Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:19:06 (29886): wrapper (7.7.26015): starting
17:19:06 (29886): wrapper: running run_atlas (--nthreads 8)
[2025-06-06 17:19:06] Arguments: --nthreads 8
[2025-06-06 17:19:06] Threads: 8
[2025-06-06 17:19:06] Checking for CVMFS
[2025-06-06 17:19:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 17:19:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 17:19:09] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 17:19:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 17:19:10] 2.11.2.0 14339 36440 82692 146867 0 55 23924287 25165825 4002 130560 0 21942142 99.749 28285001 4883 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-06 17:19:10] CVMFS is ok
[2025-06-06 17:19:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 17:19:10] Checking for apptainer binary...
[2025-06-06 17:19:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 17:19:10] Running /usr/bin/apptainer --version
[2025-06-06 17:19:10] apptainer version 1.3.2-1.el7
[2025-06-06 17:19:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 17:19:37] cg-vwn496.simple-grid.lan
[2025-06-06 17:19:37] apptainer works
[2025-06-06 17:19:37] Set ATHENA_PROC_NUMBER=8
[2025-06-06 17:19:37] Set ATHENA_CORE_NUMBER=8
[2025-06-06 17:19:37] Starting ATLAS job with PandaID=6677862071
[2025-06-06 17:19:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 20:42:12]  *** The last 200 lines of the pilot log: ***
[2025-06-06 20:42:12] 2025-06-06 18:41:55,553 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 20:42:12] 2025-06-06 18:41:55,553 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 20:42:12] 2025-06-06 18:41:55,554 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 20:42:12] 2025-06-06 18:41:55,554 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 20:42:12] 2025-06-06 18:41:55,558 | INFO     | fitting pss+swap vs Time
[2025-06-06 20:42:12] 2025-06-06 18:41:55,558 | INFO     | sum of square deviations: 2126802667.5
[2025-06-06 20:42:12] 2025-06-06 18:41:55,560 | INFO     | sum of deviations: 41903065194.999985
[2025-06-06 20:42:12] 2025-06-06 18:41:55,560 | INFO     | mean x: 1749229482.5
[2025-06-06 20:42:12] 2025-06-06 18:41:55,560 | INFO     | mean y: 2460053.8210526314
[2025-06-06 20:42:12] 2025-06-06 18:41:55,560 | INFO     | -- intersect: -34461516396.0362
[2025-06-06 20:42:12] 2025-06-06 18:41:55,560 | INFO     | intersect: -34461516396.0362
[2025-06-06 20:42:12] 2025-06-06 18:41:55,560 | INFO     | chi2: 5.218329066069093
[2025-06-06 20:42:12] 2025-06-06 18:41:55,561 | INFO     | sum of square deviations: 1963274020.0
[2025-06-06 20:42:12] 2025-06-06 18:41:55,562 | INFO     | sum of deviations: 40884505739.00001
[2025-06-06 20:42:12] 2025-06-06 18:41:55,562 | INFO     | mean x: 1749229330.0
[2025-06-06 20:42:12] 2025-06-06 18:41:55,562 | INFO     | mean y: 2459103.7351351352
[2025-06-06 20:42:12] 2025-06-06 18:41:55,562 | INFO     | -- intersect: -36424639636.77187
[2025-06-06 20:42:12] 2025-06-06 18:41:55,563 | INFO     | intersect: -36424639636.77187
[2025-06-06 20:42:12] 2025-06-06 18:41:55,563 | INFO     | chi2: 5.228663713935605
[2025-06-06 20:42:12] 2025-06-06 18:41:55,563 | INFO     | current chi2=5.228663713935605 (change=-0.19804515460150554 %)
[2025-06-06 20:42:12] 2025-06-06 18:41:55,563 | INFO     | right removable region: 184
[2025-06-06 20:42:12] 2025-06-06 18:41:55,564 | INFO     | sum of square deviations: 1963274020.0
[2025-06-06 20:42:12] 2025-06-06 18:41:55,565 | INFO     | sum of deviations: -20462452928.000004
[2025-06-06 20:42:12] 2025-06-06 18:41:55,565 | INFO     | mean x: 1749229635.0
[2025-06-06 20:42:12] 2025-06-06 18:41:55,565 | INFO     | mean y: 2518112.551351351
[2025-06-06 20:42:12] 2025-06-06 18:41:55,565 | INFO     | -- intersect: 18234068421.789448
[2025-06-06 20:42:12] 2025-06-06 18:41:55,565 | INFO     | intersect: 18234068421.789448
[2025-06-06 20:42:12] 2025-06-06 18:41:55,565 | INFO     | chi2: 0.8240172170576118
[2025-06-06 20:42:12] 2025-06-06 18:41:55,566 | INFO     | current chi2=0.8240172170576118 (change=84.20917487907036 %)
[2025-06-06 20:42:12] 2025-06-06 18:41:55,566 | INFO     | sum of square deviations: 1808350185.0
[2025-06-06 20:42:12] 2025-06-06 18:41:55,567 | INFO     | sum of deviations: -39061108714.5
[2025-06-06 20:42:12] 2025-06-06 18:41:55,567 | INFO     | mean x: 1749229787.5
[2025-06-06 20:42:12] 2025-06-06 18:41:55,567 | INFO     | mean y: 2536218.4944444443
[2025-06-06 20:42:12] 2025-06-06 18:41:55,567 | INFO     | -- intersect: 37786619999.91051
[2025-06-06 20:42:12] 2025-06-06 18:41:55,567 | INFO     | intersect: 37786619999.91051
[2025-06-06 20:42:12] 2025-06-06 18:41:55,568 | INFO     | chi2: 0.1936852211759644
[2025-06-06 20:42:12] 2025-06-06 18:41:55,568 | INFO     | current chi2=0.1936852211759644 (change=76.49500311806922 %)
[2025-06-06 20:42:12] 2025-06-06 18:41:55,568 | INFO     | sum of square deviations: 1661798600.0
[2025-06-06 20:42:12] 2025-06-06 18:41:55,569 | INFO     | sum of deviations: -36068304541.00001
[2025-06-06 20:42:12] 2025-06-06 18:41:55,569 | INFO     | mean x: 1749229940.0
[2025-06-06 20:42:12] 2025-06-06 18:41:55,569 | INFO     | mean y: 2533063.645714286
[2025-06-06 20:42:12] 2025-06-06 18:41:55,569 | INFO     | -- intersect: 37968480434.25679
[2025-06-06 20:42:12] 2025-06-06 18:41:55,569 | INFO     | intersect: 37968480434.25679
[2025-06-06 20:42:12] 2025-06-06 18:41:55,570 | INFO     | chi2: 0.18389110493048527
[2025-06-06 20:42:12] 2025-06-06 18:41:55,570 | INFO     | current chi2=0.18389110493048527 (change=5.05671841455632 %)
[2025-06-06 20:42:12] 2025-06-06 18:41:55,570 | INFO     | left removable region: 30
[2025-06-06 20:42:12] 2025-06-06 18:41:55,570 | INFO     | sum of square deviations: 1132458442.5
[2025-06-06 20:42:12] 2025-06-06 18:41:55,571 | INFO     | sum of deviations: -17902265848.0
[2025-06-06 20:42:12] 2025-06-06 18:41:55,571 | INFO     | mean x: 1749230214.5
[2025-06-06 20:42:12] 2025-06-06 18:41:55,571 | INFO     | mean y: 2513001.1428571427
[2025-06-06 20:42:12] 2025-06-06 18:41:55,572 | INFO     | -- intersect: 27654904606.96822
[2025-06-06 20:42:12] 2025-06-06 18:41:55,572 | INFO     | intersect: 27654904606.96822
[2025-06-06 20:42:12] 2025-06-06 18:41:55,572 | INFO     | chi2: 0.14052780032796205
[2025-06-06 20:42:12] 2025-06-06 18:41:55,572 | INFO     | -- intersect: 27654904606.96822
[2025-06-06 20:42:12] 2025-06-06 18:41:55,572 | INFO     | current memory leak: -15.81 B/s (using 154 data points, chi2=0.14)
[2025-06-06 20:42:12] 2025-06-06 18:41:55,574 | INFO     | ..............................
[2025-06-06 20:42:12] 2025-06-06 18:41:55,574 | INFO     | . Timing measurements:
[2025-06-06 20:42:12] 2025-06-06 18:41:55,574 | INFO     | . get job = 0 s
[2025-06-06 20:42:12] 2025-06-06 18:41:55,574 | INFO     | . initial setup = 9 s
[2025-06-06 20:42:12] 2025-06-06 18:41:55,574 | INFO     | . payload setup = 123 s
[2025-06-06 20:42:12] 2025-06-06 18:41:55,574 | INFO     | . stage-in = 0 s
[2025-06-06 20:42:12] 2025-06-06 18:41:55,574 | INFO     | . payload execution = 11671 s
[2025-06-06 20:42:12] 2025-06-06 18:41:55,574 | INFO     | . stage-out = 2 s
[2025-06-06 20:42:12] 2025-06-06 18:41:55,574 | INFO     | . log creation = 0 s
[2025-06-06 20:42:12] 2025-06-06 18:41:55,574 | INFO     | ..............................
[2025-06-06 20:42:12] 2025-06-06 18:41:56,134 | INFO     | 
[2025-06-06 20:42:12] 2025-06-06 18:41:56,134 | INFO     | job summary report
[2025-06-06 20:42:12] 2025-06-06 18:41:56,134 | INFO     | --------------------------------------------------
[2025-06-06 20:42:12] 2025-06-06 18:41:56,134 | INFO     | PanDA job id: 6677862071
[2025-06-06 20:42:12] 2025-06-06 18:41:56,134 | INFO     | task id: 45006595
[2025-06-06 20:42:12] 2025-06-06 18:41:56,134 | INFO     | errors: (none)
[2025-06-06 20:42:12] 2025-06-06 18:41:56,134 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 20:42:12] 2025-06-06 18:41:56,135 | INFO     | pilot state: finished 
[2025-06-06 20:42:12] 2025-06-06 18:41:56,135 | INFO     | transexitcode: 0
[2025-06-06 20:42:12] 2025-06-06 18:41:56,135 | INFO     | exeerrorcode: 0
[2025-06-06 20:42:12] 2025-06-06 18:41:56,135 | INFO     | exeerrordiag: 
[2025-06-06 20:42:12] 2025-06-06 18:41:56,135 | INFO     | exitcode: 0
[2025-06-06 20:42:12] 2025-06-06 18:41:56,135 | INFO     | exitmsg: OK
[2025-06-06 20:42:12] 2025-06-06 18:41:56,135 | INFO     | cpuconsumptiontime: 42145 s
[2025-06-06 20:42:12] 2025-06-06 18:41:56,135 | INFO     | nevents: 400
[2025-06-06 20:42:12] 2025-06-06 18:41:56,135 | INFO     | neventsw: 0
[2025-06-06 20:42:12] 2025-06-06 18:41:56,135 | INFO     | pid: 8312
[2025-06-06 20:42:12] 2025-06-06 18:41:56,135 | INFO     | pgrp: 8312
[2025-06-06 20:42:12] 2025-06-06 18:41:56,135 | INFO     | corecount: 8
[2025-06-06 20:42:12] 2025-06-06 18:41:56,136 | INFO     | event service: False
[2025-06-06 20:42:12] 2025-06-06 18:41:56,136 | INFO     | sizes: {0: 2396514, 1: 2397200, 2: 2397399, 13: 2397399, 23: 2397455, 34: 2397483, 45: 2397639, 55: 2397667, 66: 2397695, 77: 2397723, 83: 2397985, 88: 2398321, 11
[2025-06-06 20:42:12] 2025-06-06 18:41:56,136 | INFO     | --------------------------------------------------
[2025-06-06 20:42:12] 2025-06-06 18:41:56,136 | INFO     | 
[2025-06-06 20:42:12] 2025-06-06 18:41:56,136 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2025-06-06 20:42:12] 2025-06-06 18:41:56,184 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 20:42:12] 2025-06-06 18:41:56,184 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 20:42:12] 2025-06-06 18:41:56,185 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 20:42:12] 2025-06-06 18:41:56,185 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 20:42:12] 2025-06-06 18:41:56,185 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 20:42:12] 2025-06-06 18:41:56,185 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 20:42:12] 2025-06-06 18:41:56,185 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 20:42:12] 2025-06-06 18:41:56,185 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 20:42:12] 2025-06-06 18:41:56,185 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 20:42:12] 2025-06-06 18:41:56,185 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 20:42:12] 2025-06-06 18:41:56,185 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 20:42:12] 2025-06-06 18:41:56,185 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 20:42:12] 2025-06-06 18:41:56,185 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 20:42:12] 2025-06-06 18:41:56,185 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 20:42:12] 2025-06-06 18:41:56,186 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 20:42:12] 2025-06-06 18:41:56,186 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 20:42:12] 2025-06-06 18:41:56,186 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 20:42:12] 2025-06-06 18:41:56,186 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 20:42:12] 2025-06-06 18:41:56,186 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 20:42:12] 2025-06-06 18:41:56,186 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 20:42:12] 2025-06-06 18:41:56,186 | INFO     | job 6677862071 has completed (purged errors)
[2025-06-06 20:42:12] 2025-06-06 18:41:56,186 | INFO     | overall cleanup function is called
[2025-06-06 20:42:12] 2025-06-06 18:41:57,195 | INFO     | --- collectZombieJob: --- 10, [8312]
[2025-06-06 20:42:12] 2025-06-06 18:41:57,195 | INFO     | zombie collector waiting for pid 8312
[2025-06-06 20:42:12] 2025-06-06 18:41:57,195 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 20:42:12] 2025-06-06 18:41:57,195 | INFO     | collected zombie processes
[2025-06-06 20:42:12] 2025-06-06 18:41:57,195 | INFO     | will attempt to kill all subprocesses of pid=8312
[2025-06-06 20:42:12] 2025-06-06 18:41:57,288 | INFO     | process IDs to be killed: [8312] (in reverse order)
[2025-06-06 20:42:12] 2025-06-06 18:41:57,365 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 20:42:12] 2025-06-06 18:41:57,366 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 20:42:12] 2025-06-06 18:41:57,369 | INFO     | did not find any defunct processes belonging to 8312
[2025-06-06 20:42:12] 2025-06-06 18:41:57,372 | INFO     | did not find any defunct processes belonging to 8312
[2025-06-06 20:42:12] 2025-06-06 18:41:57,372 | INFO     | ready for new job
[2025-06-06 20:42:12] 2025-06-06 18:41:57,372 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 20:42:12] 2025-06-06 18:41:57,374 | INFO     | **************************************
[2025-06-06 20:42:12] 2025-06-06 18:41:57,374 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 20:42:12] 2025-06-06 18:41:57,375 | INFO     | **************************************
[2025-06-06 20:42:12] 2025-06-06 18:41:57,375 | INFO     | 
[2025-06-06 20:42:12] 2025-06-06 18:41:57,375 | INFO     | pilot is running in a VM
[2025-06-06 20:42:12] 2025-06-06 18:41:57,375 | INFO     | architecture information:
[2025-06-06 20:42:12] 2025-06-06 18:41:57,377 | INFO     | executing command: cat /etc/os-release
[2025-06-06 20:42:12] 2025-06-06 18:41:57,408 | INFO     | cat /etc/os-release:
[2025-06-06 20:42:12] NAME="CentOS Linux"
[2025-06-06 20:42:12] VERSION="7 (Core)"
[2025-06-06 20:42:12] ID="centos"
[2025-06-06 20:42:12] ID_LIKE="rhel fedora"
[2025-06-06 20:42:12] VERSION_ID="7"
[2025-06-06 20:42:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 20:42:12] ANSI_COLOR="0;31"
[2025-06-06 20:42:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 20:42:12] HOME_URL="https://www.centos.org/"
[2025-06-06 20:42:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 20:42:12] 
[2025-06-06 20:42:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 20:42:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 20:42:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 20:42:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 20:42:12] 
[2025-06-06 20:42:12] 2025-06-06 18:41:57,408 | INFO     | **************************************
[2025-06-06 20:42:12] 2025-06-06 18:41:57,912 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2025-06-06 20:42:12] 2025-06-06 18:41:58,064 | INFO     | sufficient remaining disk space (497468571648 B)
[2025-06-06 20:42:12] 2025-06-06 18:41:58,065 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 20:42:12] 2025-06-06 18:41:58,065 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 20:42:12] 2025-06-06 18:41:58,065 | INFO     | update_server=False
[2025-06-06 20:42:12] 2025-06-06 18:41:58,065 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 20:42:12] 2025-06-06 18:41:58,240 | INFO     | all payload control threads have been joined
[2025-06-06 20:42:12] 2025-06-06 18:41:58,276 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-06 20:42:12] 2025-06-06 18:41:58,276 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-06 20:42:12] 2025-06-06 18:41:58,276 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 20:42:12] 2025-06-06 18:41:58,276 | INFO     | will abort loop
[2025-06-06 20:42:12] 2025-06-06 18:41:58,361 | INFO     | all data control threads have been joined
[2025-06-06 20:42:12] 2025-06-06 18:41:58,593 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 20:42:12] 2025-06-06 18:41:58,659 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 20:42:12] 2025-06-06 18:41:58,659 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 20:42:12] 2025-06-06 18:41:58,659 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 20:42:12] 2025-06-06 18:41:59,070 | INFO     | all job control threads have been joined
[2025-06-06 20:42:12] 2025-06-06 18:41:59,071 | INFO     | [job] retrieve thread has finished
[2025-06-06 20:42:12] 2025-06-06 18:41:59,199 | INFO     | [data] copytool_in thread has finished
[2025-06-06 20:42:12] 2025-06-06 18:41:59,246 | INFO     | [payload] control thread has finished
[2025-06-06 20:42:12] 2025-06-06 18:41:59,282 | INFO     | [job] job monitor thread has finished
[2025-06-06 20:42:12] 2025-06-06 18:41:59,367 | INFO     | [data] control thread has finished
[2025-06-06 20:42:12] 2025-06-06 18:41:59,790 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 20:42:12] 2025-06-06 18:41:59,905 | INFO     | [payload] failed_post thread has finished
[2025-06-06 20:42:12] 2025-06-06 18:42:00,076 | INFO     | [job] control thread has finished
[2025-06-06 20:42:12] 2025-06-06 18:42:00,142 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 20:42:12] 2025-06-06 18:42:00,255 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 20:42:12] 2025-06-06 18:42:00,354 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 20:42:12] 2025-06-06 18:42:00,540 | INFO     | [payload] validate_post thread has finished
[2025-06-06 20:42:12] 2025-06-06 18:42:00,565 | INFO     | [job] validate thread has finished
[2025-06-06 20:42:12] 2025-06-06 18:42:00,595 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 20:42:12] 2025-06-06 18:42:00,600 | INFO     | [data] copytool_out thread has finished
[2025-06-06 20:42:12] 2025-06-06 18:42:00,703 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 20:42:12] 2025-06-06 18:42:01,709 | INFO     | [job] queue monitor thread has finished
[2025-06-06 20:42:12] 2025-06-06 18:42:04,604 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 20:42:12] 2025-06-06 18:42:06,517 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140273830102848)>', '<ExcThread(monitor, started 140273095014144)>']
[2025-06-06 20:42:12] 2025-06-06 18:42:06,707 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 20:42:12] 2025-06-06 18:42:06,707 | INFO     | [monitor] control thread has ended
[2025-06-06 20:42:12] 2025-06-06 18:42:11,543 | INFO     | all workflow threads have been joined
[2025-06-06 20:42:12] 2025-06-06 18:42:11,543 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 20:42:12] 2025-06-06 18:42:11,543 | INFO     | traces error code: 0
[2025-06-06 20:42:12] 2025-06-06 18:42:11,543 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 20:42:12] 2025-06-06 18:42:11,741 [wrapper] ==== pilot stdout END ====
[2025-06-06 20:42:12] 2025-06-06 18:42:11,744 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 20:42:12] 2025-06-06 18:42:11,751 [wrapper] pilotpid: 1701
[2025-06-06 20:42:12] 2025-06-06 18:42:11,754 [wrapper] Pilot exit status: 0
[2025-06-06 20:42:12] 2025-06-06 18:42:11,889 [wrapper] pandaids: 6677862071
[2025-06-06 20:42:12] 2025-06-06 18:42:11,935 [wrapper] cleanup supervisor_pilot 11362 1702
[2025-06-06 20:42:12] 2025-06-06 18:42:11,939 [wrapper] Test setup, not cleaning
[2025-06-06 20:42:12] 2025-06-06 18:42:11,942 [wrapper] apfmon messages muted
[2025-06-06 20:42:12] 2025-06-06 18:42:11,945 [wrapper] ==== wrapper stdout END ====
[2025-06-06 20:42:12] 2025-06-06 18:42:11,954 [wrapper] ==== wrapper stderr END ====
[2025-06-06 20:42:12]  *** Error codes and diagnostics ***
[2025-06-06 20:42:12]     "exeErrorCode": 0,
[2025-06-06 20:42:12]     "exeErrorDiag": "",
[2025-06-06 20:42:12]     "pilotErrorCode": 0,
[2025-06-06 20:42:12]     "pilotErrorDiag": "",
[2025-06-06 20:42:12]  *** Listing of results directory ***
[2025-06-06 20:42:12] total 390240
[2025-06-06 20:42:12] -rw-r--r--. 1 boinc boinc    495897 Jun  3 18:58 pilot3.tar.gz
[2025-06-06 20:42:12] -rw-r--r--. 1 boinc boinc      5111 Jun  3 19:16 queuedata.json
[2025-06-06 20:42:12] -rwx------. 1 boinc boinc     37140 Jun  3 19:17 runpilot2-wrapper.sh
[2025-06-06 20:42:12] -rw-r--r--. 1 boinc boinc       100 Jun  6 17:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 20:42:12] -rwxr-xr-x. 1 boinc boinc      7986 Jun  6 17:19 run_atlas
[2025-06-06 20:42:12] -rw-r--r--. 1 boinc boinc       105 Jun  6 17:19 job.xml
[2025-06-06 20:42:12] -rw-r--r--. 1 boinc boinc      6393 Jun  6 17:19 init_data.xml
[2025-06-06 20:42:12] -rw-r--r--. 2 boinc boinc 216272498 Jun  6 17:19 EVNT.45006593._001611.pool.root.1
[2025-06-06 20:42:12] -rw-r--r--. 2 boinc boinc     15093 Jun  6 17:19 start_atlas.sh
[2025-06-06 20:42:12] drwxrwx--x. 2 boinc boinc        68 Jun  6 17:19 shared
[2025-06-06 20:42:12] -rw-r--r--. 2 boinc boinc    508880 Jun  6 17:19 input.tar.gz
[2025-06-06 20:42:12] -rw-r--r--. 1 boinc boinc         0 Jun  6 17:19 boinc_lockfile
[2025-06-06 20:42:12] -rw-r--r--. 1 boinc boinc      2525 Jun  6 17:19 pandaJob.out
[2025-06-06 20:42:12] -rw-------. 1 boinc boinc    985740 Jun  6 17:21 agis_schedconf.cvmfs.json
[2025-06-06 20:42:12] drwx------. 4 boinc boinc      4096 Jun  6 17:22 pilot3
[2025-06-06 20:42:12] -rw-r--r--. 1 boinc boinc       531 Jun  6 20:40 boinc_task_state.xml
[2025-06-06 20:42:12] -rw-------. 1 boinc boinc 176689367 Jun  6 20:41 HITS.45006595._040207.pool.root.1
[2025-06-06 20:42:12] -rw-------. 1 boinc boinc        95 Jun  6 20:41 pilot_heartbeat.json
[2025-06-06 20:42:12] -rw-------. 1 boinc boinc      1019 Jun  6 20:41 memory_monitor_summary.json
[2025-06-06 20:42:12] -rw-------. 1 boinc boinc   1598969 Jun  6 20:41 agis_ddmendpoints.agis.ALL.json
[2025-06-06 20:42:12] -rw-------. 1 boinc boinc    370765 Jun  6 20:41 log.45006595._040207.job.log.tgz.1
[2025-06-06 20:42:12] -rw-------. 1 boinc boinc      7698 Jun  6 20:41 heartbeat.json
[2025-06-06 20:42:12] -rw-r--r--. 1 boinc boinc      8192 Jun  6 20:42 boinc_mmap_file
[2025-06-06 20:42:12] -rw-r--r--. 1 boinc boinc        28 Jun  6 20:42 wrapper_checkpoint.txt
[2025-06-06 20:42:12] -rw-------. 1 boinc boinc      4603 Jun  6 20:42 pilotlog.txt
[2025-06-06 20:42:12] -rw-------. 1 boinc boinc   1039806 Jun  6 20:42 log.45006595._040207.job.log.1
[2025-06-06 20:42:12] -rw-------. 1 boinc boinc       357 Jun  6 20:42 output.list
[2025-06-06 20:42:12] -rw-r--r--. 1 boinc boinc       620 Jun  6 20:42 runtime_log
[2025-06-06 20:42:12] -rw-------. 1 boinc boinc   1433600 Jun  6 20:42 result.tar.gz
[2025-06-06 20:42:12] -rw-r--r--. 1 boinc boinc      8673 Jun  6 20:42 runtime_log.err
[2025-06-06 20:42:12] -rw-------. 1 boinc boinc       656 Jun  6 20:42 o3WKDmTRkg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmtIlKDmnZJ3Km.diag
[2025-06-06 20:42:12] -rw-r--r--. 1 boinc boinc     20491 Jun  6 20:42 stderr.txt
[2025-06-06 20:42:12] HITS file was successfully produced:
[2025-06-06 20:42:12] -rw-------. 1 boinc boinc 176689367 Jun  6 20:41 shared/HITS.pool.root.1
[2025-06-06 20:42:12]  *** Contents of shared directory: ***
[2025-06-06 20:42:12] total 385672
[2025-06-06 20:42:12] -rw-r--r--. 2 boinc boinc 216272498 Jun  6 17:19 ATLAS.root_0
[2025-06-06 20:42:12] -rw-r--r--. 2 boinc boinc     15093 Jun  6 17:19 start_atlas.sh
[2025-06-06 20:42:12] -rw-r--r--. 2 boinc boinc    508880 Jun  6 17:19 input.tar.gz
[2025-06-06 20:42:12] -rw-------. 1 boinc boinc 176689367 Jun  6 20:41 HITS.pool.root.1
[2025-06-06 20:42:12] -rw-------. 1 boinc boinc   1433600 Jun  6 20:42 result.tar.gz
20:42:13 (29886): run_atlas exited; CPU time 42287.304352
20:42:13 (29886): called boinc_finish(0)

</stderr_txt>
]]>

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