Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:57:09 (1193): wrapper (7.7.26015): starting
11:57:09 (1193): wrapper: running run_atlas (--nthreads 12)
[2025-06-06 11:57:09] Arguments: --nthreads 12
[2025-06-06 11:57:09] Threads: 12
[2025-06-06 11:57:09] Checking for CVMFS
[2025-06-06 11:57:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 11:57:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 11:57:10] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 11:57:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 11:57:10] 2.11.2.0 2984 38724 87756 146867 0 56 19135882 20275201 1 130560 0 16903731 99.983 7094078 8515 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-06 11:57:10] CVMFS is ok
[2025-06-06 11:57:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 11:57:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 11:57:10] Further information can be found at the LHC@home message board.
[2025-06-06 11:57:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 11:57:10] Checking for apptainer binary...
[2025-06-06 11:57:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 11:57:10] Running /usr/bin/apptainer --version
[2025-06-06 11:57:10] apptainer version 1.3.2-1.el7
[2025-06-06 11:57:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 11:57:12] c-205-26.aglt2.org
[2025-06-06 11:57:12] apptainer works
[2025-06-06 11:57:12] Set ATHENA_PROC_NUMBER=12
[2025-06-06 11:57:12] Set ATHENA_CORE_NUMBER=12
[2025-06-06 11:57:12] Starting ATLAS job with PandaID=6678150239
[2025-06-06 11:57:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 13:01:33]  *** The last 200 lines of the pilot log: ***
[2025-06-06 13:01:33]  is_tar=False
[2025-06-06 13:01:33]  lfn=log.45006595._046738.job.log.tgz.1
[2025-06-06 13:01:33]  mtime=0
[2025-06-06 13:01:33]  protocol_id=None
[2025-06-06 13:01:33]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 13:01:33]  replicas=None
[2025-06-06 13:01:33]  scope=mc23_13p6TeV
[2025-06-06 13:01:33]  status=None
[2025-06-06 13:01:33]  status_code=0
[2025-06-06 13:01:33]  storage_token=
[2025-06-06 13:01:33]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678150239/log.45006595._046738.job.log.tgz.1
[2025-06-06 13:01:33]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/00/1f/log.45006595._046738.job.log.tgz.1
[2025-06-06 13:01:33]  workdir=None
[2025-06-06 13:01:33] ]
[2025-06-06 13:01:33] 2025-06-06 17:01:11,738 | INFO     | transferring file log.45006595._046738.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678150239/log.45006595._046738.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-06 13:01:33] 2025-06-06 17:01:11,738 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678150239/log.45006595._046738.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._046738.job
[2025-06-06 13:01:33] 2025-06-06 17:01:11,758 | INFO     | adding to output.list: log.45006595._046738.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/00/1f/log.45006595._046738.job.log.tg
[2025-06-06 13:01:33] 2025-06-06 17:01:11,759 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 13:01:33] 2025-06-06 17:01:11,759 | INFO     | summary of transferred files:
[2025-06-06 13:01:33] 2025-06-06 17:01:11,759 | INFO     |  -- lfn=log.45006595._046738.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 13:01:33] 2025-06-06 17:01:11,760 | INFO     | stage-out finished correctly
[2025-06-06 13:01:33] 2025-06-06 17:01:13,382 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 13:01:33] 2025-06-06 17:01:14,787 | WARNING  | process 11749 can no longer be monitored (due to stat problems) - aborting
[2025-06-06 13:01:33] 2025-06-06 17:01:14,787 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678150239/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 13:01:33] 2025-06-06 17:01:14,876 | INFO     | number of running child processes to parent process 11749: 1
[2025-06-06 13:01:33] 2025-06-06 17:01:14,876 | INFO     | maximum number of monitored processes: 6
[2025-06-06 13:01:33] 2025-06-06 17:01:15,643 | INFO     | job 6678150239 has state=finished
[2025-06-06 13:01:33] 2025-06-06 17:01:15,643 | INFO     | preparing for final server update for job 6678150239 in state='finished'
[2025-06-06 13:01:33] 2025-06-06 17:01:15,644 | INFO     | this job has now completed (state=finished)
[2025-06-06 13:01:33] 2025-06-06 17:01:15,644 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 13:01:33] 2025-06-06 17:01:15,644 | INFO     | log transfer has been attempted: DONE
[2025-06-06 13:01:33] 2025-06-06 17:01:15,645 | INFO     | job 6678150239 has finished - writing final server update
[2025-06-06 13:01:33] 2025-06-06 17:01:15,653 | INFO     | total number of processed events: 400 (read)
[2025-06-06 13:01:33] 2025-06-06 17:01:15,654 | INFO     | executing command: lscpu
[2025-06-06 13:01:33] 2025-06-06 17:01:15,680 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 13:01:33] 2025-06-06 17:01:17,380 | INFO     | monitor loop #286: job 0:6678150239 is in state 'finished'
[2025-06-06 13:01:33] 2025-06-06 17:01:17,380 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 13:01:33] 2025-06-06 17:01:19,825 | INFO     | PID=5326 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-06 13:01:33] 2025-06-06 17:01:19,882 | INFO     | monitor loop #287: job 0:6678150239 is in state 'finished'
[2025-06-06 13:01:33] 2025-06-06 17:01:19,883 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 13:01:33] 2025-06-06 17:01:20,283 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-06 13:01:33] 2025-06-06 17:01:20,283 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678150239/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 13:01:33] 2025-06-06 17:01:20,284 | INFO     | extracted standard info from prmon json
[2025-06-06 13:01:33] 2025-06-06 17:01:20,284 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 13:01:33] 2025-06-06 17:01:20,284 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 13:01:33] 2025-06-06 17:01:20,285 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 13:01:33] 2025-06-06 17:01:20,285 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 13:01:33] 2025-06-06 17:01:20,287 | INFO     | fitting pss+swap vs Time
[2025-06-06 13:01:33] 2025-06-06 17:01:20,287 | INFO     | sum of square deviations: 54438230.0
[2025-06-06 13:01:33] 2025-06-06 17:01:20,288 | INFO     | sum of deviations: -3728339032.0000005
[2025-06-06 13:01:33] 2025-06-06 17:01:20,288 | INFO     | mean x: 1749227460.5
[2025-06-06 13:01:33] 2025-06-06 17:01:20,288 | INFO     | mean y: 2720116.1428571427
[2025-06-06 13:01:33] 2025-06-06 17:01:20,288 | INFO     | -- intersect: 119802960073.03323
[2025-06-06 13:01:33] 2025-06-06 17:01:20,288 | INFO     | intersect: 119802960073.03323
[2025-06-06 13:01:33] 2025-06-06 17:01:20,288 | INFO     | chi2: 0.07367877532402613
[2025-06-06 13:01:33] 2025-06-06 17:01:20,289 | INFO     | -- intersect: 119802960073.03323
[2025-06-06 13:01:33] 2025-06-06 17:01:20,289 | INFO     | current memory leak: -68.49 B/s (using 56 data points, chi2=0.07)
[2025-06-06 13:01:33] 2025-06-06 17:01:20,289 | INFO     | ..............................
[2025-06-06 13:01:33] 2025-06-06 17:01:20,289 | INFO     | . Timing measurements:
[2025-06-06 13:01:33] 2025-06-06 17:01:20,290 | INFO     | . get job = 0 s
[2025-06-06 13:01:33] 2025-06-06 17:01:20,290 | INFO     | . initial setup = 2 s
[2025-06-06 13:01:33] 2025-06-06 17:01:20,290 | INFO     | . payload setup = 9 s
[2025-06-06 13:01:33] 2025-06-06 17:01:20,290 | INFO     | . stage-in = 0 s
[2025-06-06 13:01:33] 2025-06-06 17:01:20,290 | INFO     | . payload execution = 3794 s
[2025-06-06 13:01:33] 2025-06-06 17:01:20,290 | INFO     | . stage-out = 0 s
[2025-06-06 13:01:33] 2025-06-06 17:01:20,290 | INFO     | . log creation = 0 s
[2025-06-06 13:01:33] 2025-06-06 17:01:20,291 | INFO     | ..............................
[2025-06-06 13:01:33] 2025-06-06 17:01:20,691 | INFO     | 
[2025-06-06 13:01:33] 2025-06-06 17:01:20,691 | INFO     | job summary report
[2025-06-06 13:01:33] 2025-06-06 17:01:20,697 | INFO     | --------------------------------------------------
[2025-06-06 13:01:33] 2025-06-06 17:01:20,697 | INFO     | PanDA job id: 6678150239
[2025-06-06 13:01:33] 2025-06-06 17:01:20,697 | INFO     | task id: 45006595
[2025-06-06 13:01:33] 2025-06-06 17:01:20,697 | INFO     | errors: (none)
[2025-06-06 13:01:33] 2025-06-06 17:01:20,697 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 13:01:33] 2025-06-06 17:01:20,698 | INFO     | pilot state: finished 
[2025-06-06 13:01:33] 2025-06-06 17:01:20,698 | INFO     | transexitcode: 0
[2025-06-06 13:01:33] 2025-06-06 17:01:20,698 | INFO     | exeerrorcode: 0
[2025-06-06 13:01:33] 2025-06-06 17:01:20,698 | INFO     | exeerrordiag: 
[2025-06-06 13:01:33] 2025-06-06 17:01:20,698 | INFO     | exitcode: 0
[2025-06-06 13:01:33] 2025-06-06 17:01:20,698 | INFO     | exitmsg: OK
[2025-06-06 13:01:33] 2025-06-06 17:01:20,698 | INFO     | cpuconsumptiontime: 40697 s
[2025-06-06 13:01:33] 2025-06-06 17:01:20,699 | INFO     | nevents: 400
[2025-06-06 13:01:33] 2025-06-06 17:01:20,699 | INFO     | neventsw: 0
[2025-06-06 13:01:33] 2025-06-06 17:01:20,699 | INFO     | pid: 11749
[2025-06-06 13:01:33] 2025-06-06 17:01:20,699 | INFO     | pgrp: 11749
[2025-06-06 13:01:33] 2025-06-06 17:01:20,699 | INFO     | corecount: 12
[2025-06-06 13:01:33] 2025-06-06 17:01:20,699 | INFO     | event service: False
[2025-06-06 13:01:33] 2025-06-06 17:01:20,699 | INFO     | sizes: {0: 2397171, 1: 2397370, 6: 2397576, 11: 2397604, 3808: 2423228, 3809: 2432169, 3811: 2432353, 3817: 2432523}
[2025-06-06 13:01:33] 2025-06-06 17:01:20,700 | INFO     | --------------------------------------------------
[2025-06-06 13:01:33] 2025-06-06 17:01:20,700 | INFO     | 
[2025-06-06 13:01:33] 2025-06-06 17:01:20,700 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-06 13:01:33] 2025-06-06 17:01:20,736 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 13:01:33] 2025-06-06 17:01:20,736 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 13:01:33] 2025-06-06 17:01:20,736 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 13:01:33] 2025-06-06 17:01:20,736 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 13:01:33] 2025-06-06 17:01:20,737 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 13:01:33] 2025-06-06 17:01:20,737 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 13:01:33] 2025-06-06 17:01:20,737 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 13:01:33] 2025-06-06 17:01:20,737 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 13:01:33] 2025-06-06 17:01:20,737 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 13:01:33] 2025-06-06 17:01:20,738 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 13:01:33] 2025-06-06 17:01:20,738 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 13:01:33] 2025-06-06 17:01:20,738 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 13:01:33] 2025-06-06 17:01:20,738 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 13:01:33] 2025-06-06 17:01:20,738 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 13:01:33] 2025-06-06 17:01:20,738 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 13:01:33] 2025-06-06 17:01:20,739 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 13:01:33] 2025-06-06 17:01:20,739 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 13:01:33] 2025-06-06 17:01:20,739 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 13:01:33] 2025-06-06 17:01:20,739 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 13:01:33] 2025-06-06 17:01:20,739 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 13:01:33] 2025-06-06 17:01:20,739 | INFO     | job 6678150239 has completed (purged errors)
[2025-06-06 13:01:33] 2025-06-06 17:01:20,740 | INFO     | overall cleanup function is called
[2025-06-06 13:01:33] 2025-06-06 17:01:21,748 | INFO     | --- collectZombieJob: --- 10, [11749]
[2025-06-06 13:01:33] 2025-06-06 17:01:21,748 | INFO     | zombie collector waiting for pid 11749
[2025-06-06 13:01:33] 2025-06-06 17:01:21,748 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 13:01:33] 2025-06-06 17:01:21,748 | INFO     | collected zombie processes
[2025-06-06 13:01:33] 2025-06-06 17:01:21,749 | INFO     | will attempt to kill all subprocesses of pid=11749
[2025-06-06 13:01:33] 2025-06-06 17:01:21,840 | INFO     | process IDs to be killed: [11749] (in reverse order)
[2025-06-06 13:01:33] 2025-06-06 17:01:21,893 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 13:01:33] 2025-06-06 17:01:21,893 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 13:01:33] 2025-06-06 17:01:21,897 | INFO     | did not find any defunct processes belonging to 11749
[2025-06-06 13:01:33] 2025-06-06 17:01:21,899 | INFO     | did not find any defunct processes belonging to 11749
[2025-06-06 13:01:33] 2025-06-06 17:01:21,900 | INFO     | ready for new job
[2025-06-06 13:01:33] 2025-06-06 17:01:21,900 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 13:01:33] 2025-06-06 17:01:21,901 | INFO     | **************************************
[2025-06-06 13:01:33] 2025-06-06 17:01:21,901 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 13:01:33] 2025-06-06 17:01:21,901 | INFO     | **************************************
[2025-06-06 13:01:33] 2025-06-06 17:01:21,901 | INFO     | 
[2025-06-06 13:01:33] 2025-06-06 17:01:21,902 | INFO     | architecture information:
[2025-06-06 13:01:33] 2025-06-06 17:01:21,902 | INFO     | executing command: cat /etc/os-release
[2025-06-06 13:01:33] 2025-06-06 17:01:21,916 | INFO     | cat /etc/os-release:
[2025-06-06 13:01:33] NAME="CentOS Linux"
[2025-06-06 13:01:33] VERSION="7 (Core)"
[2025-06-06 13:01:33] ID="centos"
[2025-06-06 13:01:33] ID_LIKE="rhel fedora"
[2025-06-06 13:01:33] VERSION_ID="7"
[2025-06-06 13:01:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 13:01:33] ANSI_COLOR="0;31"
[2025-06-06 13:01:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 13:01:33] HOME_URL="https://www.centos.org/"
[2025-06-06 13:01:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 13:01:33] 
[2025-06-06 13:01:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 13:01:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 13:01:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 13:01:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 13:01:33] 
[2025-06-06 13:01:33] 2025-06-06 17:01:21,916 | INFO     | **************************************
[2025-06-06 13:01:33] 2025-06-06 17:01:22,419 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-06 13:01:33] 2025-06-06 17:01:22,436 | INFO     | sufficient remaining disk space (29418848256 B)
[2025-06-06 13:01:33] 2025-06-06 17:01:22,436 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 13:01:33] 2025-06-06 17:01:22,436 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 13:01:33] 2025-06-06 17:01:22,436 | INFO     | update_server=False
[2025-06-06 13:01:33] 2025-06-06 17:01:22,437 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 13:01:33] 2025-06-06 17:01:22,437 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 13:01:33] 2025-06-06 17:01:22,437 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 13:01:33] 2025-06-06 17:01:22,438 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 13:01:33] 2025-06-06 17:01:22,438 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 13:01:33] 2025-06-06 17:01:22,438 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 13:01:33] 2025-06-06 17:01:22,573 | INFO     | all payload control threads have been joined
[2025-06-06 13:01:33] 2025-06-06 17:01:22,579 | INFO     | all data control threads have been joined
[2025-06-06 13:01:33] 2025-06-06 17:01:23,391 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 13:01:33] 2025-06-06 17:01:23,391 | INFO     | aborting loop
[2025-06-06 13:01:33] 2025-06-06 17:01:23,442 | INFO     | [job] retrieve thread has finished
[2025-06-06 13:01:33] 2025-06-06 17:01:23,578 | INFO     | [payload] control thread has finished
[2025-06-06 13:01:33] 2025-06-06 17:01:23,584 | INFO     | [data] control thread has finished
[2025-06-06 13:01:33] 2025-06-06 17:01:23,602 | INFO     | all job control threads have been joined
[2025-06-06 13:01:33] 2025-06-06 17:01:23,854 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 13:01:33] 2025-06-06 17:01:23,973 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 13:01:33] 2025-06-06 17:01:24,205 | INFO     | [data] copytool_in thread has finished
[2025-06-06 13:01:33] 2025-06-06 17:01:24,377 | INFO     | [payload] failed_post thread has finished
[2025-06-06 13:01:33] 2025-06-06 17:01:24,396 | INFO     | [job] job monitor thread has finished
[2025-06-06 13:01:33] 2025-06-06 17:01:24,427 | INFO     | [job] validate thread has finished
[2025-06-06 13:01:33] 2025-06-06 17:01:24,443 | INFO     | [data] copytool_out thread has finished
[2025-06-06 13:01:33] 2025-06-06 17:01:24,608 | INFO     | [job] control thread has finished
[2025-06-06 13:01:33] 2025-06-06 17:01:24,693 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 13:01:33] 2025-06-06 17:01:24,849 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 13:01:33] 2025-06-06 17:01:24,853 | INFO     | [payload] validate_post thread has finished
[2025-06-06 13:01:33] 2025-06-06 17:01:24,858 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 13:01:33] 2025-06-06 17:01:25,383 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 13:01:33] 2025-06-06 17:01:26,389 | INFO     | [job] queue monitor thread has finished
[2025-06-06 13:01:33] 2025-06-06 17:01:27,979 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 13:01:33] 2025-06-06 17:01:28,375 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140483598137152)>', '<ExcThread(monitor, started 140482927646464)>']
[2025-06-06 13:01:33] 2025-06-06 17:01:28,469 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 13:01:33] 2025-06-06 17:01:28,469 | INFO     | [monitor] control thread has ended
[2025-06-06 13:01:33] 2025-06-06 17:01:33,400 | INFO     | all workflow threads have been joined
[2025-06-06 13:01:33] 2025-06-06 17:01:33,400 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 13:01:33] 2025-06-06 17:01:33,403 | INFO     | traces error code: 0
[2025-06-06 13:01:33] 2025-06-06 17:01:33,403 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 13:01:33] 2025-06-06 17:01:33,500 [wrapper] ==== pilot stdout END ====
[2025-06-06 13:01:33] 2025-06-06 17:01:33,504 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 13:01:33] 2025-06-06 17:01:33,508 [wrapper] pilotpid: 5326
[2025-06-06 13:01:33] 2025-06-06 17:01:33,512 [wrapper] Pilot exit status: 0
[2025-06-06 13:01:33] 2025-06-06 17:01:33,528 [wrapper] pandaids: 6678150239
[2025-06-06 13:01:33] 2025-06-06 17:01:33,569 [wrapper] cleanup supervisor_pilot 16700 5327
[2025-06-06 13:01:33] 2025-06-06 17:01:33,573 [wrapper] Test setup, not cleaning
[2025-06-06 13:01:33] 2025-06-06 17:01:33,577 [wrapper] apfmon messages muted
[2025-06-06 13:01:33] 2025-06-06 17:01:33,581 [wrapper] ==== wrapper stdout END ====
[2025-06-06 13:01:33] 2025-06-06 17:01:33,585 [wrapper] ==== wrapper stderr END ====
[2025-06-06 13:01:33]  *** Error codes and diagnostics ***
[2025-06-06 13:01:33]     "exeErrorCode": 0,
[2025-06-06 13:01:33]     "exeErrorDiag": "",
[2025-06-06 13:01:33]     "pilotErrorCode": 0,
[2025-06-06 13:01:33]     "pilotErrorDiag": "",
[2025-06-06 13:01:33]  *** Listing of results directory ***
[2025-06-06 13:01:33] total 389480
[2025-06-06 13:01:33] -rw-r--r-- 1 boincer umatlas    495897 Jun  3 17:57 pilot3.tar.gz
[2025-06-06 13:01:33] -rwx------ 1 boincer umatlas     37140 Jun  3 18:02 runpilot2-wrapper.sh
[2025-06-06 13:01:33] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 18:02 queuedata.json
[2025-06-06 13:01:33] -rw-r--r-- 1 boincer umatlas       100 Jun  6 11:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 13:01:33] -rwxr-xr-x 1 boincer umatlas      7986 Jun  6 11:57 run_atlas
[2025-06-06 13:01:33] -rw-r--r-- 1 boincer umatlas       105 Jun  6 11:57 job.xml
[2025-06-06 13:01:33] -rw-r--r-- 2 boincer umatlas 217039338 Jun  6 11:57 EVNT.45006593._001874.pool.root.1
[2025-06-06 13:01:33] -rw-r--r-- 2 boincer umatlas     15093 Jun  6 11:57 start_atlas.sh
[2025-06-06 13:01:33] drwxrwx--x 2 boincer umatlas      4096 Jun  6 11:57 shared
[2025-06-06 13:01:33] -rw-r--r-- 2 boincer umatlas    508873 Jun  6 11:57 input.tar.gz
[2025-06-06 13:01:33] -rw-r--r-- 1 boincer umatlas         0 Jun  6 11:57 boinc_lockfile
[2025-06-06 13:01:33] -rw-r--r-- 1 boincer umatlas      2525 Jun  6 11:57 pandaJob.out
[2025-06-06 13:01:33] -rw------- 1 boincer umatlas    985740 Jun  6 11:57 agis_schedconf.cvmfs.json
[2025-06-06 13:01:33] -rw------- 1 boincer umatlas   1598969 Jun  6 11:57 agis_ddmendpoints.agis.ALL.json
[2025-06-06 13:01:33] drwx------ 4 boincer umatlas      4096 Jun  6 11:57 pilot3
[2025-06-06 13:01:33] -rw------- 1 boincer umatlas 176519497 Jun  6 13:00 HITS.45006595._046738.pool.root.1
[2025-06-06 13:01:33] -rw-r--r-- 1 boincer umatlas       529 Jun  6 13:00 boinc_task_state.xml
[2025-06-06 13:01:33] -rw------- 1 boincer umatlas      1046 Jun  6 13:01 memory_monitor_summary.json
[2025-06-06 13:01:33] -rw------- 1 boincer umatlas    346018 Jun  6 13:01 log.45006595._046738.job.log.tgz.1
[2025-06-06 13:01:33] -rw------- 1 boincer umatlas        95 Jun  6 13:01 pilot_heartbeat.json
[2025-06-06 13:01:33] -rw------- 1 boincer umatlas      7750 Jun  6 13:01 heartbeat.json
[2025-06-06 13:01:33] -rw-r--r-- 1 boincer umatlas      5868 Jun  6 13:01 init_data.xml
[2025-06-06 13:01:33] -rw-r--r-- 1 boincer umatlas      8192 Jun  6 13:01 boinc_mmap_file
[2025-06-06 13:01:33] -rw-r--r-- 1 boincer umatlas        27 Jun  6 13:01 wrapper_checkpoint.txt
[2025-06-06 13:01:33] -rw------- 1 boincer umatlas      4476 Jun  6 13:01 pilotlog.txt
[2025-06-06 13:01:33] -rw------- 1 boincer umatlas    375200 Jun  6 13:01 log.45006595._046738.job.log.1
[2025-06-06 13:01:33] -rw------- 1 boincer umatlas       357 Jun  6 13:01 output.list
[2025-06-06 13:01:33] -rw-r--r-- 1 boincer umatlas       620 Jun  6 13:01 runtime_log
[2025-06-06 13:01:33] -rw------- 1 boincer umatlas    737280 Jun  6 13:01 result.tar.gz
[2025-06-06 13:01:33] -rw-r--r-- 1 boincer umatlas      8661 Jun  6 13:01 runtime_log.err
[2025-06-06 13:01:33] -rw------- 1 boincer umatlas       659 Jun  6 13:01 cPtLDmPtog7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmuJmKDmk0Dlin.diag
[2025-06-06 13:01:33] -rw-r--r-- 1 boincer umatlas     21615 Jun  6 13:01 stderr.txt
[2025-06-06 13:01:33] HITS file was successfully produced:
[2025-06-06 13:01:33] -rw------- 1 boincer umatlas 176519497 Jun  6 13:00 shared/HITS.pool.root.1
[2025-06-06 13:01:33]  *** Contents of shared directory: ***
[2025-06-06 13:01:33] total 385580
[2025-06-06 13:01:33] -rw-r--r-- 2 boincer umatlas 217039338 Jun  6 11:57 ATLAS.root_0
[2025-06-06 13:01:33] -rw-r--r-- 2 boincer umatlas     15093 Jun  6 11:57 start_atlas.sh
[2025-06-06 13:01:33] -rw-r--r-- 2 boincer umatlas    508873 Jun  6 11:57 input.tar.gz
[2025-06-06 13:01:33] -rw------- 1 boincer umatlas 176519497 Jun  6 13:00 HITS.pool.root.1
[2025-06-06 13:01:33] -rw------- 1 boincer umatlas    737280 Jun  6 13:01 result.tar.gz
13:01:35 (1193): run_atlas exited; CPU time 40675.412826
13:01:35 (1193): called boinc_finish(0)

</stderr_txt>
]]>

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