Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:23:28 (4148477): wrapper (7.7.26015): starting
11:23:28 (4148477): wrapper: running run_atlas (--nthreads 12)
[2025-06-06 11:23:28] Arguments: --nthreads 12
[2025-06-06 11:23:28] Threads: 12
[2025-06-06 11:23:28] Checking for CVMFS
[2025-06-06 11:23:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 11:23:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 11:23:28] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 11:23:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 11:23:28] 2.12.6.0 32194 3871 159184 146867 2 151 26922116 32935937 10987 16776704 0 15399391 99.668 12120915 35271 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-06 11:23:28] CVMFS is ok
[2025-06-06 11:23:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 11:23:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 11:23:28] Further information can be found at the LHC@home message board.
[2025-06-06 11:23:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 11:23:28] Checking for apptainer binary...
[2025-06-06 11:23:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 11:23:28] Running /usr/bin/apptainer --version
[2025-06-06 11:23:28] apptainer version 1.4.1-1.el9
[2025-06-06 11:23:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 11:23:29] c6-1-24-4.aglt2.org
[2025-06-06 11:23:29] apptainer works
[2025-06-06 11:23:29] Set ATHENA_PROC_NUMBER=12
[2025-06-06 11:23:29] Set ATHENA_CORE_NUMBER=12
[2025-06-06 11:23:29] Starting ATLAS job with PandaID=6669624289
[2025-06-06 11:23:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 12:34:10]  *** The last 200 lines of the pilot log: ***
[2025-06-06 12:34:10]  status_code=0
[2025-06-06 12:34:10]  storage_token=
[2025-06-06 12:34:10]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6669624289/log.44871837._098125.job.log.tgz.1
[2025-06-06 12:34:10]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ea/cb/log.44871837._098125.job.log.tgz.1
[2025-06-06 12:34:10]  workdir=None
[2025-06-06 12:34:10] ]
[2025-06-06 12:34:10] 2025-06-06 16:33:46,355 | INFO     | transferring file log.44871837._098125.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6669624289/log.44871837._098125.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-06 12:34:10] 2025-06-06 16:33:46,355 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6669624289/log.44871837._098125.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._098125.job
[2025-06-06 12:34:10] 2025-06-06 16:33:46,377 | INFO     | adding to output.list: log.44871837._098125.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ea/cb/log.44871837._098125.job.log.tg
[2025-06-06 12:34:10] 2025-06-06 16:33:46,378 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 12:34:10] 2025-06-06 16:33:46,378 | INFO     | summary of transferred files:
[2025-06-06 12:34:10] 2025-06-06 16:33:46,378 | INFO     |  -- lfn=log.44871837._098125.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 12:34:10] 2025-06-06 16:33:46,378 | INFO     | stage-out finished correctly
[2025-06-06 12:34:10] 2025-06-06 16:33:47,922 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 12:34:10] 2025-06-06 16:33:48,054 | INFO     | job 6669624289 has state=finished
[2025-06-06 12:34:10] 2025-06-06 16:33:48,054 | INFO     | preparing for final server update for job 6669624289 in state='finished'
[2025-06-06 12:34:10] 2025-06-06 16:33:48,055 | INFO     | this job has now completed (state=finished)
[2025-06-06 12:34:10] 2025-06-06 16:33:48,055 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 12:34:10] 2025-06-06 16:33:48,055 | INFO     | log transfer has been attempted: DONE
[2025-06-06 12:34:10] 2025-06-06 16:33:48,055 | INFO     | job 6669624289 has finished - writing final server update
[2025-06-06 12:34:10] 2025-06-06 16:33:48,055 | INFO     | total number of processed events: 400 (read)
[2025-06-06 12:34:10] 2025-06-06 16:33:48,071 | INFO     | executing command: lscpu
[2025-06-06 12:34:10] 2025-06-06 16:33:48,111 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 12:34:10] 2025-06-06 16:33:50,017 | INFO     | PID=4153522 has CPU usage=10.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-06 12:34:10] 2025-06-06 16:33:50,017 | INFO     | .. there are 15 such processes running
[2025-06-06 12:34:10] 2025-06-06 16:33:50,082 | WARNING  | process 4161294 can no longer be monitored (due to stat problems) - aborting
[2025-06-06 12:34:10] 2025-06-06 16:33:50,082 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6669624289/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 12:34:10] 2025-06-06 16:33:50,083 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6669624289/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 12:34:10] 2025-06-06 16:33:50,084 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4638598 B
[2025-06-06 12:34:10] 2025-06-06 16:33:50,084 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15548 B
[2025-06-06 12:34:10] 2025-06-06 16:33:50,084 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-06 12:34:10] 2025-06-06 16:33:52,030 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-06 12:34:10] 2025-06-06 16:33:52,030 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6669624289/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 12:34:10] 2025-06-06 16:33:52,035 | INFO     | extracted standard info from prmon json
[2025-06-06 12:34:10] 2025-06-06 16:33:52,036 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 12:34:10] 2025-06-06 16:33:52,036 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 12:34:10] 2025-06-06 16:33:52,037 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 12:34:10] 2025-06-06 16:33:52,037 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 12:34:10] 2025-06-06 16:33:52,039 | INFO     | fitting pss+swap vs Time
[2025-06-06 12:34:10] 2025-06-06 16:33:52,039 | INFO     | sum of square deviations: 73882315.5
[2025-06-06 12:34:10] 2025-06-06 16:33:52,040 | INFO     | sum of deviations: -7747975634.0
[2025-06-06 12:34:10] 2025-06-06 16:33:52,040 | INFO     | mean x: 1749225608.5
[2025-06-06 12:34:10] 2025-06-06 16:33:52,040 | INFO     | mean y: 2715807.0
[2025-06-06 12:34:10] 2025-06-06 16:33:52,040 | INFO     | -- intersect: 183442518705.7982
[2025-06-06 12:34:10] 2025-06-06 16:33:52,040 | INFO     | intersect: 183442518705.7982
[2025-06-06 12:34:10] 2025-06-06 16:33:52,040 | INFO     | chi2: 0.18359557627106288
[2025-06-06 12:34:10] 2025-06-06 16:33:52,040 | INFO     | -- intersect: 183442518705.7982
[2025-06-06 12:34:10] 2025-06-06 16:33:52,041 | INFO     | current memory leak: -104.87 B/s (using 62 data points, chi2=0.18)
[2025-06-06 12:34:10] 2025-06-06 16:33:52,041 | INFO     | ..............................
[2025-06-06 12:34:10] 2025-06-06 16:33:52,041 | INFO     | . Timing measurements:
[2025-06-06 12:34:10] 2025-06-06 16:33:52,041 | INFO     | . get job = 0 s
[2025-06-06 12:34:10] 2025-06-06 16:33:52,041 | INFO     | . initial setup = 2 s
[2025-06-06 12:34:10] 2025-06-06 16:33:52,041 | INFO     | . payload setup = 6 s
[2025-06-06 12:34:10] 2025-06-06 16:33:52,041 | INFO     | . stage-in = 0 s
[2025-06-06 12:34:10] 2025-06-06 16:33:52,041 | INFO     | . payload execution = 4182 s
[2025-06-06 12:34:10] 2025-06-06 16:33:52,041 | INFO     | . stage-out = 0 s
[2025-06-06 12:34:10] 2025-06-06 16:33:52,042 | INFO     | . log creation = 0 s
[2025-06-06 12:34:10] 2025-06-06 16:33:52,042 | INFO     | ..............................
[2025-06-06 12:34:10] 2025-06-06 16:33:52,081 | INFO     | sufficient remaining disk space (76476841984 B)
[2025-06-06 12:34:10] 2025-06-06 16:33:52,097 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-06 12:34:10] 2025-06-06 16:33:52,127 | INFO     | 
[2025-06-06 12:34:10] 2025-06-06 16:33:52,127 | INFO     | job summary report
[2025-06-06 12:34:10] 2025-06-06 16:33:52,127 | INFO     | --------------------------------------------------
[2025-06-06 12:34:10] 2025-06-06 16:33:52,128 | INFO     | PanDA job id: 6669624289
[2025-06-06 12:34:10] 2025-06-06 16:33:52,128 | INFO     | task id: 44871837
[2025-06-06 12:34:10] 2025-06-06 16:33:52,128 | INFO     | errors: (none)
[2025-06-06 12:34:10] 2025-06-06 16:33:52,128 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 12:34:10] 2025-06-06 16:33:52,128 | INFO     | pilot state: finished 
[2025-06-06 12:34:10] 2025-06-06 16:33:52,129 | INFO     | transexitcode: 0
[2025-06-06 12:34:10] 2025-06-06 16:33:52,129 | INFO     | exeerrorcode: 0
[2025-06-06 12:34:10] 2025-06-06 16:33:52,129 | INFO     | exeerrordiag: 
[2025-06-06 12:34:10] 2025-06-06 16:33:52,129 | INFO     | exitcode: 0
[2025-06-06 12:34:10] 2025-06-06 16:33:52,129 | INFO     | exitmsg: OK
[2025-06-06 12:34:10] 2025-06-06 16:33:52,130 | INFO     | cpuconsumptiontime: 45167 s
[2025-06-06 12:34:10] 2025-06-06 16:33:52,130 | INFO     | nevents: 400
[2025-06-06 12:34:10] 2025-06-06 16:33:52,130 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6669624289: 4934857 B (within 2537553920 B limit)
[2025-06-06 12:34:10] 2025-06-06 16:33:52,130 | INFO     | neventsw: 0
[2025-06-06 12:34:10] 2025-06-06 16:33:52,131 | INFO     | pid: 4161294
[2025-06-06 12:34:10] 2025-06-06 16:33:52,131 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6669624289/HITS.44871837._098125.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-06 12:34:10] 2025-06-06 16:33:52,131 | INFO     | pgrp: 4161294
[2025-06-06 12:34:10] 2025-06-06 16:33:52,131 | INFO     | total size of present files: 0 B (workdir size: 4934857 B)
[2025-06-06 12:34:10] 2025-06-06 16:33:52,131 | INFO     | corecount: 12
[2025-06-06 12:34:10] 2025-06-06 16:33:52,132 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6669624289/HITS.44871837._098125.pool.root.1 since it does not exist
[2025-06-06 12:34:10] 2025-06-06 16:33:52,132 | INFO     | event service: False
[2025-06-06 12:34:10] 2025-06-06 16:33:52,132 | INFO     | sizes: {0: 2397341, 4: 2397547, 11: 2397575, 4192: 2423436, 4194: 2432377, 4195: 2432433, 4199: 2432731}
[2025-06-06 12:34:10] 2025-06-06 16:33:52,133 | INFO     | --------------------------------------------------
[2025-06-06 12:34:10] 2025-06-06 16:33:52,133 | INFO     | 
[2025-06-06 12:34:10] 2025-06-06 16:33:52,133 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-06 12:34:10] 2025-06-06 16:33:52,152 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 12:34:10] 2025-06-06 16:33:52,153 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 12:34:10] 2025-06-06 16:33:52,153 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 12:34:10] 2025-06-06 16:33:52,153 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 12:34:10] 2025-06-06 16:33:52,153 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 12:34:10] 2025-06-06 16:33:52,153 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 12:34:10] 2025-06-06 16:33:52,153 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 12:34:10] 2025-06-06 16:33:52,153 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 12:34:10] 2025-06-06 16:33:52,153 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 12:34:10] 2025-06-06 16:33:52,154 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 12:34:10] 2025-06-06 16:33:52,154 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 12:34:10] 2025-06-06 16:33:52,154 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 12:34:10] 2025-06-06 16:33:52,154 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 12:34:10] 2025-06-06 16:33:52,154 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 12:34:10] 2025-06-06 16:33:52,154 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 12:34:10] 2025-06-06 16:33:52,154 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 12:34:10] 2025-06-06 16:33:52,154 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 12:34:10] 2025-06-06 16:33:52,154 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 12:34:10] 2025-06-06 16:33:52,155 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 12:34:10] 2025-06-06 16:33:52,155 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 12:34:10] 2025-06-06 16:33:52,155 | INFO     | job 6669624289 has completed (purged errors)
[2025-06-06 12:34:10] 2025-06-06 16:33:52,156 | INFO     | overall cleanup function is called
[2025-06-06 12:34:10] 2025-06-06 16:33:52,314 | INFO     | number of running child processes to parent process 4161294: 1
[2025-06-06 12:34:10] 2025-06-06 16:33:52,315 | INFO     | maximum number of monitored processes: 6
[2025-06-06 12:34:10] 2025-06-06 16:33:52,315 | INFO     | aborting job monitoring since job object (job id=6669624289) has expired
[2025-06-06 12:34:10] 2025-06-06 16:33:53,164 | INFO     | --- collectZombieJob: --- 10, [4161294]
[2025-06-06 12:34:10] 2025-06-06 16:33:53,164 | INFO     | zombie collector waiting for pid 4161294
[2025-06-06 12:34:10] 2025-06-06 16:33:53,164 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 12:34:10] 2025-06-06 16:33:53,165 | INFO     | collected zombie processes
[2025-06-06 12:34:10] 2025-06-06 16:33:53,165 | INFO     | will attempt to kill all subprocesses of pid=4161294
[2025-06-06 12:34:10] 2025-06-06 16:33:53,321 | INFO     | process IDs to be killed: [4161294] (in reverse order)
[2025-06-06 12:34:10] 2025-06-06 16:33:53,403 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 12:34:10] 2025-06-06 16:33:53,403 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 12:34:10] 2025-06-06 16:33:53,412 | INFO     | did not find any defunct processes belonging to 4161294
[2025-06-06 12:34:10] 2025-06-06 16:33:53,422 | INFO     | did not find any defunct processes belonging to 4161294
[2025-06-06 12:34:10] 2025-06-06 16:33:53,422 | INFO     | ready for new job
[2025-06-06 12:34:10] 2025-06-06 16:33:53,422 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 12:34:10] 2025-06-06 16:33:53,423 | INFO     | **************************************
[2025-06-06 12:34:10] 2025-06-06 16:33:53,424 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 12:34:10] 2025-06-06 16:33:53,424 | INFO     | **************************************
[2025-06-06 12:34:10] 2025-06-06 16:33:53,424 | INFO     | 
[2025-06-06 12:34:10] 2025-06-06 16:33:53,439 | INFO     | architecture information:
[2025-06-06 12:34:10] 2025-06-06 16:33:53,439 | INFO     | executing command: cat /etc/os-release
[2025-06-06 12:34:10] 2025-06-06 16:33:53,454 | INFO     | cat /etc/os-release:
[2025-06-06 12:34:10] NAME="CentOS Linux"
[2025-06-06 12:34:10] VERSION="7 (Core)"
[2025-06-06 12:34:10] ID="centos"
[2025-06-06 12:34:10] ID_LIKE="rhel fedora"
[2025-06-06 12:34:10] VERSION_ID="7"
[2025-06-06 12:34:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 12:34:10] ANSI_COLOR="0;31"
[2025-06-06 12:34:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 12:34:10] HOME_URL="https://www.centos.org/"
[2025-06-06 12:34:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 12:34:10] 
[2025-06-06 12:34:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 12:34:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 12:34:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 12:34:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 12:34:10] 
[2025-06-06 12:34:10] 2025-06-06 16:33:53,454 | INFO     | **************************************
[2025-06-06 12:34:10] 2025-06-06 16:33:53,956 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-06 12:34:10] 2025-06-06 16:33:53,971 | INFO     | sufficient remaining disk space (76482084864 B)
[2025-06-06 12:34:10] 2025-06-06 16:33:53,971 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 12:34:10] 2025-06-06 16:33:53,971 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 12:34:10] 2025-06-06 16:33:53,971 | INFO     | update_server=False
[2025-06-06 12:34:10] 2025-06-06 16:33:53,971 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 12:34:10] 2025-06-06 16:33:53,972 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 12:34:10] 2025-06-06 16:33:53,972 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 12:34:10] 2025-06-06 16:33:53,972 | INFO     | aborting loop
[2025-06-06 12:34:10] 2025-06-06 16:33:54,016 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 12:34:10] 2025-06-06 16:33:54,028 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 12:34:10] 2025-06-06 16:33:54,028 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 12:34:10] 2025-06-06 16:33:54,028 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 12:34:10] 2025-06-06 16:33:54,224 | INFO     | all data control threads have been joined
[2025-06-06 12:34:10] 2025-06-06 16:33:54,489 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 12:34:10] 2025-06-06 16:33:54,669 | INFO     | all payload control threads have been joined
[2025-06-06 12:34:10] 2025-06-06 16:33:54,976 | INFO     | [job] retrieve thread has finished
[2025-06-06 12:34:10] 2025-06-06 16:33:54,977 | INFO     | [job] job monitor thread has finished
[2025-06-06 12:34:10] 2025-06-06 16:33:54,977 | INFO     | [job] queue monitor thread has finished
[2025-06-06 12:34:10] 2025-06-06 16:33:55,082 | INFO     | [data] copytool_in thread has finished
[2025-06-06 12:34:10] 2025-06-06 16:33:55,229 | INFO     | [data] control thread has finished
[2025-06-06 12:34:10] 2025-06-06 16:33:55,242 | INFO     | all job control threads have been joined
[2025-06-06 12:34:10] 2025-06-06 16:33:55,460 | INFO     | [payload] validate_post thread has finished
[2025-06-06 12:34:10] 2025-06-06 16:33:55,674 | INFO     | [payload] control thread has finished
[2025-06-06 12:34:10] 2025-06-06 16:33:55,845 | INFO     | [job] validate thread has finished
[2025-06-06 12:34:10] 2025-06-06 16:33:55,929 | INFO     | [payload] failed_post thread has finished
[2025-06-06 12:34:10] 2025-06-06 16:33:55,981 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 12:34:10] 2025-06-06 16:33:56,193 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 12:34:10] 2025-06-06 16:33:56,247 | INFO     | [job] control thread has finished
[2025-06-06 12:34:10] 2025-06-06 16:33:56,347 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 12:34:10] 2025-06-06 16:33:56,494 | INFO     | [data] copytool_out thread has finished
[2025-06-06 12:34:10] 2025-06-06 16:33:58,021 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 12:34:10] 2025-06-06 16:34:04,216 | INFO     | job.realtimelogging is not enabled
[2025-06-06 12:34:10] 2025-06-06 16:34:05,222 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 12:34:10] 2025-06-06 16:34:05,315 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139726477825856)>', '<ExcThread(monitor, started 139725989984000)>']
[2025-06-06 12:34:10] 2025-06-06 16:34:06,088 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 12:34:10] 2025-06-06 16:34:06,088 | INFO     | [monitor] control thread has ended
[2025-06-06 12:34:10] 2025-06-06 16:34:10,340 | INFO     | all workflow threads have been joined
[2025-06-06 12:34:10] 2025-06-06 16:34:10,341 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 12:34:10] 2025-06-06 16:34:10,341 | INFO     | traces error code: 0
[2025-06-06 12:34:10] 2025-06-06 16:34:10,341 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 12:34:10] 2025-06-06 16:34:10,520 [wrapper] ==== pilot stdout END ====
[2025-06-06 12:34:10] 2025-06-06 16:34:10,523 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 12:34:10] 2025-06-06 16:34:10,525 [wrapper] pilotpid: 4153522
[2025-06-06 12:34:10] 2025-06-06 16:34:10,527 [wrapper] Pilot exit status: 0
[2025-06-06 12:34:10] 2025-06-06 16:34:10,536 [wrapper] pandaids: 6669624289
[2025-06-06 12:34:10] 2025-06-06 16:34:10,576 [wrapper] cleanup supervisor_pilot  112688 4153524
[2025-06-06 12:34:10] 2025-06-06 16:34:10,578 [wrapper] Test setup, not cleaning
[2025-06-06 12:34:10] 2025-06-06 16:34:10,580 [wrapper] apfmon messages muted
[2025-06-06 12:34:10] 2025-06-06 16:34:10,582 [wrapper] ==== wrapper stdout END ====
[2025-06-06 12:34:10] 2025-06-06 16:34:10,584 [wrapper] ==== wrapper stderr END ====
[2025-06-06 12:34:10]  *** Error codes and diagnostics ***
[2025-06-06 12:34:10]     "exeErrorCode": 0,
[2025-06-06 12:34:10]     "exeErrorDiag": "",
[2025-06-06 12:34:10]     "pilotErrorCode": 0,
[2025-06-06 12:34:10]     "pilotErrorDiag": "",
[2025-06-06 12:34:10]  *** Listing of results directory ***
[2025-06-06 12:34:10] total 413796
[2025-06-06 12:34:10] -rw-r--r--. 1 boincer umatlas    495897 May 29 05:08 pilot3.tar.gz
[2025-06-06 12:34:10] -rwx------. 1 boincer umatlas     37140 May 29 05:20 runpilot2-wrapper.sh
[2025-06-06 12:34:10] -rw-r--r--. 1 boincer umatlas      5111 May 29 05:20 queuedata.json
[2025-06-06 12:34:10] -rw-r--r--. 1 boincer umatlas       100 Jun  6 11:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 12:34:10] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  6 11:23 run_atlas
[2025-06-06 12:34:10] -rw-r--r--. 1 boincer umatlas       105 Jun  6 11:23 job.xml
[2025-06-06 12:34:10] -rw-r--r--. 2 boincer umatlas 221837948 Jun  6 11:23 EVNT.44871834._003730.pool.root.1
[2025-06-06 12:34:10] -rw-r--r--. 2 boincer umatlas     15093 Jun  6 11:23 start_atlas.sh
[2025-06-06 12:34:10] drwxrwx--x. 2 boincer umatlas      4096 Jun  6 11:23 shared
[2025-06-06 12:34:10] -rw-r--r--. 2 boincer umatlas    508871 Jun  6 11:23 input.tar.gz
[2025-06-06 12:34:10] -rw-r--r--. 1 boincer umatlas         0 Jun  6 11:23 boinc_lockfile
[2025-06-06 12:34:10] -rw-r--r--. 1 boincer umatlas      2558 Jun  6 11:23 pandaJob.out
[2025-06-06 12:34:10] -rw-------. 1 boincer umatlas    985740 Jun  6 11:23 agis_schedconf.cvmfs.json
[2025-06-06 12:34:10] -rw-------. 1 boincer umatlas   1598969 Jun  6 11:23 agis_ddmendpoints.agis.ALL.json
[2025-06-06 12:34:10] drwx------. 4 boincer umatlas      4096 Jun  6 11:23 pilot3
[2025-06-06 12:34:10] -rw-r--r--. 1 boincer umatlas      6839 Jun  6 12:28 init_data.xml
[2025-06-06 12:34:10] -rw-------. 1 boincer umatlas 196452590 Jun  6 12:33 HITS.44871837._098125.pool.root.1
[2025-06-06 12:34:10] -rw-r--r--. 1 boincer umatlas       529 Jun  6 12:33 boinc_task_state.xml
[2025-06-06 12:34:10] -rw-------. 1 boincer umatlas      1039 Jun  6 12:33 memory_monitor_summary.json
[2025-06-06 12:34:10] -rw-------. 1 boincer umatlas    375352 Jun  6 12:33 log.44871837._098125.job.log.tgz.1
[2025-06-06 12:34:10] -rw-------. 1 boincer umatlas      7726 Jun  6 12:33 heartbeat.json
[2025-06-06 12:34:10] -rw-------. 1 boincer umatlas        95 Jun  6 12:33 pilot_heartbeat.json
[2025-06-06 12:34:10] -rw-r--r--. 1 boincer umatlas      8192 Jun  6 12:34 boinc_mmap_file
[2025-06-06 12:34:10] -rw-r--r--. 1 boincer umatlas        27 Jun  6 12:34 wrapper_checkpoint.txt
[2025-06-06 12:34:10] -rw-------. 1 boincer umatlas      4425 Jun  6 12:34 pilotlog.txt
[2025-06-06 12:34:10] -rw-------. 1 boincer umatlas    426130 Jun  6 12:34 log.44871837._098125.job.log.1
[2025-06-06 12:34:10] -rw-------. 1 boincer umatlas       357 Jun  6 12:34 output.list
[2025-06-06 12:34:10] -rw-r--r--. 1 boincer umatlas       620 Jun  6 12:34 runtime_log
[2025-06-06 12:34:10] -rw-------. 1 boincer umatlas    819200 Jun  6 12:34 result.tar.gz
[2025-06-06 12:34:10] -rw-r--r--. 1 boincer umatlas      8666 Jun  6 12:34 runtime_log.err
[2025-06-06 12:34:10] -rw-------. 1 boincer umatlas       654 Jun  6 12:34 Cd0KDmNcoe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmiEeKDmTQecCn.diag
[2025-06-06 12:34:10] -rw-r--r--. 1 boincer umatlas     22356 Jun  6 12:34 stderr.txt
[2025-06-06 12:34:10] HITS file was successfully produced:
[2025-06-06 12:34:10] -rw-------. 1 boincer umatlas 196452590 Jun  6 12:33 shared/HITS.pool.root.1
[2025-06-06 12:34:10]  *** Contents of shared directory: ***
[2025-06-06 12:34:10] total 409816
[2025-06-06 12:34:10] -rw-r--r--. 2 boincer umatlas 221837948 Jun  6 11:23 ATLAS.root_0
[2025-06-06 12:34:10] -rw-r--r--. 2 boincer umatlas     15093 Jun  6 11:23 start_atlas.sh
[2025-06-06 12:34:10] -rw-r--r--. 2 boincer umatlas    508871 Jun  6 11:23 input.tar.gz
[2025-06-06 12:34:10] -rw-------. 1 boincer umatlas 196452590 Jun  6 12:33 HITS.pool.root.1
[2025-06-06 12:34:10] -rw-------. 1 boincer umatlas    819200 Jun  6 12:34 result.tar.gz
12:34:11 (4148477): run_atlas exited; CPU time 45246.116908
12:34:11 (4148477): called boinc_finish(0)

</stderr_txt>
]]>

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