Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:52:10 (144868): wrapper (7.7.26015): starting
10:52:10 (144868): wrapper: running run_atlas (--nthreads 9)
[2025-06-06 10:52:10] Arguments: --nthreads 9
[2025-06-06 10:52:10] Threads: 9
[2025-06-06 10:52:10] Checking for CVMFS
[2025-06-06 10:52:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 10:52:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 10:52:11] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 10:52:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 10:52:11] 2.11.2.0 5563 31807 258800 146865 0 280 16432231 18432001 8938 130560 0 76543486 99.459 76795293 29927 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-06 10:52:11] CVMFS is ok
[2025-06-06 10:52:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 10:52:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 10:52:11] Further information can be found at the LHC@home message board.
[2025-06-06 10:52:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 10:52:11] Checking for apptainer binary...
[2025-06-06 10:52:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 10:52:11] Running /usr/bin/apptainer --version
[2025-06-06 10:52:11] apptainer version 1.3.2-1.el7
[2025-06-06 10:52:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 10:52:12] c-210-35-2.aglt2.org
[2025-06-06 10:52:12] apptainer works
[2025-06-06 10:52:12] Set ATHENA_PROC_NUMBER=9
[2025-06-06 10:52:12] Set ATHENA_CORE_NUMBER=9
[2025-06-06 10:52:12] Starting ATLAS job with PandaID=6677574071
[2025-06-06 10:52:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 12:14:02]  *** The last 200 lines of the pilot log: ***
[2025-06-06 12:14:02]  mtime=0
[2025-06-06 12:14:02]  protocol_id=None
[2025-06-06 12:14:02]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 12:14:02]  replicas=None
[2025-06-06 12:14:02]  scope=mc23_13p6TeV
[2025-06-06 12:14:02]  status=None
[2025-06-06 12:14:02]  status_code=0
[2025-06-06 12:14:02]  storage_token=
[2025-06-06 12:14:02]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6677574071/log.45006595._028441.job.log.tgz.1
[2025-06-06 12:14:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/23/ef/log.45006595._028441.job.log.tgz.1
[2025-06-06 12:14:02]  workdir=None
[2025-06-06 12:14:02] ]
[2025-06-06 12:14:02] 2025-06-06 16:13:34,561 | INFO     | transferring file log.45006595._028441.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6677574071/log.45006595._028441.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-06 12:14:02] 2025-06-06 16:13:34,561 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6677574071/log.45006595._028441.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._028441.job
[2025-06-06 12:14:02] 2025-06-06 16:13:34,584 | INFO     | adding to output.list: log.45006595._028441.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/23/ef/log.45006595._028441.job.log.tg
[2025-06-06 12:14:02] 2025-06-06 16:13:34,585 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 12:14:02] 2025-06-06 16:13:34,585 | INFO     | summary of transferred files:
[2025-06-06 12:14:02] 2025-06-06 16:13:34,585 | INFO     |  -- lfn=log.45006595._028441.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 12:14:02] 2025-06-06 16:13:34,585 | INFO     | stage-out finished correctly
[2025-06-06 12:14:02] 2025-06-06 16:13:35,923 | INFO     | PID=148602 has CPU usage=9.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-06 12:14:02] 2025-06-06 16:13:35,923 | INFO     | .. there are 8 such processes running
[2025-06-06 12:14:02] 2025-06-06 16:13:36,324 | INFO     | monitor loop #363: job 0:6677574071 is in state 'finished'
[2025-06-06 12:14:02] 2025-06-06 16:13:36,324 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 12:14:02] 2025-06-06 16:13:37,151 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 12:14:02] 2025-06-06 16:13:37,223 | INFO     | job 6677574071 has state=finished
[2025-06-06 12:14:02] 2025-06-06 16:13:37,223 | INFO     | preparing for final server update for job 6677574071 in state='finished'
[2025-06-06 12:14:02] 2025-06-06 16:13:37,281 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-06 12:14:02] 2025-06-06 16:13:37,282 | INFO     | this job has now completed (state=finished)
[2025-06-06 12:14:02] 2025-06-06 16:13:37,282 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 12:14:02] 2025-06-06 16:13:37,282 | INFO     | log transfer has been attempted: DONE
[2025-06-06 12:14:02] 2025-06-06 16:13:37,282 | INFO     | job 6677574071 has finished - writing final server update
[2025-06-06 12:14:02] 2025-06-06 16:13:37,282 | INFO     | total number of processed events: 400 (read)
[2025-06-06 12:14:02] 2025-06-06 16:13:37,287 | INFO     | executing command: lscpu
[2025-06-06 12:14:02] 2025-06-06 16:13:37,345 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 12:14:02] 2025-06-06 16:13:38,828 | INFO     | monitor loop #364: job 0:6677574071 is in state 'finished'
[2025-06-06 12:14:02] 2025-06-06 16:13:38,828 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 12:14:02] 2025-06-06 16:13:41,331 | INFO     | monitor loop #365: job 0:6677574071 is in state 'finished'
[2025-06-06 12:14:02] 2025-06-06 16:13:41,331 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 12:14:02] 2025-06-06 16:13:42,378 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-06 12:14:02] 2025-06-06 16:13:42,378 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677574071/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 12:14:02] 2025-06-06 16:13:42,379 | INFO     | extracted standard info from prmon json
[2025-06-06 12:14:02] 2025-06-06 16:13:42,379 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 12:14:02] 2025-06-06 16:13:42,379 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 12:14:02] 2025-06-06 16:13:42,380 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 12:14:02] 2025-06-06 16:13:42,380 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 12:14:02] 2025-06-06 16:13:42,382 | INFO     | fitting pss+swap vs Time
[2025-06-06 12:14:02] 2025-06-06 16:13:42,383 | INFO     | sum of square deviations: 120605052.0
[2025-06-06 12:14:02] 2025-06-06 16:13:42,383 | INFO     | sum of deviations: -6637206870.000002
[2025-06-06 12:14:02] 2025-06-06 16:13:42,383 | INFO     | mean x: 1749224073.0
[2025-06-06 12:14:02] 2025-06-06 16:13:42,383 | INFO     | mean y: 2588157.9178082193
[2025-06-06 12:14:02] 2025-06-06 16:13:42,383 | INFO     | -- intersect: 96266897504.46976
[2025-06-06 12:14:02] 2025-06-06 16:13:42,384 | INFO     | intersect: 96266897504.46976
[2025-06-06 12:14:02] 2025-06-06 16:13:42,384 | INFO     | chi2: 0.0709992394791446
[2025-06-06 12:14:02] 2025-06-06 16:13:42,384 | INFO     | -- intersect: 96266897504.46976
[2025-06-06 12:14:02] 2025-06-06 16:13:42,384 | INFO     | current memory leak: -55.03 B/s (using 73 data points, chi2=0.07)
[2025-06-06 12:14:02] 2025-06-06 16:13:42,385 | INFO     | ..............................
[2025-06-06 12:14:02] 2025-06-06 16:13:42,385 | INFO     | . Timing measurements:
[2025-06-06 12:14:02] 2025-06-06 16:13:42,385 | INFO     | . get job = 0 s
[2025-06-06 12:14:02] 2025-06-06 16:13:42,385 | INFO     | . initial setup = 2 s
[2025-06-06 12:14:02] 2025-06-06 16:13:42,385 | INFO     | . payload setup = 7 s
[2025-06-06 12:14:02] 2025-06-06 16:13:42,385 | INFO     | . stage-in = 0 s
[2025-06-06 12:14:02] 2025-06-06 16:13:42,385 | INFO     | . payload execution = 4843 s
[2025-06-06 12:14:02] 2025-06-06 16:13:42,385 | INFO     | . stage-out = 0 s
[2025-06-06 12:14:02] 2025-06-06 16:13:42,385 | INFO     | . log creation = 0 s
[2025-06-06 12:14:02] 2025-06-06 16:13:42,385 | INFO     | ..............................
[2025-06-06 12:14:02] 2025-06-06 16:13:42,492 | INFO     | 
[2025-06-06 12:14:02] 2025-06-06 16:13:42,492 | INFO     | job summary report
[2025-06-06 12:14:02] 2025-06-06 16:13:42,493 | INFO     | --------------------------------------------------
[2025-06-06 12:14:02] 2025-06-06 16:13:42,493 | INFO     | PanDA job id: 6677574071
[2025-06-06 12:14:02] 2025-06-06 16:13:42,493 | INFO     | task id: 45006595
[2025-06-06 12:14:02] 2025-06-06 16:13:42,493 | INFO     | errors: (none)
[2025-06-06 12:14:02] 2025-06-06 16:13:42,493 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 12:14:02] 2025-06-06 16:13:42,493 | INFO     | pilot state: finished 
[2025-06-06 12:14:02] 2025-06-06 16:13:42,493 | INFO     | transexitcode: 0
[2025-06-06 12:14:02] 2025-06-06 16:13:42,493 | INFO     | exeerrorcode: 0
[2025-06-06 12:14:02] 2025-06-06 16:13:42,493 | INFO     | exeerrordiag: 
[2025-06-06 12:14:02] 2025-06-06 16:13:42,493 | INFO     | exitcode: 0
[2025-06-06 12:14:02] 2025-06-06 16:13:42,493 | INFO     | exitmsg: OK
[2025-06-06 12:14:02] 2025-06-06 16:13:42,493 | INFO     | cpuconsumptiontime: 35045 s
[2025-06-06 12:14:02] 2025-06-06 16:13:42,494 | INFO     | nevents: 400
[2025-06-06 12:14:02] 2025-06-06 16:13:42,494 | INFO     | neventsw: 0
[2025-06-06 12:14:02] 2025-06-06 16:13:42,494 | INFO     | pid: 155101
[2025-06-06 12:14:02] 2025-06-06 16:13:42,494 | INFO     | pgrp: 155101
[2025-06-06 12:14:02] 2025-06-06 16:13:42,494 | INFO     | corecount: 9
[2025-06-06 12:14:02] 2025-06-06 16:13:42,494 | INFO     | event service: False
[2025-06-06 12:14:02] 2025-06-06 16:13:42,494 | INFO     | sizes: {0: 2397171, 1: 2397370, 5: 2397576, 11: 2397632, 4854: 2423742, 4856: 2432683, 4858: 2432867, 4864: 2433037}
[2025-06-06 12:14:02] 2025-06-06 16:13:42,494 | INFO     | --------------------------------------------------
[2025-06-06 12:14:02] 2025-06-06 16:13:42,494 | INFO     | 
[2025-06-06 12:14:02] 2025-06-06 16:13:42,494 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-06 12:14:02] 2025-06-06 16:13:42,520 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 12:14:02] 2025-06-06 16:13:42,521 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 12:14:02] 2025-06-06 16:13:42,521 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 12:14:02] 2025-06-06 16:13:42,521 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 12:14:02] 2025-06-06 16:13:42,521 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 12:14:02] 2025-06-06 16:13:42,521 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 12:14:02] 2025-06-06 16:13:42,521 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 12:14:02] 2025-06-06 16:13:42,521 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 12:14:02] 2025-06-06 16:13:42,521 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 12:14:02] 2025-06-06 16:13:42,521 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 12:14:02] 2025-06-06 16:13:42,521 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 12:14:02] 2025-06-06 16:13:42,521 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 12:14:02] 2025-06-06 16:13:42,521 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 12:14:02] 2025-06-06 16:13:42,522 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 12:14:02] 2025-06-06 16:13:42,522 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 12:14:02] 2025-06-06 16:13:42,522 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 12:14:02] 2025-06-06 16:13:42,522 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 12:14:02] 2025-06-06 16:13:42,522 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 12:14:02] 2025-06-06 16:13:42,522 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 12:14:02] 2025-06-06 16:13:42,522 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 12:14:02] 2025-06-06 16:13:42,522 | INFO     | job 6677574071 has completed (purged errors)
[2025-06-06 12:14:02] 2025-06-06 16:13:42,522 | INFO     | overall cleanup function is called
[2025-06-06 12:14:02] 2025-06-06 16:13:42,931 | INFO     | 4881s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-06 12:14:02] 2025-06-06 16:13:43,529 | INFO     | --- collectZombieJob: --- 10, [155101]
[2025-06-06 12:14:02] 2025-06-06 16:13:43,529 | INFO     | zombie collector waiting for pid 155101
[2025-06-06 12:14:02] 2025-06-06 16:13:43,529 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 12:14:02] 2025-06-06 16:13:43,529 | INFO     | collected zombie processes
[2025-06-06 12:14:02] 2025-06-06 16:13:43,529 | INFO     | will attempt to kill all subprocesses of pid=155101
[2025-06-06 12:14:02] 2025-06-06 16:13:43,744 | INFO     | process IDs to be killed: [155101] (in reverse order)
[2025-06-06 12:14:02] 2025-06-06 16:13:43,836 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 12:14:02] 2025-06-06 16:13:43,837 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 12:14:02] 2025-06-06 16:13:43,845 | INFO     | did not find any defunct processes belonging to 155101
[2025-06-06 12:14:02] 2025-06-06 16:13:43,853 | INFO     | did not find any defunct processes belonging to 155101
[2025-06-06 12:14:02] 2025-06-06 16:13:43,853 | INFO     | ready for new job
[2025-06-06 12:14:02] 2025-06-06 16:13:43,853 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 12:14:02] 2025-06-06 16:13:43,855 | INFO     | **************************************
[2025-06-06 12:14:02] 2025-06-06 16:13:43,855 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 12:14:02] 2025-06-06 16:13:43,855 | INFO     | **************************************
[2025-06-06 12:14:02] 2025-06-06 16:13:43,855 | INFO     | 
[2025-06-06 12:14:02] 2025-06-06 16:13:43,860 | INFO     | architecture information:
[2025-06-06 12:14:02] 2025-06-06 16:13:43,860 | INFO     | executing command: cat /etc/os-release
[2025-06-06 12:14:02] 2025-06-06 16:13:43,881 | INFO     | cat /etc/os-release:
[2025-06-06 12:14:02] NAME="CentOS Linux"
[2025-06-06 12:14:02] VERSION="7 (Core)"
[2025-06-06 12:14:02] ID="centos"
[2025-06-06 12:14:02] ID_LIKE="rhel fedora"
[2025-06-06 12:14:02] VERSION_ID="7"
[2025-06-06 12:14:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 12:14:02] ANSI_COLOR="0;31"
[2025-06-06 12:14:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 12:14:02] HOME_URL="https://www.centos.org/"
[2025-06-06 12:14:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 12:14:02] 
[2025-06-06 12:14:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 12:14:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 12:14:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 12:14:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 12:14:02] 
[2025-06-06 12:14:02] 2025-06-06 16:13:43,881 | INFO     | **************************************
[2025-06-06 12:14:02] 2025-06-06 16:13:44,384 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-06 12:14:02] 2025-06-06 16:13:44,412 | INFO     | sufficient remaining disk space (57790169088 B)
[2025-06-06 12:14:02] 2025-06-06 16:13:44,412 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 12:14:02] 2025-06-06 16:13:44,412 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 12:14:02] 2025-06-06 16:13:44,412 | INFO     | update_server=False
[2025-06-06 12:14:02] 2025-06-06 16:13:44,412 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 12:14:02] 2025-06-06 16:13:44,413 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 12:14:02] 2025-06-06 16:13:44,413 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 12:14:02] 2025-06-06 16:13:44,413 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 12:14:02] 2025-06-06 16:13:44,414 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 12:14:02] 2025-06-06 16:13:44,414 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 12:14:02] 2025-06-06 16:13:44,838 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 12:14:02] 2025-06-06 16:13:44,838 | INFO     | aborting loop
[2025-06-06 12:14:02] 2025-06-06 16:13:45,199 | INFO     | all data control threads have been joined
[2025-06-06 12:14:02] 2025-06-06 16:13:45,206 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 12:14:02] 2025-06-06 16:13:45,310 | INFO     | all payload control threads have been joined
[2025-06-06 12:14:02] 2025-06-06 16:13:45,417 | INFO     | [job] retrieve thread has finished
[2025-06-06 12:14:02] 2025-06-06 16:13:45,419 | INFO     | [job] queue monitor thread has finished
[2025-06-06 12:14:02] 2025-06-06 16:13:45,562 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 12:14:02] 2025-06-06 16:13:45,620 | INFO     | [payload] validate_post thread has finished
[2025-06-06 12:14:02] 2025-06-06 16:13:45,717 | INFO     | all job control threads have been joined
[2025-06-06 12:14:02] 2025-06-06 16:13:45,843 | INFO     | [job] job monitor thread has finished
[2025-06-06 12:14:02] 2025-06-06 16:13:45,850 | INFO     | [payload] failed_post thread has finished
[2025-06-06 12:14:02] 2025-06-06 16:13:46,138 | INFO     | [data] copytool_in thread has finished
[2025-06-06 12:14:02] 2025-06-06 16:13:46,204 | INFO     | [data] control thread has finished
[2025-06-06 12:14:02] 2025-06-06 16:13:46,312 | INFO     | [payload] control thread has finished
[2025-06-06 12:14:02] 2025-06-06 16:13:46,323 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 12:14:02] 2025-06-06 16:13:46,341 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 12:14:02] 2025-06-06 16:13:46,382 | INFO     | [job] validate thread has finished
[2025-06-06 12:14:02] 2025-06-06 16:13:46,723 | INFO     | [job] control thread has finished
[2025-06-06 12:14:02] 2025-06-06 16:13:47,209 | INFO     | [data] copytool_out thread has finished
[2025-06-06 12:14:02] 2025-06-06 16:13:47,732 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 12:14:02] 2025-06-06 16:13:51,739 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 12:14:02] 2025-06-06 16:13:54,859 | INFO     | job.realtimelogging is not enabled
[2025-06-06 12:14:02] 2025-06-06 16:13:55,864 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 12:14:02] 2025-06-06 16:13:57,548 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140318471542592)>', '<ExcThread(monitor, started 140318041167616)>']
[2025-06-06 12:14:02] 2025-06-06 16:13:58,476 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 12:14:02] 2025-06-06 16:13:58,476 | INFO     | [monitor] control thread has ended
[2025-06-06 12:14:02] 2025-06-06 16:14:02,573 | INFO     | all workflow threads have been joined
[2025-06-06 12:14:02] 2025-06-06 16:14:02,574 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 12:14:02] 2025-06-06 16:14:02,574 | INFO     | traces error code: 0
[2025-06-06 12:14:02] 2025-06-06 16:14:02,574 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 12:14:02] 2025-06-06 16:14:02,738 [wrapper] ==== pilot stdout END ====
[2025-06-06 12:14:02] 2025-06-06 16:14:02,743 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 12:14:02] 2025-06-06 16:14:02,747 [wrapper] pilotpid: 148602
[2025-06-06 12:14:02] 2025-06-06 16:14:02,751 [wrapper] Pilot exit status: 0
[2025-06-06 12:14:02] 2025-06-06 16:14:02,765 [wrapper] pandaids: 6677574071
[2025-06-06 12:14:02] 2025-06-06 16:14:02,825 [wrapper] cleanup supervisor_pilot 229783 148603
[2025-06-06 12:14:02] 2025-06-06 16:14:02,829 [wrapper] Test setup, not cleaning
[2025-06-06 12:14:02] 2025-06-06 16:14:02,832 [wrapper] apfmon messages muted
[2025-06-06 12:14:02] 2025-06-06 16:14:02,835 [wrapper] ==== wrapper stdout END ====
[2025-06-06 12:14:02] 2025-06-06 16:14:02,838 [wrapper] ==== wrapper stderr END ====
[2025-06-06 12:14:02]  *** Error codes and diagnostics ***
[2025-06-06 12:14:02]     "exeErrorCode": 0,
[2025-06-06 12:14:02]     "exeErrorDiag": "",
[2025-06-06 12:14:02]     "pilotErrorCode": 0,
[2025-06-06 12:14:02]     "pilotErrorDiag": "",
[2025-06-06 12:14:02]  *** Listing of results directory ***
[2025-06-06 12:14:02] total 386844
[2025-06-06 12:14:02] -rw-r--r-- 1 boincer umatlas    495897 Jun  3 05:56 pilot3.tar.gz
[2025-06-06 12:14:02] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 06:07 queuedata.json
[2025-06-06 12:14:02] -rwx------ 1 boincer umatlas     37140 Jun  3 06:09 runpilot2-wrapper.sh
[2025-06-06 12:14:02] -rw-r--r-- 1 boincer umatlas       100 Jun  6 10:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 12:14:02] -rwxr-xr-x 1 boincer umatlas      7986 Jun  6 10:52 run_atlas
[2025-06-06 12:14:02] -rw-r--r-- 1 boincer umatlas       105 Jun  6 10:52 job.xml
[2025-06-06 12:14:02] -rw-r--r-- 2 boincer umatlas 214333449 Jun  6 10:52 EVNT.45006593._001137.pool.root.1
[2025-06-06 12:14:02] -rw-r--r-- 2 boincer umatlas     15093 Jun  6 10:52 start_atlas.sh
[2025-06-06 12:14:02] drwxrwx--x 2 boincer umatlas      4096 Jun  6 10:52 shared
[2025-06-06 12:14:02] -rw-r--r-- 2 boincer umatlas    508882 Jun  6 10:52 input.tar.gz
[2025-06-06 12:14:02] -rw-r--r-- 1 boincer umatlas         0 Jun  6 10:52 boinc_lockfile
[2025-06-06 12:14:02] -rw-r--r-- 1 boincer umatlas      2525 Jun  6 10:52 pandaJob.out
[2025-06-06 12:14:02] -rw------- 1 boincer umatlas    985728 Jun  6 10:52 agis_schedconf.cvmfs.json
[2025-06-06 12:14:02] -rw------- 1 boincer umatlas   1598969 Jun  6 10:52 agis_ddmendpoints.agis.ALL.json
[2025-06-06 12:14:02] drwx------ 4 boincer umatlas      4096 Jun  6 10:52 pilot3
[2025-06-06 12:14:02] -rw-r--r-- 1 boincer umatlas      6266 Jun  6 12:10 init_data.xml
[2025-06-06 12:14:02] -rw------- 1 boincer umatlas 176346950 Jun  6 12:12 HITS.45006595._028441.pool.root.1
[2025-06-06 12:14:02] -rw-r--r-- 1 boincer umatlas       529 Jun  6 12:13 boinc_task_state.xml
[2025-06-06 12:14:02] -rw------- 1 boincer umatlas      1055 Jun  6 12:13 memory_monitor_summary.json
[2025-06-06 12:14:02] -rw------- 1 boincer umatlas    327526 Jun  6 12:13 log.45006595._028441.job.log.tgz.1
[2025-06-06 12:14:02] -rw------- 1 boincer umatlas        95 Jun  6 12:13 pilot_heartbeat.json
[2025-06-06 12:14:02] -rw------- 1 boincer umatlas      7752 Jun  6 12:13 heartbeat.json
[2025-06-06 12:14:02] -rw-r--r-- 1 boincer umatlas      8192 Jun  6 12:13 boinc_mmap_file
[2025-06-06 12:14:02] -rw-r--r-- 1 boincer umatlas        27 Jun  6 12:13 wrapper_checkpoint.txt
[2025-06-06 12:14:02] -rw------- 1 boincer umatlas      4548 Jun  6 12:14 pilotlog.txt
[2025-06-06 12:14:02] -rw------- 1 boincer umatlas    480153 Jun  6 12:14 log.45006595._028441.job.log.1
[2025-06-06 12:14:02] -rw------- 1 boincer umatlas       357 Jun  6 12:14 output.list
[2025-06-06 12:14:02] -rw-r--r-- 1 boincer umatlas       620 Jun  6 12:14 runtime_log
[2025-06-06 12:14:02] -rw------- 1 boincer umatlas    829440 Jun  6 12:14 result.tar.gz
[2025-06-06 12:14:02] -rw-r--r-- 1 boincer umatlas      8669 Jun  6 12:14 runtime_log.err
[2025-06-06 12:14:02] -rw------- 1 boincer umatlas       660 Jun  6 12:14 dZiMDmDldg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFPjKDm53D3sn.diag
[2025-06-06 12:14:02] -rw-r--r-- 1 boincer umatlas     21723 Jun  6 12:14 stderr.txt
[2025-06-06 12:14:02] HITS file was successfully produced:
[2025-06-06 12:14:02] -rw------- 1 boincer umatlas 176346950 Jun  6 12:12 shared/HITS.pool.root.1
[2025-06-06 12:14:02]  *** Contents of shared directory: ***
[2025-06-06 12:14:03] total 382860
[2025-06-06 12:14:03] -rw-r--r-- 2 boincer umatlas 214333449 Jun  6 10:52 ATLAS.root_0
[2025-06-06 12:14:03] -rw-r--r-- 2 boincer umatlas     15093 Jun  6 10:52 start_atlas.sh
[2025-06-06 12:14:03] -rw-r--r-- 2 boincer umatlas    508882 Jun  6 10:52 input.tar.gz
[2025-06-06 12:14:03] -rw------- 1 boincer umatlas 176346950 Jun  6 12:12 HITS.pool.root.1
[2025-06-06 12:14:03] -rw------- 1 boincer umatlas    829440 Jun  6 12:14 result.tar.gz
12:14:04 (144868): run_atlas exited; CPU time 35090.592601
12:14:04 (144868): called boinc_finish(0)

</stderr_txt>
]]>

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