Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:53:34 (2439405): wrapper (7.7.26015): starting
10:53:34 (2439405): wrapper: running run_atlas (--nthreads 8)
[2025-06-06 10:53:34] Arguments: --nthreads 8
[2025-06-06 10:53:34] Threads: 8
[2025-06-06 10:53:34] Checking for CVMFS
[2025-06-06 10:53:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 10:53:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 10:53:34] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 10:53:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 10:53:35] 2.12.6.0 2000804 26279 520972 146865 1 355 28490693 32935937 18979 16776704 0 142339065 99.700 108859462 24846 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-06 10:53:35] CVMFS is ok
[2025-06-06 10:53:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 10:53:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 10:53:35] Further information can be found at the LHC@home message board.
[2025-06-06 10:53:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 10:53:35] Checking for apptainer binary...
[2025-06-06 10:53:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 10:53:35] Running /usr/bin/apptainer --version
[2025-06-06 10:53:35] apptainer version 1.4.1-1.el9
[2025-06-06 10:53:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 10:53:35] c6-12-27-3.aglt2.org
[2025-06-06 10:53:35] apptainer works
[2025-06-06 10:53:35] Set ATHENA_PROC_NUMBER=8
[2025-06-06 10:53:35] Set ATHENA_CORE_NUMBER=8
[2025-06-06 10:53:35] Starting ATLAS job with PandaID=6677786571
[2025-06-06 10:53:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 12:02:39]  *** The last 200 lines of the pilot log: ***
[2025-06-06 12:02:39]  filetype=log
[2025-06-06 12:02:39]  guid=b3e238dd-e33c-4a50-ae29-74c6e9b4a3bc
[2025-06-06 12:02:39]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-06 12:02:39]  is_altstaged=None
[2025-06-06 12:02:39]  is_tar=False
[2025-06-06 12:02:39]  lfn=log.45006595._039909.job.log.tgz.1
[2025-06-06 12:02:39]  mtime=0
[2025-06-06 12:02:39]  protocol_id=None
[2025-06-06 12:02:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 12:02:39]  replicas=None
[2025-06-06 12:02:39]  scope=mc23_13p6TeV
[2025-06-06 12:02:39]  status=None
[2025-06-06 12:02:39]  status_code=0
[2025-06-06 12:02:39]  storage_token=
[2025-06-06 12:02:39]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6677786571/log.45006595._039909.job.log.tgz.1
[2025-06-06 12:02:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a7/e9/log.45006595._039909.job.log.tgz.1
[2025-06-06 12:02:39]  workdir=None
[2025-06-06 12:02:39] ]
[2025-06-06 12:02:39] 2025-06-06 16:02:16,923 | INFO     | transferring file log.45006595._039909.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6677786571/log.45006595._039909.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-06 12:02:39] 2025-06-06 16:02:16,924 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6677786571/log.45006595._039909.job.log.tgz.1 /tmp/boinchome/slots/1/log.45006595._039909.job
[2025-06-06 12:02:39] 2025-06-06 16:02:16,943 | INFO     | adding to output.list: log.45006595._039909.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a7/e9/log.45006595._039909.job.log.tg
[2025-06-06 12:02:39] 2025-06-06 16:02:16,945 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 12:02:39] 2025-06-06 16:02:16,945 | INFO     | summary of transferred files:
[2025-06-06 12:02:39] 2025-06-06 16:02:16,945 | INFO     |  -- lfn=log.45006595._039909.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 12:02:39] 2025-06-06 16:02:16,945 | INFO     | stage-out finished correctly
[2025-06-06 12:02:39] 2025-06-06 16:02:18,433 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 12:02:39] 2025-06-06 16:02:19,641 | WARNING  | process 2450896 can no longer be monitored (due to stat problems) - aborting
[2025-06-06 12:02:39] 2025-06-06 16:02:19,642 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6677786571/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 12:02:39] 2025-06-06 16:02:20,001 | INFO     | number of running child processes to parent process 2450896: 1
[2025-06-06 12:02:39] 2025-06-06 16:02:20,001 | INFO     | maximum number of monitored processes: 6
[2025-06-06 12:02:39] 2025-06-06 16:02:21,040 | INFO     | job 6677786571 has state=finished
[2025-06-06 12:02:39] 2025-06-06 16:02:21,040 | INFO     | preparing for final server update for job 6677786571 in state='finished'
[2025-06-06 12:02:39] 2025-06-06 16:02:21,041 | INFO     | this job has now completed (state=finished)
[2025-06-06 12:02:39] 2025-06-06 16:02:21,041 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 12:02:39] 2025-06-06 16:02:21,041 | INFO     | log transfer has been attempted: DONE
[2025-06-06 12:02:39] 2025-06-06 16:02:21,041 | INFO     | job 6677786571 has finished - writing final server update
[2025-06-06 12:02:39] 2025-06-06 16:02:21,042 | INFO     | total number of processed events: 400 (read)
[2025-06-06 12:02:39] 2025-06-06 16:02:21,061 | INFO     | executing command: lscpu
[2025-06-06 12:02:39] 2025-06-06 16:02:21,157 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 12:02:39] 2025-06-06 16:02:22,504 | INFO     | monitor loop #304: job 0:6677786571 is in state 'finished'
[2025-06-06 12:02:39] 2025-06-06 16:02:22,504 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 12:02:39] 2025-06-06 16:02:24,483 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-06 12:02:39] 2025-06-06 16:02:24,483 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6677786571/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 12:02:39] 2025-06-06 16:02:24,484 | INFO     | extracted standard info from prmon json
[2025-06-06 12:02:39] 2025-06-06 16:02:24,484 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 12:02:39] 2025-06-06 16:02:24,484 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 12:02:39] 2025-06-06 16:02:24,484 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 12:02:39] 2025-06-06 16:02:24,484 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 12:02:39] 2025-06-06 16:02:24,485 | INFO     | fitting pss+swap vs Time
[2025-06-06 12:02:39] 2025-06-06 16:02:24,485 | INFO     | sum of square deviations: 66959395.0
[2025-06-06 12:02:39] 2025-06-06 16:02:24,485 | INFO     | sum of deviations: -6194502786.0
[2025-06-06 12:02:39] 2025-06-06 16:02:24,486 | INFO     | mean x: 1749223754.5
[2025-06-06 12:02:39] 2025-06-06 16:02:24,486 | INFO     | mean y: 2298861.6333333333
[2025-06-06 12:02:39] 2025-06-06 16:02:24,486 | INFO     | -- intersect: 161825317432.62894
[2025-06-06 12:02:39] 2025-06-06 16:02:24,486 | INFO     | intersect: 161825317432.62894
[2025-06-06 12:02:39] 2025-06-06 16:02:24,486 | INFO     | chi2: 0.14744275409848234
[2025-06-06 12:02:39] 2025-06-06 16:02:24,486 | INFO     | -- intersect: 161825317432.62894
[2025-06-06 12:02:39] 2025-06-06 16:02:24,486 | INFO     | current memory leak: -92.51 B/s (using 60 data points, chi2=0.15)
[2025-06-06 12:02:39] 2025-06-06 16:02:24,486 | INFO     | ..............................
[2025-06-06 12:02:39] 2025-06-06 16:02:24,486 | INFO     | . Timing measurements:
[2025-06-06 12:02:39] 2025-06-06 16:02:24,486 | INFO     | . get job = 0 s
[2025-06-06 12:02:39] 2025-06-06 16:02:24,486 | INFO     | . initial setup = 2 s
[2025-06-06 12:02:39] 2025-06-06 16:02:24,486 | INFO     | . payload setup = 6 s
[2025-06-06 12:02:39] 2025-06-06 16:02:24,486 | INFO     | . stage-in = 0 s
[2025-06-06 12:02:39] 2025-06-06 16:02:24,486 | INFO     | . payload execution = 4086 s
[2025-06-06 12:02:39] 2025-06-06 16:02:24,487 | INFO     | . stage-out = 0 s
[2025-06-06 12:02:39] 2025-06-06 16:02:24,487 | INFO     | . log creation = 0 s
[2025-06-06 12:02:39] 2025-06-06 16:02:24,487 | INFO     | ..............................
[2025-06-06 12:02:39] 2025-06-06 16:02:24,866 | INFO     | 
[2025-06-06 12:02:39] 2025-06-06 16:02:24,866 | INFO     | job summary report
[2025-06-06 12:02:39] 2025-06-06 16:02:24,866 | INFO     | --------------------------------------------------
[2025-06-06 12:02:39] 2025-06-06 16:02:24,866 | INFO     | PanDA job id: 6677786571
[2025-06-06 12:02:39] 2025-06-06 16:02:24,866 | INFO     | task id: 45006595
[2025-06-06 12:02:39] 2025-06-06 16:02:24,866 | INFO     | errors: (none)
[2025-06-06 12:02:39] 2025-06-06 16:02:24,866 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 12:02:39] 2025-06-06 16:02:24,867 | INFO     | pilot state: finished 
[2025-06-06 12:02:39] 2025-06-06 16:02:24,867 | INFO     | transexitcode: 0
[2025-06-06 12:02:39] 2025-06-06 16:02:24,867 | INFO     | exeerrorcode: 0
[2025-06-06 12:02:39] 2025-06-06 16:02:24,867 | INFO     | exeerrordiag: 
[2025-06-06 12:02:39] 2025-06-06 16:02:24,867 | INFO     | exitcode: 0
[2025-06-06 12:02:39] 2025-06-06 16:02:24,867 | INFO     | exitmsg: OK
[2025-06-06 12:02:39] 2025-06-06 16:02:24,867 | INFO     | cpuconsumptiontime: 30258 s
[2025-06-06 12:02:39] 2025-06-06 16:02:24,867 | INFO     | nevents: 400
[2025-06-06 12:02:39] 2025-06-06 16:02:24,867 | INFO     | neventsw: 0
[2025-06-06 12:02:39] 2025-06-06 16:02:24,867 | INFO     | pid: 2450896
[2025-06-06 12:02:39] 2025-06-06 16:02:24,867 | INFO     | pgrp: 2450896
[2025-06-06 12:02:39] 2025-06-06 16:02:24,867 | INFO     | corecount: 8
[2025-06-06 12:02:39] 2025-06-06 16:02:24,867 | INFO     | event service: False
[2025-06-06 12:02:39] 2025-06-06 16:02:24,867 | INFO     | sizes: {0: 2397342, 4: 2397548, 11: 2397576, 4096: 2423401, 4097: 2432342, 4099: 2432398, 4105: 2432696}
[2025-06-06 12:02:39] 2025-06-06 16:02:24,867 | INFO     | --------------------------------------------------
[2025-06-06 12:02:39] 2025-06-06 16:02:24,867 | INFO     | 
[2025-06-06 12:02:39] 2025-06-06 16:02:24,867 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-06 12:02:39] 2025-06-06 16:02:24,882 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 12:02:39] 2025-06-06 16:02:24,883 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 12:02:39] 2025-06-06 16:02:24,883 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 12:02:39] 2025-06-06 16:02:24,883 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 12:02:39] 2025-06-06 16:02:24,883 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 12:02:39] 2025-06-06 16:02:24,883 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 12:02:39] 2025-06-06 16:02:24,883 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 12:02:39] 2025-06-06 16:02:24,883 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 12:02:39] 2025-06-06 16:02:24,883 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 12:02:39] 2025-06-06 16:02:24,883 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 12:02:39] 2025-06-06 16:02:24,883 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 12:02:39] 2025-06-06 16:02:24,883 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 12:02:39] 2025-06-06 16:02:24,883 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 12:02:39] 2025-06-06 16:02:24,883 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 12:02:39] 2025-06-06 16:02:24,883 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 12:02:39] 2025-06-06 16:02:24,883 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 12:02:39] 2025-06-06 16:02:24,883 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 12:02:39] 2025-06-06 16:02:24,883 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 12:02:39] 2025-06-06 16:02:24,883 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 12:02:39] 2025-06-06 16:02:24,883 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 12:02:39] 2025-06-06 16:02:24,884 | INFO     | job 6677786571 has completed (purged errors)
[2025-06-06 12:02:39] 2025-06-06 16:02:24,884 | INFO     | overall cleanup function is called
[2025-06-06 12:02:39] 2025-06-06 16:02:25,891 | INFO     | --- collectZombieJob: --- 10, [2450896]
[2025-06-06 12:02:39] 2025-06-06 16:02:25,891 | INFO     | zombie collector waiting for pid 2450896
[2025-06-06 12:02:39] 2025-06-06 16:02:25,891 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 12:02:39] 2025-06-06 16:02:25,891 | INFO     | collected zombie processes
[2025-06-06 12:02:39] 2025-06-06 16:02:25,892 | INFO     | will attempt to kill all subprocesses of pid=2450896
[2025-06-06 12:02:39] 2025-06-06 16:02:26,244 | INFO     | process IDs to be killed: [2450896] (in reverse order)
[2025-06-06 12:02:39] 2025-06-06 16:02:26,353 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 12:02:39] 2025-06-06 16:02:26,353 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 12:02:39] 2025-06-06 16:02:26,367 | INFO     | did not find any defunct processes belonging to 2450896
[2025-06-06 12:02:39] 2025-06-06 16:02:26,381 | INFO     | did not find any defunct processes belonging to 2450896
[2025-06-06 12:02:39] 2025-06-06 16:02:26,381 | INFO     | ready for new job
[2025-06-06 12:02:39] 2025-06-06 16:02:26,381 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 12:02:39] 2025-06-06 16:02:26,383 | INFO     | **************************************
[2025-06-06 12:02:39] 2025-06-06 16:02:26,383 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 12:02:39] 2025-06-06 16:02:26,383 | INFO     | **************************************
[2025-06-06 12:02:39] 2025-06-06 16:02:26,383 | INFO     | 
[2025-06-06 12:02:39] 2025-06-06 16:02:26,400 | INFO     | architecture information:
[2025-06-06 12:02:39] 2025-06-06 16:02:26,401 | INFO     | executing command: cat /etc/os-release
[2025-06-06 12:02:39] 2025-06-06 16:02:26,418 | INFO     | cat /etc/os-release:
[2025-06-06 12:02:39] NAME="CentOS Linux"
[2025-06-06 12:02:39] VERSION="7 (Core)"
[2025-06-06 12:02:39] ID="centos"
[2025-06-06 12:02:39] ID_LIKE="rhel fedora"
[2025-06-06 12:02:39] VERSION_ID="7"
[2025-06-06 12:02:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 12:02:39] ANSI_COLOR="0;31"
[2025-06-06 12:02:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 12:02:39] HOME_URL="https://www.centos.org/"
[2025-06-06 12:02:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 12:02:39] 
[2025-06-06 12:02:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 12:02:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 12:02:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 12:02:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 12:02:39] 
[2025-06-06 12:02:39] 2025-06-06 16:02:26,418 | INFO     | **************************************
[2025-06-06 12:02:39] 2025-06-06 16:02:26,921 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-06 12:02:39] 2025-06-06 16:02:26,937 | INFO     | sufficient remaining disk space (96639909888 B)
[2025-06-06 12:02:39] 2025-06-06 16:02:26,938 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 12:02:39] 2025-06-06 16:02:26,938 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 12:02:39] 2025-06-06 16:02:26,938 | INFO     | update_server=False
[2025-06-06 12:02:39] 2025-06-06 16:02:26,938 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 12:02:39] 2025-06-06 16:02:26,938 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 12:02:39] 2025-06-06 16:02:26,939 | INFO     | aborting loop
[2025-06-06 12:02:39] 2025-06-06 16:02:27,096 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 12:02:39] 2025-06-06 16:02:27,097 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 12:02:39] 2025-06-06 16:02:27,097 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 12:02:39] 2025-06-06 16:02:27,557 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 12:02:39] 2025-06-06 16:02:27,761 | INFO     | all job control threads have been joined
[2025-06-06 12:02:39] 2025-06-06 16:02:27,890 | INFO     | all data control threads have been joined
[2025-06-06 12:02:39] 2025-06-06 16:02:27,944 | INFO     | [job] retrieve thread has finished
[2025-06-06 12:02:39] 2025-06-06 16:02:27,944 | INFO     | [job] job monitor thread has finished
[2025-06-06 12:02:39] 2025-06-06 16:02:28,073 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 12:02:39] 2025-06-06 16:02:28,073 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 12:02:39] 2025-06-06 16:02:28,257 | INFO     | all payload control threads have been joined
[2025-06-06 12:02:39] 2025-06-06 16:02:28,358 | INFO     | [payload] validate_post thread has finished
[2025-06-06 12:02:39] 2025-06-06 16:02:28,501 | INFO     | [payload] failed_post thread has finished
[2025-06-06 12:02:39] 2025-06-06 16:02:28,571 | INFO     | [data] copytool_in thread has finished
[2025-06-06 12:02:39] 2025-06-06 16:02:28,766 | INFO     | [job] control thread has finished
[2025-06-06 12:02:39] 2025-06-06 16:02:28,891 | INFO     | [job] validate thread has finished
[2025-06-06 12:02:39] 2025-06-06 16:02:28,896 | INFO     | [data] control thread has finished
[2025-06-06 12:02:39] 2025-06-06 16:02:29,044 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 12:02:39] 2025-06-06 16:02:29,074 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 12:02:39] 2025-06-06 16:02:29,234 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 12:02:39] 2025-06-06 16:02:29,263 | INFO     | [payload] control thread has finished
[2025-06-06 12:02:39] 2025-06-06 16:02:29,551 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 12:02:39] 2025-06-06 16:02:29,563 | INFO     | [data] copytool_out thread has finished
[2025-06-06 12:02:39] 2025-06-06 16:02:30,556 | INFO     | [job] queue monitor thread has finished
[2025-06-06 12:02:39] 2025-06-06 16:02:33,050 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 12:02:39] 2025-06-06 16:02:33,702 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139966233196352)>', '<ExcThread(monitor, started 139965593806592)>']
[2025-06-06 12:02:39] 2025-06-06 16:02:34,132 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 12:02:39] 2025-06-06 16:02:34,132 | INFO     | [monitor] control thread has ended
[2025-06-06 12:02:39] 2025-06-06 16:02:38,727 | INFO     | all workflow threads have been joined
[2025-06-06 12:02:39] 2025-06-06 16:02:38,727 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 12:02:39] 2025-06-06 16:02:38,728 | INFO     | traces error code: 0
[2025-06-06 12:02:39] 2025-06-06 16:02:38,728 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 12:02:39] 2025-06-06 16:02:38,887 [wrapper] ==== pilot stdout END ====
[2025-06-06 12:02:39] 2025-06-06 16:02:38,890 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 12:02:39] 2025-06-06 16:02:38,892 [wrapper] pilotpid: 2443079
[2025-06-06 12:02:39] 2025-06-06 16:02:38,895 [wrapper] Pilot exit status: 0
[2025-06-06 12:02:39] 2025-06-06 16:02:38,905 [wrapper] pandaids: 6677786571
[2025-06-06 12:02:39] 2025-06-06 16:02:38,979 [wrapper] cleanup supervisor_pilot 2552309 2443080
[2025-06-06 12:02:39] 2025-06-06 16:02:38,983 [wrapper] Test setup, not cleaning
[2025-06-06 12:02:39] 2025-06-06 16:02:38,985 [wrapper] apfmon messages muted
[2025-06-06 12:02:39] 2025-06-06 16:02:38,988 [wrapper] ==== wrapper stdout END ====
[2025-06-06 12:02:39] 2025-06-06 16:02:38,991 [wrapper] ==== wrapper stderr END ====
[2025-06-06 12:02:39]  *** Error codes and diagnostics ***
[2025-06-06 12:02:39]     "exeErrorCode": 0,
[2025-06-06 12:02:39]     "exeErrorDiag": "",
[2025-06-06 12:02:39]     "pilotErrorCode": 0,
[2025-06-06 12:02:39]     "pilotErrorDiag": "",
[2025-06-06 12:02:39]  *** Listing of results directory ***
[2025-06-06 12:02:39] total 391788
[2025-06-06 12:02:39] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 12:58 pilot3.tar.gz
[2025-06-06 12:02:39] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 13:06 queuedata.json
[2025-06-06 12:02:39] -rwx------. 1 boincer umatlas     37140 Jun  3 13:07 runpilot2-wrapper.sh
[2025-06-06 12:02:39] -rw-r--r--. 1 boincer umatlas       100 Jun  6 10:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 12:02:39] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  6 10:53 run_atlas
[2025-06-06 12:02:39] -rw-r--r--. 1 boincer umatlas       105 Jun  6 10:53 job.xml
[2025-06-06 12:02:39] -rw-r--r--. 2 boincer umatlas 216280822 Jun  6 10:53 EVNT.45006593._001600.pool.root.1
[2025-06-06 12:02:39] -rw-r--r--. 2 boincer umatlas     15093 Jun  6 10:53 start_atlas.sh
[2025-06-06 12:02:39] drwxrwx--x. 2 boincer umatlas      4096 Jun  6 10:53 shared
[2025-06-06 12:02:39] -rw-r--r--. 2 boincer umatlas    508882 Jun  6 10:53 input.tar.gz
[2025-06-06 12:02:39] -rw-r--r--. 1 boincer umatlas         0 Jun  6 10:53 boinc_lockfile
[2025-06-06 12:02:39] -rw-r--r--. 1 boincer umatlas      2525 Jun  6 10:53 pandaJob.out
[2025-06-06 12:02:39] -rw-------. 1 boincer umatlas    985728 Jun  6 10:53 agis_schedconf.cvmfs.json
[2025-06-06 12:02:39] -rw-------. 1 boincer umatlas   1598969 Jun  6 10:53 agis_ddmendpoints.agis.ALL.json
[2025-06-06 12:02:39] drwx------. 4 boincer umatlas      4096 Jun  6 10:53 pilot3
[2025-06-06 12:02:39] -rw-r--r--. 1 boincer umatlas      6859 Jun  6 11:56 init_data.xml
[2025-06-06 12:02:39] -rw-------. 1 boincer umatlas 179626840 Jun  6 12:01 HITS.45006595._039909.pool.root.1
[2025-06-06 12:02:39] -rw-r--r--. 1 boincer umatlas       529 Jun  6 12:01 boinc_task_state.xml
[2025-06-06 12:02:39] -rw-------. 1 boincer umatlas        95 Jun  6 12:02 pilot_heartbeat.json
[2025-06-06 12:02:39] -rw-------. 1 boincer umatlas      1052 Jun  6 12:02 memory_monitor_summary.json
[2025-06-06 12:02:39] -rw-r--r--. 1 boincer umatlas      8192 Jun  6 12:02 boinc_mmap_file
[2025-06-06 12:02:39] -rw-r--r--. 1 boincer umatlas        27 Jun  6 12:02 wrapper_checkpoint.txt
[2025-06-06 12:02:39] -rw-------. 1 boincer umatlas    314281 Jun  6 12:02 log.45006595._039909.job.log.tgz.1
[2025-06-06 12:02:39] -rw-------. 1 boincer umatlas      7727 Jun  6 12:02 heartbeat.json
[2025-06-06 12:02:39] -rw-------. 1 boincer umatlas      4353 Jun  6 12:02 pilotlog.txt
[2025-06-06 12:02:39] -rw-------. 1 boincer umatlas    410208 Jun  6 12:02 log.45006595._039909.job.log.1
[2025-06-06 12:02:39] -rw-------. 1 boincer umatlas       357 Jun  6 12:02 output.list
[2025-06-06 12:02:39] -rw-r--r--. 1 boincer umatlas       620 Jun  6 12:02 runtime_log
[2025-06-06 12:02:39] -rw-------. 1 boincer umatlas    747520 Jun  6 12:02 result.tar.gz
[2025-06-06 12:02:39] -rw-r--r--. 1 boincer umatlas      8669 Jun  6 12:02 runtime_log.err
[2025-06-06 12:02:39] -rw-------. 1 boincer umatlas       653 Jun  6 12:02 jZnLDmDIkg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlFlKDmmxP9Hm.diag
[2025-06-06 12:02:39] -rw-r--r--. 1 boincer umatlas     21235 Jun  6 12:02 stderr.txt
[2025-06-06 12:02:39] HITS file was successfully produced:
[2025-06-06 12:02:39] -rw-------. 1 boincer umatlas 179626840 Jun  6 12:01 shared/HITS.pool.root.1
[2025-06-06 12:02:39]  *** Contents of shared directory: ***
[2025-06-06 12:02:39] total 387884
[2025-06-06 12:02:39] -rw-r--r--. 2 boincer umatlas 216280822 Jun  6 10:53 ATLAS.root_0
[2025-06-06 12:02:39] -rw-r--r--. 2 boincer umatlas     15093 Jun  6 10:53 start_atlas.sh
[2025-06-06 12:02:39] -rw-r--r--. 2 boincer umatlas    508882 Jun  6 10:53 input.tar.gz
[2025-06-06 12:02:39] -rw-------. 1 boincer umatlas 179626840 Jun  6 12:01 HITS.pool.root.1
[2025-06-06 12:02:39] -rw-------. 1 boincer umatlas    747520 Jun  6 12:02 result.tar.gz
12:02:40 (2439405): run_atlas exited; CPU time 30417.959591
12:02:40 (2439405): called boinc_finish(0)

</stderr_txt>
]]>

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