx------. 1 boinc boinc     37140 May 29 08:23 runpilot2-wrapper.sh
[2025-06-07 01:06:10] -rw-r--r--. 1 boinc boinc      5111 May 29 08:23 queuedata.json
[2025-06-07 01:06:10] -rw-r--r--. 1 boinc boinc       100 Jun  6 18:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-07 01:06:10] -rwxr-xr-x. 1 boinc boinc      7986 Jun  6 18:47 run_atlas
[2025-06-07 01:06:10] -rw-r--r--. 1 boinc boinc       105 Jun  6 18:47 job.xml
[2025-06-07 01:06:10] -rw-r--r--. 1 boinc boinc      6391 Jun  6 18:47 init_data.xml
[2025-06-07 01:06:10] -rw-r--r--. 2 boinc boinc 223286353 Jun  6 18:47 EVNT.44871834._003797.pool.root.1
[2025-06-07 01:06:10] -rw-r--r--. 2 boinc boinc     15093 Jun  6 18:47 start_atlas.sh
[2025-06-07 01:06:10] drwxrwx--x. 2 boinc boinc        68 Jun  6 18:47 shared
[2025-06-07 01:06:10] -rw-r--r--. 2 boinc boinc    508876 Jun  6 18:47 input.tar.gz
[2025-06-07 01:06:10] -rw-r--r--. 1 boinc boinc         0 Jun  6 18:47 boinc_lockfile
[2025-06-07 01:06:10] -rw-r--r--. 1 boinc boinc      2556 Jun  6 19:07 pandaJob.out
[2025-06-07 01:06:10] -rw-------. 1 boinc boinc    985748 Jun  6 19:10 agis_schedconf.cvmfs.json
[2025-06-07 01:06:10] drwx------. 4 boinc boinc      4096 Jun  6 19:10 pilot3
[2025-06-07 01:06:10] -rw-------. 1 boinc boinc 203823130 Jun  6 23:43 HITS.44871837._096335.pool.root.1
[2025-06-07 01:06:10] -rw-r--r--. 1 boinc boinc       531 Jun  6 23:43 boinc_task_state.xml
[2025-06-07 01:06:10] -rw-------. 1 boinc boinc      1021 Jun  6 23:45 memory_monitor_summary.json
[2025-06-07 01:06:10] -rw-------. 1 boinc boinc   1598969 Jun  6 23:45 agis_ddmendpoints.agis.ALL.json
[2025-06-07 01:06:10] -rw-------. 1 boinc boinc    392898 Jun  6 23:45 log.44871837._096335.job.log.tgz.1
[2025-06-07 01:06:10] -rw-------. 1 boinc boinc      7685 Jun  6 23:46 heartbeat.json
[2025-06-07 01:06:10] -rw-------. 1 boinc boinc        95 Jun  6 23:46 pilot_heartbeat.json
[2025-06-07 01:06:10] -rw-------. 1 boinc boinc      4725 Jun  6 23:47 pilotlog.txt
[2025-06-07 01:06:10] -rw-------. 1 boinc boinc   1429068 Jun  6 23:47 log.44871837._096335.job.log.1
[2025-06-07 01:06:10] -rw-------. 1 boinc boinc       357 Jun  6 23:47 output.list
[2025-06-07 01:06:10] -rw-r--r--. 1 boinc boinc       620 Jun  6 23:47 runtime_log
[2025-06-07 01:06:10] -rw-------. 1 boinc boinc   1843200 Jun  6 23:47 result.tar.gz
[2025-06-07 01:06:10] -rw-r--r--. 1 boinc boinc      8659 Jun  6 23:47 runtime_log.err
[2025-06-07 01:06:10] -rw-------. 1 boinc boinc       657 Jun  6 23:47 dQ5NDmtqle7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmezdKDmURWAUn.diag
[2025-06-07 01:06:10] -rw-r--r--. 1 boinc boinc      8192 Jun  7 01:06 boinc_mmap_file
[2025-06-07 01:06:10] -rw-r--r--. 1 boinc boinc        28 Jun  7 01:06 wrapper_checkpoint.txt
[2025-06-07 01:06:10] -rw-r--r--. 1 boinc boinc     20514 Jun  7 01:06 stderr.txt
[2025-06-07 01:06:10] HITS file was successfully produced:
[2025-06-07 01:06:10] -rw-------. 1 boinc boinc 203823130 Jun  6 23:43 shared/HITS.pool.root.1
[2025-06-07 01:06:10]  *** Contents of shared directory: ***
[2025-06-07 01:06:10] total 419420
[2025-06-07 01:06:10] -rw-r--r--. 2 boinc boinc 223286353 Jun  6 18:47 ATLAS.root_0
[2025-06-07 01:06:10] -rw-r--r--. 2 boinc boinc     15093 Jun  6 18:47 start_atlas.sh
[2025-06-07 01:06:10] -rw-r--r--. 2 boinc boinc    508876 Jun  6 18:47 input.tar.gz
[2025-06-07 01:06:10] -rw-------. 1 boinc boinc 203823130 Jun  6 23:43 HITS.pool.root.1
[2025-06-07 01:06:10] -rw-------. 1 boinc boinc   1843200 Jun  6 23:47 result.tar.gz
01:06:12 (15818): run_atlas exited; CPU time 61613.702730
01:06:12 (15818): called boinc_finish(0)

</stderr_txt>
]]>

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