Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:31:49 (3417): wrapper (7.7.26015): starting
11:31:49 (3417): wrapper: running run_atlas (--nthreads 12)
[2025-06-06 11:31:49] Arguments: --nthreads 12
[2025-06-06 11:31:49] Threads: 12
[2025-06-06 11:31:49] Checking for CVMFS
[2025-06-06 11:31:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 11:31:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 11:31:49] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 11:31:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 11:31:49] 2.11.2.0 2914 38745 88728 146867 2 1 20253798 20275201 1 130560 0 16624516 99.983 6765437 8177 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-06 11:31:49] CVMFS is ok
[2025-06-06 11:31:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 11:31:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 11:31:49] Further information can be found at the LHC@home message board.
[2025-06-06 11:31:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 11:31:49] Checking for apptainer binary...
[2025-06-06 11:31:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 11:31:49] Running /usr/bin/apptainer --version
[2025-06-06 11:31:50] apptainer version 1.3.2-1.el7
[2025-06-06 11:31:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 11:31:51] c-205-5.aglt2.org
[2025-06-06 11:31:51] apptainer works
[2025-06-06 11:31:51] Set ATHENA_PROC_NUMBER=12
[2025-06-06 11:31:51] Set ATHENA_CORE_NUMBER=12
[2025-06-06 11:31:51] Starting ATLAS job with PandaID=6682271054
[2025-06-06 11:31:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 12:37:32]  *** The last 200 lines of the pilot log: ***
[2025-06-06 12:37:32]  is_tar=False
[2025-06-06 12:37:32]  lfn=log.45006595._057161.job.log.tgz.1
[2025-06-06 12:37:32]  mtime=0
[2025-06-06 12:37:32]  protocol_id=None
[2025-06-06 12:37:32]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 12:37:32]  replicas=None
[2025-06-06 12:37:32]  scope=mc23_13p6TeV
[2025-06-06 12:37:32]  status=None
[2025-06-06 12:37:32]  status_code=0
[2025-06-06 12:37:32]  storage_token=
[2025-06-06 12:37:32]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6682271054/log.45006595._057161.job.log.tgz.1
[2025-06-06 12:37:32]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/85/b8/log.45006595._057161.job.log.tgz.1
[2025-06-06 12:37:32]  workdir=None
[2025-06-06 12:37:32] ]
[2025-06-06 12:37:32] 2025-06-06 16:36:53,540 | INFO     | transferring file log.45006595._057161.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6682271054/log.45006595._057161.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-06 12:37:32] 2025-06-06 16:36:53,540 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6682271054/log.45006595._057161.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._057161.job
[2025-06-06 12:37:32] 2025-06-06 16:36:53,562 | INFO     | adding to output.list: log.45006595._057161.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/85/b8/log.45006595._057161.job.log.tg
[2025-06-06 12:37:32] 2025-06-06 16:36:53,563 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 12:37:32] 2025-06-06 16:36:53,563 | INFO     | summary of transferred files:
[2025-06-06 12:37:32] 2025-06-06 16:36:53,564 | INFO     |  -- lfn=log.45006595._057161.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 12:37:32] 2025-06-06 16:36:53,564 | INFO     | stage-out finished correctly
[2025-06-06 12:37:32] 2025-06-06 16:36:53,753 | INFO     | monitor loop #291: job 0:6682271054 is in state 'finished'
[2025-06-06 12:37:32] 2025-06-06 16:36:53,754 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 12:37:32] 2025-06-06 16:36:55,839 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 12:37:32] 2025-06-06 16:36:55,922 | INFO     | job 6682271054 has state=finished
[2025-06-06 12:37:32] 2025-06-06 16:36:55,923 | INFO     | preparing for final server update for job 6682271054 in state='finished'
[2025-06-06 12:37:32] 2025-06-06 16:36:55,923 | INFO     | this job has now completed (state=finished)
[2025-06-06 12:37:32] 2025-06-06 16:36:55,923 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 12:37:32] 2025-06-06 16:36:55,924 | INFO     | log transfer has been attempted: DONE
[2025-06-06 12:37:32] 2025-06-06 16:36:55,924 | INFO     | job 6682271054 has finished - writing final server update
[2025-06-06 12:37:32] 2025-06-06 16:36:55,924 | INFO     | total number of processed events: 400 (read)
[2025-06-06 12:37:32] 2025-06-06 16:36:55,925 | INFO     | executing command: lscpu
[2025-06-06 12:37:32] 2025-06-06 16:36:55,950 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 12:37:32] 2025-06-06 16:36:56,256 | INFO     | monitor loop #292: job 0:6682271054 is in state 'finished'
[2025-06-06 12:37:32] 2025-06-06 16:36:56,256 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 12:37:32] 2025-06-06 16:36:58,759 | INFO     | monitor loop #293: job 0:6682271054 is in state 'finished'
[2025-06-06 12:37:32] 2025-06-06 16:36:58,759 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 12:37:32] 2025-06-06 16:36:58,837 | INFO     | 3895s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-06 12:37:32] 2025-06-06 16:37:00,594 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-06 12:37:32] 2025-06-06 16:37:00,598 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0833333333333
[2025-06-06 12:37:32] 2025-06-06 16:37:00,600 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6682271054/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 12:37:32] 2025-06-06 16:37:00,600 | INFO     | extracted standard info from prmon json
[2025-06-06 12:37:32] 2025-06-06 16:37:00,601 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 12:37:32] 2025-06-06 16:37:00,601 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 12:37:32] 2025-06-06 16:37:00,601 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 12:37:32] 2025-06-06 16:37:00,601 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 12:37:32] 2025-06-06 16:37:00,603 | INFO     | fitting pss+swap vs Time
[2025-06-06 12:37:32] 2025-06-06 16:37:00,603 | INFO     | sum of square deviations: 57407588.0
[2025-06-06 12:37:32] 2025-06-06 16:37:00,603 | INFO     | sum of deviations: -4327743087.999999
[2025-06-06 12:37:32] 2025-06-06 16:37:00,603 | INFO     | mean x: 1749225970.0
[2025-06-06 12:37:32] 2025-06-06 16:37:00,604 | INFO     | mean y: 2852275.736842105
[2025-06-06 12:37:32] 2025-06-06 16:37:00,604 | INFO     | -- intersect: 131870447915.14244
[2025-06-06 12:37:32] 2025-06-06 16:37:00,604 | INFO     | intersect: 131870447915.14244
[2025-06-06 12:37:32] 2025-06-06 16:37:00,604 | INFO     | chi2: 0.09497922776451838
[2025-06-06 12:37:32] 2025-06-06 16:37:00,604 | INFO     | -- intersect: 131870447915.14244
[2025-06-06 12:37:32] 2025-06-06 16:37:00,604 | INFO     | current memory leak: -75.39 B/s (using 57 data points, chi2=0.09)
[2025-06-06 12:37:32] 2025-06-06 16:37:00,605 | INFO     | could have reported an average CPU frequency of 2032 MHz (6 samples)
[2025-06-06 12:37:32] 2025-06-06 16:37:00,605 | INFO     | ..............................
[2025-06-06 12:37:32] 2025-06-06 16:37:00,605 | INFO     | . Timing measurements:
[2025-06-06 12:37:32] 2025-06-06 16:37:00,605 | INFO     | . get job = 0 s
[2025-06-06 12:37:32] 2025-06-06 16:37:00,605 | INFO     | . initial setup = 2 s
[2025-06-06 12:37:32] 2025-06-06 16:37:00,605 | INFO     | . payload setup = 9 s
[2025-06-06 12:37:32] 2025-06-06 16:37:00,605 | INFO     | . stage-in = 0 s
[2025-06-06 12:37:32] 2025-06-06 16:37:00,606 | INFO     | . payload execution = 3856 s
[2025-06-06 12:37:32] 2025-06-06 16:37:00,606 | INFO     | . stage-out = 0 s
[2025-06-06 12:37:32] 2025-06-06 16:37:00,606 | INFO     | . log creation = 0 s
[2025-06-06 12:37:32] 2025-06-06 16:37:00,606 | INFO     | ..............................
[2025-06-06 12:37:32] 2025-06-06 16:37:00,689 | INFO     | 
[2025-06-06 12:37:32] 2025-06-06 16:37:00,689 | INFO     | job summary report
[2025-06-06 12:37:32] 2025-06-06 16:37:00,689 | INFO     | --------------------------------------------------
[2025-06-06 12:37:32] 2025-06-06 16:37:00,689 | INFO     | PanDA job id: 6682271054
[2025-06-06 12:37:32] 2025-06-06 16:37:00,690 | INFO     | task id: 45006595
[2025-06-06 12:37:32] 2025-06-06 16:37:00,690 | INFO     | errors: (none)
[2025-06-06 12:37:32] 2025-06-06 16:37:00,690 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 12:37:32] 2025-06-06 16:37:00,690 | INFO     | pilot state: finished 
[2025-06-06 12:37:32] 2025-06-06 16:37:00,690 | INFO     | transexitcode: 0
[2025-06-06 12:37:32] 2025-06-06 16:37:00,690 | INFO     | exeerrorcode: 0
[2025-06-06 12:37:32] 2025-06-06 16:37:00,691 | INFO     | exeerrordiag: 
[2025-06-06 12:37:32] 2025-06-06 16:37:00,691 | INFO     | exitcode: 0
[2025-06-06 12:37:32] 2025-06-06 16:37:00,691 | INFO     | exitmsg: OK
[2025-06-06 12:37:32] 2025-06-06 16:37:00,691 | INFO     | cpuconsumptiontime: 41454 s
[2025-06-06 12:37:32] 2025-06-06 16:37:00,691 | INFO     | nevents: 400
[2025-06-06 12:37:32] 2025-06-06 16:37:00,691 | INFO     | neventsw: 0
[2025-06-06 12:37:32] 2025-06-06 16:37:00,692 | INFO     | pid: 14367
[2025-06-06 12:37:32] 2025-06-06 16:37:00,692 | INFO     | pgrp: 14367
[2025-06-06 12:37:32] 2025-06-06 16:37:00,692 | INFO     | corecount: 12
[2025-06-06 12:37:32] 2025-06-06 16:37:00,692 | INFO     | event service: False
[2025-06-06 12:37:32] 2025-06-06 16:37:00,692 | INFO     | sizes: {0: 2397582, 5: 2397844, 11: 2397900, 3870: 2423679, 3872: 2432620, 3874: 2432676, 3879: 2432998}
[2025-06-06 12:37:32] 2025-06-06 16:37:00,692 | INFO     | --------------------------------------------------
[2025-06-06 12:37:32] 2025-06-06 16:37:00,693 | INFO     | 
[2025-06-06 12:37:32] 2025-06-06 16:37:00,693 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-06 12:37:32] 2025-06-06 16:37:00,716 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 12:37:32] 2025-06-06 16:37:00,716 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 12:37:32] 2025-06-06 16:37:00,716 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 12:37:32] 2025-06-06 16:37:00,717 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 12:37:32] 2025-06-06 16:37:00,717 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 12:37:32] 2025-06-06 16:37:00,717 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 12:37:32] 2025-06-06 16:37:00,717 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 12:37:32] 2025-06-06 16:37:00,717 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 12:37:32] 2025-06-06 16:37:00,717 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 12:37:32] 2025-06-06 16:37:00,718 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 12:37:32] 2025-06-06 16:37:00,718 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 12:37:32] 2025-06-06 16:37:00,718 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 12:37:32] 2025-06-06 16:37:00,718 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 12:37:32] 2025-06-06 16:37:00,718 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 12:37:32] 2025-06-06 16:37:00,718 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 12:37:32] 2025-06-06 16:37:00,719 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 12:37:32] 2025-06-06 16:37:00,719 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 12:37:32] 2025-06-06 16:37:00,719 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 12:37:32] 2025-06-06 16:37:00,719 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 12:37:32] 2025-06-06 16:37:00,719 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 12:37:32] 2025-06-06 16:37:00,719 | INFO     | job 6682271054 has completed (purged errors)
[2025-06-06 12:37:32] 2025-06-06 16:37:00,720 | INFO     | overall cleanup function is called
[2025-06-06 12:37:32] 2025-06-06 16:37:01,725 | INFO     | --- collectZombieJob: --- 10, [14367]
[2025-06-06 12:37:32] 2025-06-06 16:37:01,725 | INFO     | zombie collector waiting for pid 14367
[2025-06-06 12:37:32] 2025-06-06 16:37:01,725 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 12:37:32] 2025-06-06 16:37:01,726 | INFO     | collected zombie processes
[2025-06-06 12:37:32] 2025-06-06 16:37:01,726 | INFO     | will attempt to kill all subprocesses of pid=14367
[2025-06-06 12:37:32] 2025-06-06 16:37:01,815 | INFO     | process IDs to be killed: [14367] (in reverse order)
[2025-06-06 12:37:32] 2025-06-06 16:37:01,862 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 12:37:32] 2025-06-06 16:37:01,863 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 12:37:32] 2025-06-06 16:37:01,866 | INFO     | did not find any defunct processes belonging to 14367
[2025-06-06 12:37:32] 2025-06-06 16:37:01,869 | INFO     | did not find any defunct processes belonging to 14367
[2025-06-06 12:37:32] 2025-06-06 16:37:01,869 | INFO     | ready for new job
[2025-06-06 12:37:32] 2025-06-06 16:37:01,869 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 12:37:32] 2025-06-06 16:37:01,870 | INFO     | ***************************************
[2025-06-06 12:37:32] 2025-06-06 16:37:01,871 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-06 12:37:32] 2025-06-06 16:37:01,871 | INFO     | ***************************************
[2025-06-06 12:37:32] 2025-06-06 16:37:01,871 | INFO     | 
[2025-06-06 12:37:32] 2025-06-06 16:37:01,871 | INFO     | architecture information:
[2025-06-06 12:37:32] 2025-06-06 16:37:01,872 | INFO     | executing command: cat /etc/os-release
[2025-06-06 12:37:32] 2025-06-06 16:37:01,887 | INFO     | cat /etc/os-release:
[2025-06-06 12:37:32] NAME="CentOS Linux"
[2025-06-06 12:37:32] VERSION="7 (Core)"
[2025-06-06 12:37:32] ID="centos"
[2025-06-06 12:37:32] ID_LIKE="rhel fedora"
[2025-06-06 12:37:32] VERSION_ID="7"
[2025-06-06 12:37:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 12:37:32] ANSI_COLOR="0;31"
[2025-06-06 12:37:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 12:37:32] HOME_URL="https://www.centos.org/"
[2025-06-06 12:37:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 12:37:32] 
[2025-06-06 12:37:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 12:37:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 12:37:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 12:37:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 12:37:32] 
[2025-06-06 12:37:32] 2025-06-06 16:37:01,888 | INFO     | ***************************************
[2025-06-06 12:37:32] 2025-06-06 16:37:02,391 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-06 12:37:32] 2025-06-06 16:37:02,406 | INFO     | sufficient remaining disk space (29418848256 B)
[2025-06-06 12:37:32] 2025-06-06 16:37:02,407 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 12:37:32] 2025-06-06 16:37:02,407 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 12:37:32] 2025-06-06 16:37:02,407 | INFO     | update_server=False
[2025-06-06 12:37:32] 2025-06-06 16:37:02,407 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 12:37:32] 2025-06-06 16:37:02,407 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 12:37:32] 2025-06-06 16:37:02,408 | INFO     | aborting loop
[2025-06-06 12:37:32] 2025-06-06 16:37:02,408 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 12:37:32] 2025-06-06 16:37:02,408 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 12:37:32] 2025-06-06 16:37:02,409 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 12:37:32] 2025-06-06 16:37:02,486 | INFO     | all payload control threads have been joined
[2025-06-06 12:37:32] 2025-06-06 16:37:02,648 | INFO     | all data control threads have been joined
[2025-06-06 12:37:32] 2025-06-06 16:37:02,727 | INFO     | all job control threads have been joined
[2025-06-06 12:37:32] 2025-06-06 16:37:03,411 | INFO     | [job] queue monitor thread has finished
[2025-06-06 12:37:32] 2025-06-06 16:37:03,412 | INFO     | [job] job monitor thread has finished
[2025-06-06 12:37:32] 2025-06-06 16:37:03,413 | INFO     | [job] retrieve thread has finished
[2025-06-06 12:37:32] 2025-06-06 16:37:03,443 | INFO     | [data] copytool_in thread has finished
[2025-06-06 12:37:32] 2025-06-06 16:37:03,491 | INFO     | [payload] control thread has finished
[2025-06-06 12:37:32] 2025-06-06 16:37:03,653 | INFO     | [data] control thread has finished
[2025-06-06 12:37:32] 2025-06-06 16:37:03,729 | INFO     | [job] control thread has finished
[2025-06-06 12:37:32] 2025-06-06 16:37:03,946 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 12:37:32] 2025-06-06 16:37:04,052 | INFO     | [payload] validate_post thread has finished
[2025-06-06 12:37:32] 2025-06-06 16:37:04,208 | INFO     | [job] validate thread has finished
[2025-06-06 12:37:32] 2025-06-06 16:37:04,415 | INFO     | [data] copytool_out thread has finished
[2025-06-06 12:37:32] 2025-06-06 16:37:04,579 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 12:37:32] 2025-06-06 16:37:04,706 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 12:37:32] 2025-06-06 16:37:04,764 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 12:37:32] 2025-06-06 16:37:04,826 | INFO     | [payload] failed_post thread has finished
[2025-06-06 12:37:32] 2025-06-06 16:37:06,415 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 12:37:32] 2025-06-06 16:37:08,047 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140191259465536)>', '<ExcThread(monitor, started 140190517540608)>']
[2025-06-06 12:37:32] 2025-06-06 16:37:13,051 | INFO     | all workflow threads have been joined
[2025-06-06 12:37:32] 2025-06-06 16:37:13,051 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 12:37:32] 2025-06-06 16:37:13,052 | INFO     | traces error code: 0
[2025-06-06 12:37:32] 2025-06-06 16:37:13,052 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 12:37:32] 2025-06-06 16:37:32,042 | INFO     | PID=7959 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-06 12:37:32] 2025-06-06 16:37:32,042 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 12:37:32] 2025-06-06 16:37:32,042 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 12:37:32] 2025-06-06 16:37:32,042 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 12:37:32] 2025-06-06 16:37:32,042 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 12:37:32] 2025-06-06 16:37:32,042 | INFO     | [monitor] control thread has ended
[2025-06-06 12:37:32] 2025-06-06 16:37:32,131 [wrapper] ==== pilot stdout END ====
[2025-06-06 12:37:32] 2025-06-06 16:37:32,135 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 12:37:32] 2025-06-06 16:37:32,138 [wrapper] pilotpid: 7959
[2025-06-06 12:37:32] 2025-06-06 16:37:32,142 [wrapper] Pilot exit status: 0
[2025-06-06 12:37:32] 2025-06-06 16:37:32,157 [wrapper] pandaids: 6682271054
[2025-06-06 12:37:32] 2025-06-06 16:37:32,197 [wrapper] cleanup supervisor_pilot 25645 7960
[2025-06-06 12:37:32] 2025-06-06 16:37:32,201 [wrapper] Test setup, not cleaning
[2025-06-06 12:37:32] 2025-06-06 16:37:32,205 [wrapper] apfmon messages muted
[2025-06-06 12:37:32] 2025-06-06 16:37:32,209 [wrapper] ==== wrapper stdout END ====
[2025-06-06 12:37:32] 2025-06-06 16:37:32,212 [wrapper] ==== wrapper stderr END ====
[2025-06-06 12:37:32]  *** Error codes and diagnostics ***
[2025-06-06 12:37:32]     "exeErrorCode": 0,
[2025-06-06 12:37:32]     "exeErrorDiag": "",
[2025-06-06 12:37:32]     "pilotErrorCode": 0,
[2025-06-06 12:37:32]     "pilotErrorDiag": "",
[2025-06-06 12:37:32]  *** Listing of results directory ***
[2025-06-06 12:37:32] total 391380
[2025-06-06 12:37:32] -rw-r--r-- 1 boincer umatlas    529402 Jun  6 11:12 pilot3.tar.gz
[2025-06-06 12:37:32] -rwx------ 1 boincer umatlas     37140 Jun  6 11:31 runpilot2-wrapper.sh
[2025-06-06 12:37:32] -rw-r--r-- 1 boincer umatlas      5112 Jun  6 11:31 queuedata.json
[2025-06-06 12:37:32] -rw-r--r-- 1 boincer umatlas       100 Jun  6 11:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 12:37:32] -rwxr-xr-x 1 boincer umatlas      7986 Jun  6 11:31 run_atlas
[2025-06-06 12:37:32] -rw-r--r-- 1 boincer umatlas       105 Jun  6 11:31 job.xml
[2025-06-06 12:37:32] -rw-r--r-- 2 boincer umatlas 214786920 Jun  6 11:31 EVNT.45006593._002209.pool.root.1
[2025-06-06 12:37:32] -rw-r--r-- 2 boincer umatlas     15095 Jun  6 11:31 start_atlas.sh
[2025-06-06 12:37:32] drwxrwx--x 2 boincer umatlas      4096 Jun  6 11:31 shared
[2025-06-06 12:37:32] -rw-r--r-- 2 boincer umatlas    541913 Jun  6 11:31 input.tar.gz
[2025-06-06 12:37:32] -rw-r--r-- 1 boincer umatlas         0 Jun  6 11:31 boinc_lockfile
[2025-06-06 12:37:32] -rw-r--r-- 1 boincer umatlas      2524 Jun  6 11:31 pandaJob.out
[2025-06-06 12:37:32] -rw------- 1 boincer umatlas    985740 Jun  6 11:32 agis_schedconf.cvmfs.json
[2025-06-06 12:37:32] -rw------- 1 boincer umatlas   1598969 Jun  6 11:32 agis_ddmendpoints.agis.ALL.json
[2025-06-06 12:37:32] drwx------ 4 boincer umatlas      4096 Jun  6 11:32 pilot3
[2025-06-06 12:37:32] -rw-r--r-- 1 boincer umatlas      5867 Jun  6 12:27 init_data.xml
[2025-06-06 12:37:32] -rw------- 1 boincer umatlas 180600085 Jun  6 12:36 HITS.45006595._057161.pool.root.1
[2025-06-06 12:37:32] -rw-r--r-- 1 boincer umatlas       530 Jun  6 12:36 boinc_task_state.xml
[2025-06-06 12:37:32] -rw------- 1 boincer umatlas      1045 Jun  6 12:36 memory_monitor_summary.json
[2025-06-06 12:37:32] -rw------- 1 boincer umatlas    362251 Jun  6 12:36 log.45006595._057161.job.log.tgz.1
[2025-06-06 12:37:32] -rw------- 1 boincer umatlas        95 Jun  6 12:36 pilot_heartbeat.json
[2025-06-06 12:37:32] -rw------- 1 boincer umatlas      7778 Jun  6 12:37 heartbeat.json
[2025-06-06 12:37:32] -rw-r--r-- 1 boincer umatlas      8192 Jun  6 12:37 boinc_mmap_file
[2025-06-06 12:37:32] -rw-r--r-- 1 boincer umatlas        27 Jun  6 12:37 wrapper_checkpoint.txt
[2025-06-06 12:37:32] -rw------- 1 boincer umatlas       744 Jun  6 12:37 pilotlog.txt
[2025-06-06 12:37:32] -rw------- 1 boincer umatlas    382881 Jun  6 12:37 log.45006595._057161.job.log.1
[2025-06-06 12:37:32] -rw------- 1 boincer umatlas       357 Jun  6 12:37 output.list
[2025-06-06 12:37:32] -rw-r--r-- 1 boincer umatlas       620 Jun  6 12:37 runtime_log
[2025-06-06 12:37:32] -rw------- 1 boincer umatlas    768000 Jun  6 12:37 result.tar.gz
[2025-06-06 12:37:32] -rw-r--r-- 1 boincer umatlas      8657 Jun  6 12:37 runtime_log.err
[2025-06-06 12:37:32] -rw------- 1 boincer umatlas       658 Jun  6 12:37 1UTLDmaDoh7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm96nKDm7YV2So.diag
[2025-06-06 12:37:32] -rw-r--r-- 1 boincer umatlas     21600 Jun  6 12:37 stderr.txt
[2025-06-06 12:37:32] HITS file was successfully produced:
[2025-06-06 12:37:32] -rw------- 1 boincer umatlas 180600085 Jun  6 12:36 shared/HITS.pool.root.1
[2025-06-06 12:37:32]  *** Contents of shared directory: ***
[2025-06-06 12:37:32] total 387428
[2025-06-06 12:37:32] -rw-r--r-- 2 boincer umatlas 214786920 Jun  6 11:31 ATLAS.root_0
[2025-06-06 12:37:32] -rw-r--r-- 2 boincer umatlas     15095 Jun  6 11:31 start_atlas.sh
[2025-06-06 12:37:32] -rw-r--r-- 2 boincer umatlas    541913 Jun  6 11:31 input.tar.gz
[2025-06-06 12:37:32] -rw------- 1 boincer umatlas 180600085 Jun  6 12:36 HITS.pool.root.1
[2025-06-06 12:37:32] -rw------- 1 boincer umatlas    768000 Jun  6 12:37 result.tar.gz
12:37:33 (3417): run_atlas exited; CPU time 41425.315593
12:37:33 (3417): called boinc_finish(0)

</stderr_txt>
]]>

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