Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:56:44 (3546317): wrapper (7.7.26015): starting
09:56:44 (3546317): wrapper: running run_atlas (--nthreads 10)
[2025-06-06 09:56:44] Arguments: --nthreads 10
[2025-06-06 09:56:44] Threads: 10
[2025-06-06 09:56:44] Checking for CVMFS
[2025-06-06 09:56:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 09:56:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 09:56:44] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 09:56:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 09:56:44] 2.12.6.0 5977 4272 270896 146860 1 554 26648367 32935937 17028 16776704 0 30305888 99.646 26656499 24025 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-06 09:56:44] CVMFS is ok
[2025-06-06 09:56:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 09:56:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 09:56:44] Further information can be found at the LHC@home message board.
[2025-06-06 09:56:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 09:56:44] Checking for apptainer binary...
[2025-06-06 09:56:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 09:56:44] Running /usr/bin/apptainer --version
[2025-06-06 09:56:44] apptainer version 1.4.1-1.el9
[2025-06-06 09:56:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 09:56:44] c-1-3.aglt2.org
[2025-06-06 09:56:44] apptainer works
[2025-06-06 09:56:44] Set ATHENA_PROC_NUMBER=10
[2025-06-06 09:56:44] Set ATHENA_CORE_NUMBER=10
[2025-06-06 09:56:44] Starting ATLAS job with PandaID=6682204507
[2025-06-06 09:56:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 11:28:36]  *** The last 200 lines of the pilot log: ***
[2025-06-06 11:28:36]  protocol_id=None
[2025-06-06 11:28:36]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 11:28:36]  replicas=None
[2025-06-06 11:28:36]  scope=mc23_13p6TeV
[2025-06-06 11:28:36]  status=None
[2025-06-06 11:28:36]  status_code=0
[2025-06-06 11:28:36]  storage_token=
[2025-06-06 11:28:36]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6682204507/log.44871837._102345.job.log.tgz.1
[2025-06-06 11:28:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c4/78/log.44871837._102345.job.log.tgz.1
[2025-06-06 11:28:36]  workdir=None
[2025-06-06 11:28:36] ]
[2025-06-06 11:28:36] 2025-06-06 15:27:52,309 | INFO     | transferring file log.44871837._102345.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6682204507/log.44871837._102345.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-06 11:28:36] 2025-06-06 15:27:52,309 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6682204507/log.44871837._102345.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._102345.job
[2025-06-06 11:28:36] 2025-06-06 15:27:52,331 | INFO     | adding to output.list: log.44871837._102345.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c4/78/log.44871837._102345.job.log.tg
[2025-06-06 11:28:36] 2025-06-06 15:27:52,332 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 11:28:36] 2025-06-06 15:27:52,332 | INFO     | summary of transferred files:
[2025-06-06 11:28:36] 2025-06-06 15:27:52,332 | INFO     |  -- lfn=log.44871837._102345.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 11:28:36] 2025-06-06 15:27:52,333 | INFO     | stage-out finished correctly
[2025-06-06 11:28:36] 2025-06-06 15:27:52,987 | INFO     | monitor loop #400: job 0:6682204507 is in state 'finished'
[2025-06-06 11:28:36] 2025-06-06 15:27:52,988 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 11:28:36] 2025-06-06 15:27:54,976 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 11:28:36] 2025-06-06 15:27:55,496 | INFO     | monitor loop #401: job 0:6682204507 is in state 'finished'
[2025-06-06 11:28:36] 2025-06-06 15:27:55,496 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 11:28:36] 2025-06-06 15:27:57,612 | INFO     | job 6682204507 has state=finished
[2025-06-06 11:28:36] 2025-06-06 15:27:57,612 | INFO     | preparing for final server update for job 6682204507 in state='finished'
[2025-06-06 11:28:36] 2025-06-06 15:27:57,677 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-06 11:28:36] 2025-06-06 15:27:57,678 | INFO     | this job has now completed (state=finished)
[2025-06-06 11:28:36] 2025-06-06 15:27:57,678 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 11:28:36] 2025-06-06 15:27:57,678 | INFO     | log transfer has been attempted: DONE
[2025-06-06 11:28:36] 2025-06-06 15:27:57,678 | INFO     | job 6682204507 has finished - writing final server update
[2025-06-06 11:28:36] 2025-06-06 15:27:57,679 | INFO     | total number of processed events: 400 (read)
[2025-06-06 11:28:36] 2025-06-06 15:27:57,679 | INFO     | executing command: lscpu
[2025-06-06 11:28:36] 2025-06-06 15:27:57,751 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 11:28:36] 2025-06-06 15:27:57,999 | INFO     | monitor loop #402: job 0:6682204507 is in state 'finished'
[2025-06-06 11:28:36] 2025-06-06 15:27:57,999 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 11:28:36] 2025-06-06 15:28:00,502 | INFO     | monitor loop #403: job 0:6682204507 is in state 'finished'
[2025-06-06 11:28:36] 2025-06-06 15:28:00,502 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 11:28:36] 2025-06-06 15:28:02,365 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-06 11:28:36] 2025-06-06 15:28:02,371 | INFO     | found 40 cores (20 cores per socket, 2 sockets) HT, CPU MHz: 2615.0030749999996
[2025-06-06 11:28:36] 2025-06-06 15:28:02,385 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6682204507/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 11:28:36] 2025-06-06 15:28:02,385 | INFO     | extracted standard info from prmon json
[2025-06-06 11:28:36] 2025-06-06 15:28:02,385 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 11:28:36] 2025-06-06 15:28:02,385 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 11:28:36] 2025-06-06 15:28:02,386 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 11:28:36] 2025-06-06 15:28:02,386 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 11:28:36] 2025-06-06 15:28:02,388 | INFO     | fitting pss+swap vs Time
[2025-06-06 11:28:36] 2025-06-06 15:28:02,388 | INFO     | sum of square deviations: 170944600.5
[2025-06-06 11:28:36] 2025-06-06 15:28:02,389 | INFO     | sum of deviations: 1160478701.0
[2025-06-06 11:28:36] 2025-06-06 15:28:02,389 | INFO     | mean x: 1749221022.5
[2025-06-06 11:28:36] 2025-06-06 15:28:02,389 | INFO     | mean y: 2302288.926829268
[2025-06-06 11:28:36] 2025-06-06 15:28:02,389 | INFO     | -- intersect: -11872502378.873672
[2025-06-06 11:28:36] 2025-06-06 15:28:02,389 | INFO     | intersect: -11872502378.873672
[2025-06-06 11:28:36] 2025-06-06 15:28:02,389 | INFO     | chi2: 0.08368297541118654
[2025-06-06 11:28:36] 2025-06-06 15:28:02,389 | INFO     | -- intersect: -11872502378.873672
[2025-06-06 11:28:36] 2025-06-06 15:28:02,390 | INFO     | current memory leak: 6.79 B/s (using 82 data points, chi2=0.08)
[2025-06-06 11:28:36] 2025-06-06 15:28:02,390 | INFO     | could have reported an average CPU frequency of 2635 MHz (7 samples)
[2025-06-06 11:28:36] 2025-06-06 15:28:02,390 | INFO     | ..............................
[2025-06-06 11:28:36] 2025-06-06 15:28:02,390 | INFO     | . Timing measurements:
[2025-06-06 11:28:36] 2025-06-06 15:28:02,390 | INFO     | . get job = 0 s
[2025-06-06 11:28:36] 2025-06-06 15:28:02,390 | INFO     | . initial setup = 2 s
[2025-06-06 11:28:36] 2025-06-06 15:28:02,390 | INFO     | . payload setup = 9 s
[2025-06-06 11:28:36] 2025-06-06 15:28:02,390 | INFO     | . stage-in = 0 s
[2025-06-06 11:28:36] 2025-06-06 15:28:02,390 | INFO     | . payload execution = 5424 s
[2025-06-06 11:28:36] 2025-06-06 15:28:02,391 | INFO     | . stage-out = 0 s
[2025-06-06 11:28:36] 2025-06-06 15:28:02,391 | INFO     | . log creation = 0 s
[2025-06-06 11:28:36] 2025-06-06 15:28:02,391 | INFO     | ..............................
[2025-06-06 11:28:36] 2025-06-06 15:28:02,858 | INFO     | 
[2025-06-06 11:28:36] 2025-06-06 15:28:02,858 | INFO     | job summary report
[2025-06-06 11:28:36] 2025-06-06 15:28:02,858 | INFO     | --------------------------------------------------
[2025-06-06 11:28:36] 2025-06-06 15:28:02,859 | INFO     | PanDA job id: 6682204507
[2025-06-06 11:28:36] 2025-06-06 15:28:02,859 | INFO     | task id: 44871837
[2025-06-06 11:28:36] 2025-06-06 15:28:02,859 | INFO     | errors: (none)
[2025-06-06 11:28:36] 2025-06-06 15:28:02,859 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 11:28:36] 2025-06-06 15:28:02,859 | INFO     | pilot state: finished 
[2025-06-06 11:28:36] 2025-06-06 15:28:02,859 | INFO     | transexitcode: 0
[2025-06-06 11:28:36] 2025-06-06 15:28:02,859 | INFO     | exeerrorcode: 0
[2025-06-06 11:28:36] 2025-06-06 15:28:02,859 | INFO     | exeerrordiag: 
[2025-06-06 11:28:36] 2025-06-06 15:28:02,859 | INFO     | exitcode: 0
[2025-06-06 11:28:36] 2025-06-06 15:28:02,859 | INFO     | exitmsg: OK
[2025-06-06 11:28:36] 2025-06-06 15:28:02,859 | INFO     | cpuconsumptiontime: 50056 s
[2025-06-06 11:28:36] 2025-06-06 15:28:02,859 | INFO     | nevents: 400
[2025-06-06 11:28:36] 2025-06-06 15:28:02,859 | INFO     | neventsw: 0
[2025-06-06 11:28:36] 2025-06-06 15:28:02,859 | INFO     | pid: 3556685
[2025-06-06 11:28:36] 2025-06-06 15:28:02,859 | INFO     | pgrp: 3556685
[2025-06-06 11:28:36] 2025-06-06 15:28:02,859 | INFO     | corecount: 10
[2025-06-06 11:28:36] 2025-06-06 15:28:02,860 | INFO     | event service: False
[2025-06-06 11:28:36] 2025-06-06 15:28:02,860 | INFO     | sizes: {0: 2397682, 5: 2397944, 11: 2398000, 5437: 2424448, 5439: 2433389, 5441: 2433445, 5449: 2433767}
[2025-06-06 11:28:36] 2025-06-06 15:28:02,860 | INFO     | --------------------------------------------------
[2025-06-06 11:28:36] 2025-06-06 15:28:02,860 | INFO     | 
[2025-06-06 11:28:36] 2025-06-06 15:28:02,860 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-06 11:28:36] 2025-06-06 15:28:02,883 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 11:28:36] 2025-06-06 15:28:02,884 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 11:28:36] 2025-06-06 15:28:02,884 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 11:28:36] 2025-06-06 15:28:02,884 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 11:28:36] 2025-06-06 15:28:02,884 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 11:28:36] 2025-06-06 15:28:02,884 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 11:28:36] 2025-06-06 15:28:02,884 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 11:28:36] 2025-06-06 15:28:02,884 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 11:28:36] 2025-06-06 15:28:02,884 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 11:28:36] 2025-06-06 15:28:02,884 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 11:28:36] 2025-06-06 15:28:02,884 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 11:28:36] 2025-06-06 15:28:02,885 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 11:28:36] 2025-06-06 15:28:02,885 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 11:28:36] 2025-06-06 15:28:02,885 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 11:28:36] 2025-06-06 15:28:02,885 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 11:28:36] 2025-06-06 15:28:02,885 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 11:28:36] 2025-06-06 15:28:02,885 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 11:28:36] 2025-06-06 15:28:02,885 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 11:28:36] 2025-06-06 15:28:02,885 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 11:28:36] 2025-06-06 15:28:02,885 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 11:28:36] 2025-06-06 15:28:02,885 | INFO     | job 6682204507 has completed (purged errors)
[2025-06-06 11:28:36] 2025-06-06 15:28:02,885 | INFO     | overall cleanup function is called
[2025-06-06 11:28:36] 2025-06-06 15:28:03,893 | INFO     | --- collectZombieJob: --- 10, [3556685]
[2025-06-06 11:28:36] 2025-06-06 15:28:03,893 | INFO     | zombie collector waiting for pid 3556685
[2025-06-06 11:28:36] 2025-06-06 15:28:03,893 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 11:28:36] 2025-06-06 15:28:03,893 | INFO     | collected zombie processes
[2025-06-06 11:28:36] 2025-06-06 15:28:03,894 | INFO     | will attempt to kill all subprocesses of pid=3556685
[2025-06-06 11:28:36] 2025-06-06 15:28:04,156 | INFO     | process IDs to be killed: [3556685] (in reverse order)
[2025-06-06 11:28:36] 2025-06-06 15:28:04,245 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 11:28:36] 2025-06-06 15:28:04,246 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 11:28:36] 2025-06-06 15:28:04,262 | INFO     | did not find any defunct processes belonging to 3556685
[2025-06-06 11:28:36] 2025-06-06 15:28:04,273 | INFO     | did not find any defunct processes belonging to 3556685
[2025-06-06 11:28:36] 2025-06-06 15:28:04,273 | INFO     | ready for new job
[2025-06-06 11:28:36] 2025-06-06 15:28:04,274 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 11:28:36] 2025-06-06 15:28:04,275 | INFO     | ***************************************
[2025-06-06 11:28:36] 2025-06-06 15:28:04,276 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-06 11:28:36] 2025-06-06 15:28:04,276 | INFO     | ***************************************
[2025-06-06 11:28:36] 2025-06-06 15:28:04,276 | INFO     | 
[2025-06-06 11:28:36] 2025-06-06 15:28:04,293 | INFO     | architecture information:
[2025-06-06 11:28:36] 2025-06-06 15:28:04,293 | INFO     | executing command: cat /etc/os-release
[2025-06-06 11:28:36] 2025-06-06 15:28:04,311 | INFO     | cat /etc/os-release:
[2025-06-06 11:28:36] NAME="CentOS Linux"
[2025-06-06 11:28:36] VERSION="7 (Core)"
[2025-06-06 11:28:36] ID="centos"
[2025-06-06 11:28:36] ID_LIKE="rhel fedora"
[2025-06-06 11:28:36] VERSION_ID="7"
[2025-06-06 11:28:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 11:28:36] ANSI_COLOR="0;31"
[2025-06-06 11:28:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 11:28:36] HOME_URL="https://www.centos.org/"
[2025-06-06 11:28:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 11:28:36] 
[2025-06-06 11:28:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 11:28:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 11:28:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 11:28:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 11:28:36] 
[2025-06-06 11:28:36] 2025-06-06 15:28:04,311 | INFO     | ***************************************
[2025-06-06 11:28:36] 2025-06-06 15:28:04,814 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-06 11:28:36] 2025-06-06 15:28:04,835 | INFO     | sufficient remaining disk space (76453773312 B)
[2025-06-06 11:28:36] 2025-06-06 15:28:04,836 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 11:28:36] 2025-06-06 15:28:04,836 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 11:28:36] 2025-06-06 15:28:04,836 | INFO     | update_server=False
[2025-06-06 11:28:36] 2025-06-06 15:28:04,836 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 11:28:36] 2025-06-06 15:28:04,837 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 11:28:36] 2025-06-06 15:28:04,837 | INFO     | aborting loop
[2025-06-06 11:28:36] 2025-06-06 15:28:05,342 | INFO     | all data control threads have been joined
[2025-06-06 11:28:36] 2025-06-06 15:28:05,348 | INFO     | all payload control threads have been joined
[2025-06-06 11:28:36] 2025-06-06 15:28:05,457 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 11:28:36] 2025-06-06 15:28:05,588 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 11:28:36] 2025-06-06 15:28:05,841 | INFO     | [job] retrieve thread has finished
[2025-06-06 11:28:36] 2025-06-06 15:28:05,842 | INFO     | [job] job monitor thread has finished
[2025-06-06 11:28:36] 2025-06-06 15:28:05,849 | INFO     | [payload] failed_post thread has finished
[2025-06-06 11:28:36] 2025-06-06 15:28:05,849 | INFO     | all job control threads have been joined
[2025-06-06 11:28:36] 2025-06-06 15:28:05,969 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 11:28:36] 2025-06-06 15:28:06,174 | INFO     | [data] copytool_in thread has finished
[2025-06-06 11:28:36] 2025-06-06 15:28:06,347 | INFO     | [data] control thread has finished
[2025-06-06 11:28:36] 2025-06-06 15:28:06,353 | INFO     | [payload] control thread has finished
[2025-06-06 11:28:36] 2025-06-06 15:28:06,421 | INFO     | [payload] validate_post thread has finished
[2025-06-06 11:28:36] 2025-06-06 15:28:06,461 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 11:28:36] 2025-06-06 15:28:06,851 | INFO     | [job] control thread has finished
[2025-06-06 11:28:36] 2025-06-06 15:28:06,991 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 11:28:36] 2025-06-06 15:28:07,040 | INFO     | [job] validate thread has finished
[2025-06-06 11:28:36] 2025-06-06 15:28:07,041 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 11:28:36] 2025-06-06 15:28:07,462 | INFO     | [data] copytool_out thread has finished
[2025-06-06 11:28:36] 2025-06-06 15:28:07,508 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 11:28:36] 2025-06-06 15:28:08,513 | INFO     | [job] queue monitor thread has finished
[2025-06-06 11:28:36] 2025-06-06 15:28:09,593 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 11:28:36] 2025-06-06 15:28:11,672 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140369499277120)>', '<ExcThread(monitor, started 140368792254208)>']
[2025-06-06 11:28:36] 2025-06-06 15:28:16,697 | INFO     | all workflow threads have been joined
[2025-06-06 11:28:36] 2025-06-06 15:28:16,697 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 11:28:36] 2025-06-06 15:28:16,698 | INFO     | traces error code: 0
[2025-06-06 11:28:36] 2025-06-06 15:28:16,698 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 11:28:36] 2025-06-06 15:28:36,442 | INFO     | PID=3550041 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-06 11:28:36] 2025-06-06 15:28:36,443 | INFO     | .. there are 24 such processes running
[2025-06-06 11:28:36] 2025-06-06 15:28:36,443 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 11:28:36] 2025-06-06 15:28:36,443 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 11:28:36] 2025-06-06 15:28:36,443 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 11:28:36] 2025-06-06 15:28:36,443 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 11:28:36] 2025-06-06 15:28:36,443 | INFO     | [monitor] control thread has ended
[2025-06-06 11:28:36] 2025-06-06 15:28:36,655 [wrapper] ==== pilot stdout END ====
[2025-06-06 11:28:36] 2025-06-06 15:28:36,657 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 11:28:36] 2025-06-06 15:28:36,660 [wrapper] pilotpid: 3550041
[2025-06-06 11:28:36] 2025-06-06 15:28:36,664 [wrapper] Pilot exit status: 0
[2025-06-06 11:28:36] 2025-06-06 15:28:36,675 [wrapper] pandaids: 6682204507
[2025-06-06 11:28:36] 2025-06-06 15:28:36,764 [wrapper] cleanup supervisor_pilot 3960604 3550042
[2025-06-06 11:28:36] 2025-06-06 15:28:36,768 [wrapper] Test setup, not cleaning
[2025-06-06 11:28:36] 2025-06-06 15:28:36,773 [wrapper] apfmon messages muted
[2025-06-06 11:28:36] 2025-06-06 15:28:36,777 [wrapper] ==== wrapper stdout END ====
[2025-06-06 11:28:36] 2025-06-06 15:28:36,782 [wrapper] ==== wrapper stderr END ====
[2025-06-06 11:28:36]  *** Error codes and diagnostics ***
[2025-06-06 11:28:36]     "exeErrorCode": 0,
[2025-06-06 11:28:36]     "exeErrorDiag": "",
[2025-06-06 11:28:36]     "pilotErrorCode": 0,
[2025-06-06 11:28:36]     "pilotErrorDiag": "",
[2025-06-06 11:28:36]  *** Listing of results directory ***
[2025-06-06 11:28:36] total 420940
[2025-06-06 11:28:36] -rw-r--r--. 1 boincer umatlas      5112 Jun  6 09:55 queuedata.json
[2025-06-06 11:28:36] -rw-r--r--. 1 boincer umatlas    529402 Jun  6 09:55 pilot3.tar.gz
[2025-06-06 11:28:36] -rwx------. 1 boincer umatlas     37140 Jun  6 09:56 runpilot2-wrapper.sh
[2025-06-06 11:28:36] -rw-r--r--. 1 boincer umatlas       100 Jun  6 09:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 11:28:36] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  6 09:56 run_atlas
[2025-06-06 11:28:36] -rw-r--r--. 1 boincer umatlas       105 Jun  6 09:56 job.xml
[2025-06-06 11:28:36] -rw-r--r--. 2 boincer umatlas 222870182 Jun  6 09:56 EVNT.44871834._002599.pool.root.1
[2025-06-06 11:28:36] -rw-r--r--. 2 boincer umatlas     15095 Jun  6 09:56 start_atlas.sh
[2025-06-06 11:28:36] drwxrwx--x. 2 boincer umatlas      4096 Jun  6 09:56 shared
[2025-06-06 11:28:36] -rw-r--r--. 2 boincer umatlas    541906 Jun  6 09:56 input.tar.gz
[2025-06-06 11:28:36] -rw-r--r--. 1 boincer umatlas         0 Jun  6 09:56 boinc_lockfile
[2025-06-06 11:28:36] -rw-r--r--. 1 boincer umatlas      2558 Jun  6 09:56 pandaJob.out
[2025-06-06 11:28:36] -rw-------. 1 boincer umatlas    985728 Jun  6 09:56 agis_schedconf.cvmfs.json
[2025-06-06 11:28:36] -rw-------. 1 boincer umatlas   1598969 Jun  6 09:56 agis_ddmendpoints.agis.ALL.json
[2025-06-06 11:28:36] drwx------. 4 boincer umatlas      4096 Jun  6 09:56 pilot3
[2025-06-06 11:28:36] -rw-r--r--. 1 boincer umatlas       529 Jun  6 11:27 boinc_task_state.xml
[2025-06-06 11:28:36] -rw-------. 1 boincer umatlas 202521384 Jun  6 11:27 HITS.44871837._102345.pool.root.1
[2025-06-06 11:28:36] -rw-r--r--. 1 boincer umatlas      6837 Jun  6 11:27 init_data.xml
[2025-06-06 11:28:36] -rw-------. 1 boincer umatlas      1041 Jun  6 11:27 memory_monitor_summary.json
[2025-06-06 11:28:36] -rw-------. 1 boincer umatlas    351785 Jun  6 11:27 log.44871837._102345.job.log.tgz.1
[2025-06-06 11:28:36] -rw-------. 1 boincer umatlas        95 Jun  6 11:27 pilot_heartbeat.json
[2025-06-06 11:28:36] -rw-------. 1 boincer umatlas      7749 Jun  6 11:28 heartbeat.json
[2025-06-06 11:28:36] -rw-r--r--. 1 boincer umatlas      8192 Jun  6 11:28 boinc_mmap_file
[2025-06-06 11:28:36] -rw-r--r--. 1 boincer umatlas        27 Jun  6 11:28 wrapper_checkpoint.txt
[2025-06-06 11:28:36] -rw-------. 1 boincer umatlas       823 Jun  6 11:28 pilotlog.txt
[2025-06-06 11:28:36] -rw-------. 1 boincer umatlas    529594 Jun  6 11:28 log.44871837._102345.job.log.1
[2025-06-06 11:28:36] -rw-------. 1 boincer umatlas       357 Jun  6 11:28 output.list
[2025-06-06 11:28:36] -rw-r--r--. 1 boincer umatlas       620 Jun  6 11:28 runtime_log
[2025-06-06 11:28:36] -rw-------. 1 boincer umatlas    901120 Jun  6 11:28 result.tar.gz
[2025-06-06 11:28:36] -rw-r--r--. 1 boincer umatlas      8647 Jun  6 11:28 runtime_log.err
[2025-06-06 11:28:36] -rw-------. 1 boincer umatlas       650 Jun  6 11:28 gRhKDmajmh7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm26nKDmuktaQm.diag
[2025-06-06 11:28:36] -rw-r--r--. 1 boincer umatlas     21847 Jun  6 11:28 stderr.txt
[2025-06-06 11:28:36] HITS file was successfully produced:
[2025-06-06 11:28:36] -rw-------. 1 boincer umatlas 202521384 Jun  6 11:27 shared/HITS.pool.root.1
[2025-06-06 11:28:36]  *** Contents of shared directory: ***
[2025-06-06 11:28:36] total 416856
[2025-06-06 11:28:36] -rw-r--r--. 2 boincer umatlas 222870182 Jun  6 09:56 ATLAS.root_0
[2025-06-06 11:28:36] -rw-r--r--. 2 boincer umatlas     15095 Jun  6 09:56 start_atlas.sh
[2025-06-06 11:28:36] -rw-r--r--. 2 boincer umatlas    541906 Jun  6 09:56 input.tar.gz
[2025-06-06 11:28:36] -rw-------. 1 boincer umatlas 202521384 Jun  6 11:27 HITS.pool.root.1
[2025-06-06 11:28:36] -rw-------. 1 boincer umatlas    901120 Jun  6 11:28 result.tar.gz
11:28:37 (3546317): run_atlas exited; CPU time 50216.470763
11:28:37 (3546317): called boinc_finish(0)

</stderr_txt>
]]>

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