Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:55:47 (2439938): wrapper (7.7.26015): starting
09:55:47 (2439938): wrapper: running run_atlas (--nthreads 8)
[2025-06-06 09:55:47] Arguments: --nthreads 8
[2025-06-06 09:55:47] Threads: 8
[2025-06-06 09:55:47] Checking for CVMFS
[2025-06-06 09:55:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 09:55:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 09:55:47] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 09:55:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 09:55:48] 2.12.6.0 912492 26266 479872 146861 3 12 39901859 40960001 15766 16776704 0 127361490 99.724 95358797 26919 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-06 09:55:48] CVMFS is ok
[2025-06-06 09:55:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 09:55:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 09:55:48] Further information can be found at the LHC@home message board.
[2025-06-06 09:55:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 09:55:48] Checking for apptainer binary...
[2025-06-06 09:55:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 09:55:48] Running /usr/bin/apptainer --version
[2025-06-06 09:55:48] apptainer version 1.4.1-1.el9
[2025-06-06 09:55:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 09:55:48] c7-10-12.aglt2.org
[2025-06-06 09:55:48] apptainer works
[2025-06-06 09:55:48] Set ATHENA_PROC_NUMBER=8
[2025-06-06 09:55:48] Set ATHENA_CORE_NUMBER=8
[2025-06-06 09:55:48] Starting ATLAS job with PandaID=6682203719
[2025-06-06 09:55:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 11:06:37]  *** The last 200 lines of the pilot log: ***
[2025-06-06 11:06:37]  lfn=log.45006595._057156.job.log.tgz.1
[2025-06-06 11:06:37]  mtime=0
[2025-06-06 11:06:37]  protocol_id=None
[2025-06-06 11:06:37]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 11:06:37]  replicas=None
[2025-06-06 11:06:37]  scope=mc23_13p6TeV
[2025-06-06 11:06:37]  status=None
[2025-06-06 11:06:37]  status_code=0
[2025-06-06 11:06:37]  storage_token=
[2025-06-06 11:06:37]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6682203719/log.45006595._057156.job.log.tgz.1
[2025-06-06 11:06:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/66/2a/log.45006595._057156.job.log.tgz.1
[2025-06-06 11:06:37]  workdir=None
[2025-06-06 11:06:37] ]
[2025-06-06 11:06:37] 2025-06-06 15:05:58,045 | INFO     | transferring file log.45006595._057156.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6682203719/log.45006595._057156.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-06 11:06:37] 2025-06-06 15:05:58,045 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6682203719/log.45006595._057156.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._057156.job
[2025-06-06 11:06:37] 2025-06-06 15:05:58,066 | INFO     | adding to output.list: log.45006595._057156.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/66/2a/log.45006595._057156.job.log.tg
[2025-06-06 11:06:37] 2025-06-06 15:05:58,067 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 11:06:37] 2025-06-06 15:05:58,067 | INFO     | summary of transferred files:
[2025-06-06 11:06:37] 2025-06-06 15:05:58,067 | INFO     |  -- lfn=log.45006595._057156.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 11:06:37] 2025-06-06 15:05:58,068 | INFO     | stage-out finished correctly
[2025-06-06 11:06:37] 2025-06-06 15:05:59,074 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 11:06:37] 2025-06-06 15:05:59,793 | INFO     | job 6682203719 has state=finished
[2025-06-06 11:06:37] 2025-06-06 15:05:59,793 | INFO     | preparing for final server update for job 6682203719 in state='finished'
[2025-06-06 11:06:37] 2025-06-06 15:05:59,852 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-06 11:06:37] 2025-06-06 15:05:59,853 | INFO     | this job has now completed (state=finished)
[2025-06-06 11:06:37] 2025-06-06 15:05:59,853 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 11:06:37] 2025-06-06 15:05:59,853 | INFO     | log transfer has been attempted: DONE
[2025-06-06 11:06:37] 2025-06-06 15:05:59,853 | INFO     | job 6682203719 has finished - writing final server update
[2025-06-06 11:06:37] 2025-06-06 15:05:59,853 | INFO     | total number of processed events: 400 (read)
[2025-06-06 11:06:37] 2025-06-06 15:05:59,855 | INFO     | executing command: lscpu
[2025-06-06 11:06:37] 2025-06-06 15:05:59,923 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 11:06:37] 2025-06-06 15:06:03,891 | WARNING  | process 2454307 can no longer be monitored (due to stat problems) - aborting
[2025-06-06 11:06:37] 2025-06-06 15:06:03,892 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6682203719/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 11:06:37] 2025-06-06 15:06:03,927 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 11:06:37] 2025-06-06 15:06:03,932 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3192.2983906250006
[2025-06-06 11:06:37] 2025-06-06 15:06:03,943 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6682203719/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 11:06:37] 2025-06-06 15:06:03,944 | INFO     | extracted standard info from prmon json
[2025-06-06 11:06:37] 2025-06-06 15:06:03,944 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 11:06:37] 2025-06-06 15:06:03,944 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 11:06:37] 2025-06-06 15:06:03,944 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 11:06:37] 2025-06-06 15:06:03,945 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 11:06:37] 2025-06-06 15:06:03,946 | INFO     | fitting pss+swap vs Time
[2025-06-06 11:06:37] 2025-06-06 15:06:03,946 | INFO     | sum of square deviations: 73882315.5
[2025-06-06 11:06:37] 2025-06-06 15:06:03,947 | INFO     | sum of deviations: -4901537300.500001
[2025-06-06 11:06:37] 2025-06-06 15:06:03,947 | INFO     | mean x: 1749220352.5
[2025-06-06 11:06:37] 2025-06-06 15:06:03,947 | INFO     | mean y: 2243263.1774193547
[2025-06-06 11:06:37] 2025-06-06 15:06:03,947 | INFO     | -- intersect: 116049889395.39035
[2025-06-06 11:06:37] 2025-06-06 15:06:03,947 | INFO     | intersect: 116049889395.39035
[2025-06-06 11:06:37] 2025-06-06 15:06:03,947 | INFO     | chi2: 0.11577886924167922
[2025-06-06 11:06:37] 2025-06-06 15:06:03,947 | INFO     | -- intersect: 116049889395.39035
[2025-06-06 11:06:37] 2025-06-06 15:06:03,947 | INFO     | current memory leak: -66.34 B/s (using 62 data points, chi2=0.12)
[2025-06-06 11:06:37] 2025-06-06 15:06:03,948 | INFO     | could have reported an average CPU frequency of 3240 MHz (6 samples)
[2025-06-06 11:06:37] 2025-06-06 15:06:03,948 | INFO     | ..............................
[2025-06-06 11:06:37] 2025-06-06 15:06:03,948 | INFO     | . Timing measurements:
[2025-06-06 11:06:37] 2025-06-06 15:06:03,948 | INFO     | . get job = 0 s
[2025-06-06 11:06:37] 2025-06-06 15:06:03,948 | INFO     | . initial setup = 2 s
[2025-06-06 11:06:37] 2025-06-06 15:06:03,948 | INFO     | . payload setup = 7 s
[2025-06-06 11:06:37] 2025-06-06 15:06:03,948 | INFO     | . stage-in = 0 s
[2025-06-06 11:06:37] 2025-06-06 15:06:03,948 | INFO     | . payload execution = 4171 s
[2025-06-06 11:06:37] 2025-06-06 15:06:03,948 | INFO     | . stage-out = 0 s
[2025-06-06 11:06:37] 2025-06-06 15:06:03,948 | INFO     | . log creation = 0 s
[2025-06-06 11:06:37] 2025-06-06 15:06:03,949 | INFO     | ..............................
[2025-06-06 11:06:37] 2025-06-06 15:06:04,246 | INFO     | 
[2025-06-06 11:06:37] 2025-06-06 15:06:04,246 | INFO     | job summary report
[2025-06-06 11:06:37] 2025-06-06 15:06:04,247 | INFO     | --------------------------------------------------
[2025-06-06 11:06:37] 2025-06-06 15:06:04,247 | INFO     | PanDA job id: 6682203719
[2025-06-06 11:06:37] 2025-06-06 15:06:04,247 | INFO     | task id: 45006595
[2025-06-06 11:06:37] 2025-06-06 15:06:04,247 | INFO     | errors: (none)
[2025-06-06 11:06:37] 2025-06-06 15:06:04,247 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 11:06:37] 2025-06-06 15:06:04,247 | INFO     | pilot state: finished 
[2025-06-06 11:06:37] 2025-06-06 15:06:04,247 | INFO     | transexitcode: 0
[2025-06-06 11:06:37] 2025-06-06 15:06:04,247 | INFO     | exeerrorcode: 0
[2025-06-06 11:06:37] 2025-06-06 15:06:04,247 | INFO     | exeerrordiag: 
[2025-06-06 11:06:37] 2025-06-06 15:06:04,247 | INFO     | exitcode: 0
[2025-06-06 11:06:37] 2025-06-06 15:06:04,247 | INFO     | exitmsg: OK
[2025-06-06 11:06:37] 2025-06-06 15:06:04,248 | INFO     | cpuconsumptiontime: 29141 s
[2025-06-06 11:06:37] 2025-06-06 15:06:04,248 | INFO     | nevents: 400
[2025-06-06 11:06:37] 2025-06-06 15:06:04,248 | INFO     | neventsw: 0
[2025-06-06 11:06:37] 2025-06-06 15:06:04,248 | INFO     | pid: 2454307
[2025-06-06 11:06:37] 2025-06-06 15:06:04,248 | INFO     | pgrp: 2454307
[2025-06-06 11:06:37] 2025-06-06 15:06:04,248 | INFO     | corecount: 8
[2025-06-06 11:06:37] 2025-06-06 15:06:04,248 | INFO     | event service: False
[2025-06-06 11:06:37] 2025-06-06 15:06:04,248 | INFO     | sizes: {0: 2397453, 1: 2397652, 5: 2397914, 11: 2397970, 4182: 2423832, 4183: 2432773, 4184: 2432957, 4189: 2433151}
[2025-06-06 11:06:37] 2025-06-06 15:06:04,248 | INFO     | --------------------------------------------------
[2025-06-06 11:06:37] 2025-06-06 15:06:04,248 | INFO     | 
[2025-06-06 11:06:37] 2025-06-06 15:06:04,249 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-06 11:06:37] 2025-06-06 15:06:04,271 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 11:06:37] 2025-06-06 15:06:04,271 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 11:06:37] 2025-06-06 15:06:04,271 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 11:06:37] 2025-06-06 15:06:04,272 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 11:06:37] 2025-06-06 15:06:04,272 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 11:06:37] 2025-06-06 15:06:04,272 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 11:06:37] 2025-06-06 15:06:04,272 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 11:06:37] 2025-06-06 15:06:04,272 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 11:06:37] 2025-06-06 15:06:04,272 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 11:06:37] 2025-06-06 15:06:04,272 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 11:06:37] 2025-06-06 15:06:04,272 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 11:06:37] 2025-06-06 15:06:04,272 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 11:06:37] 2025-06-06 15:06:04,272 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 11:06:37] 2025-06-06 15:06:04,272 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 11:06:37] 2025-06-06 15:06:04,273 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 11:06:37] 2025-06-06 15:06:04,273 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 11:06:37] 2025-06-06 15:06:04,273 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 11:06:37] 2025-06-06 15:06:04,273 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 11:06:37] 2025-06-06 15:06:04,273 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 11:06:37] 2025-06-06 15:06:04,273 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 11:06:37] 2025-06-06 15:06:04,273 | INFO     | job 6682203719 has completed (purged errors)
[2025-06-06 11:06:37] 2025-06-06 15:06:04,273 | INFO     | overall cleanup function is called
[2025-06-06 11:06:37] 2025-06-06 15:06:04,328 | INFO     | number of running child processes to parent process 2454307: 1
[2025-06-06 11:06:37] 2025-06-06 15:06:04,328 | INFO     | maximum number of monitored processes: 6
[2025-06-06 11:06:37] 2025-06-06 15:06:04,328 | INFO     | aborting job monitoring since job object (job id=6682203719) has expired
[2025-06-06 11:06:37] 2025-06-06 15:06:05,283 | INFO     | --- collectZombieJob: --- 10, [2454307]
[2025-06-06 11:06:37] 2025-06-06 15:06:05,284 | INFO     | zombie collector waiting for pid 2454307
[2025-06-06 11:06:37] 2025-06-06 15:06:05,284 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 11:06:37] 2025-06-06 15:06:05,284 | INFO     | collected zombie processes
[2025-06-06 11:06:37] 2025-06-06 15:06:05,284 | INFO     | will attempt to kill all subprocesses of pid=2454307
[2025-06-06 11:06:37] 2025-06-06 15:06:05,593 | INFO     | process IDs to be killed: [2454307] (in reverse order)
[2025-06-06 11:06:37] 2025-06-06 15:06:05,722 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 11:06:37] 2025-06-06 15:06:05,722 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 11:06:37] 2025-06-06 15:06:05,739 | INFO     | did not find any defunct processes belonging to 2454307
[2025-06-06 11:06:37] 2025-06-06 15:06:05,755 | INFO     | did not find any defunct processes belonging to 2454307
[2025-06-06 11:06:37] 2025-06-06 15:06:05,755 | INFO     | ready for new job
[2025-06-06 11:06:37] 2025-06-06 15:06:05,755 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 11:06:37] 2025-06-06 15:06:05,757 | INFO     | ***************************************
[2025-06-06 11:06:37] 2025-06-06 15:06:05,757 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-06 11:06:37] 2025-06-06 15:06:05,757 | INFO     | ***************************************
[2025-06-06 11:06:37] 2025-06-06 15:06:05,757 | INFO     | 
[2025-06-06 11:06:37] 2025-06-06 15:06:05,773 | INFO     | architecture information:
[2025-06-06 11:06:37] 2025-06-06 15:06:05,773 | INFO     | executing command: cat /etc/os-release
[2025-06-06 11:06:37] 2025-06-06 15:06:05,791 | INFO     | cat /etc/os-release:
[2025-06-06 11:06:37] NAME="CentOS Linux"
[2025-06-06 11:06:37] VERSION="7 (Core)"
[2025-06-06 11:06:37] ID="centos"
[2025-06-06 11:06:37] ID_LIKE="rhel fedora"
[2025-06-06 11:06:37] VERSION_ID="7"
[2025-06-06 11:06:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 11:06:37] ANSI_COLOR="0;31"
[2025-06-06 11:06:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 11:06:37] HOME_URL="https://www.centos.org/"
[2025-06-06 11:06:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 11:06:37] 
[2025-06-06 11:06:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 11:06:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 11:06:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 11:06:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 11:06:37] 
[2025-06-06 11:06:37] 2025-06-06 15:06:05,792 | INFO     | ***************************************
[2025-06-06 11:06:37] 2025-06-06 15:06:06,295 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-06 11:06:37] 2025-06-06 15:06:06,316 | INFO     | sufficient remaining disk space (86514860032 B)
[2025-06-06 11:06:37] 2025-06-06 15:06:06,317 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 11:06:37] 2025-06-06 15:06:06,317 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 11:06:37] 2025-06-06 15:06:06,317 | INFO     | update_server=False
[2025-06-06 11:06:37] 2025-06-06 15:06:06,317 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 11:06:37] 2025-06-06 15:06:06,317 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 11:06:37] 2025-06-06 15:06:06,318 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 11:06:37] 2025-06-06 15:06:06,318 | INFO     | aborting loop
[2025-06-06 11:06:37] 2025-06-06 15:06:06,744 | INFO     | all data control threads have been joined
[2025-06-06 11:06:37] 2025-06-06 15:06:06,932 | INFO     | all job control threads have been joined
[2025-06-06 11:06:37] 2025-06-06 15:06:07,323 | INFO     | [job] retrieve thread has finished
[2025-06-06 11:06:37] 2025-06-06 15:06:07,323 | INFO     | [job] job monitor thread has finished
[2025-06-06 11:06:37] 2025-06-06 15:06:07,748 | INFO     | [data] control thread has finished
[2025-06-06 11:06:37] 2025-06-06 15:06:07,802 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 11:06:37] 2025-06-06 15:06:07,824 | INFO     | all payload control threads have been joined
[2025-06-06 11:06:37] 2025-06-06 15:06:07,837 | INFO     | [payload] validate_post thread has finished
[2025-06-06 11:06:37] 2025-06-06 15:06:07,894 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 11:06:37] 2025-06-06 15:06:07,937 | INFO     | [job] control thread has finished
[2025-06-06 11:06:37] 2025-06-06 15:06:08,323 | INFO     | [data] copytool_out thread has finished
[2025-06-06 11:06:37] 2025-06-06 15:06:08,465 | INFO     | [payload] failed_post thread has finished
[2025-06-06 11:06:37] 2025-06-06 15:06:08,655 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 11:06:37] 2025-06-06 15:06:08,690 | INFO     | [data] copytool_in thread has finished
[2025-06-06 11:06:37] 2025-06-06 15:06:08,706 | INFO     | [job] validate thread has finished
[2025-06-06 11:06:37] 2025-06-06 15:06:08,829 | INFO     | [payload] control thread has finished
[2025-06-06 11:06:37] 2025-06-06 15:06:09,024 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 11:06:37] 2025-06-06 15:06:09,654 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 11:06:37] 2025-06-06 15:06:10,030 | INFO     | [job] queue monitor thread has finished
[2025-06-06 11:06:37] 2025-06-06 15:06:13,661 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 11:06:37] 2025-06-06 15:06:16,883 | INFO     | job.realtimelogging is not enabled
[2025-06-06 11:06:37] 2025-06-06 15:06:17,889 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 11:06:37] 2025-06-06 15:06:18,692 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140322696214336)>', '<ExcThread(monitor, started 140322059306752)>']
[2025-06-06 11:06:37] 2025-06-06 15:06:23,693 | INFO     | all workflow threads have been joined
[2025-06-06 11:06:37] 2025-06-06 15:06:23,693 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 11:06:37] 2025-06-06 15:06:23,694 | INFO     | traces error code: 0
[2025-06-06 11:06:37] 2025-06-06 15:06:23,694 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 11:06:37] 2025-06-06 15:06:36,970 | INFO     | PID=2443988 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-06 11:06:37] 2025-06-06 15:06:36,971 | INFO     | .. there are 15 such processes running
[2025-06-06 11:06:37] 2025-06-06 15:06:36,972 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 11:06:37] 2025-06-06 15:06:36,972 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 11:06:37] 2025-06-06 15:06:36,972 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 11:06:37] 2025-06-06 15:06:36,972 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 11:06:37] 2025-06-06 15:06:36,972 | INFO     | [monitor] control thread has ended
[2025-06-06 11:06:37] 2025-06-06 15:06:37,146 [wrapper] ==== pilot stdout END ====
[2025-06-06 11:06:37] 2025-06-06 15:06:37,148 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 11:06:37] 2025-06-06 15:06:37,150 [wrapper] pilotpid: 2443988
[2025-06-06 11:06:37] 2025-06-06 15:06:37,152 [wrapper] Pilot exit status: 0
[2025-06-06 11:06:37] 2025-06-06 15:06:37,165 [wrapper] pandaids: 6682203719
[2025-06-06 11:06:37] 2025-06-06 15:06:37,266 [wrapper] cleanup supervisor_pilot 2888363 2443989
[2025-06-06 11:06:37] 2025-06-06 15:06:37,270 [wrapper] Test setup, not cleaning
[2025-06-06 11:06:37] 2025-06-06 15:06:37,274 [wrapper] apfmon messages muted
[2025-06-06 11:06:37] 2025-06-06 15:06:37,277 [wrapper] ==== wrapper stdout END ====
[2025-06-06 11:06:37] 2025-06-06 15:06:37,281 [wrapper] ==== wrapper stderr END ====
[2025-06-06 11:06:37]  *** Error codes and diagnostics ***
[2025-06-06 11:06:37]     "exeErrorCode": 0,
[2025-06-06 11:06:37]     "exeErrorDiag": "",
[2025-06-06 11:06:37]     "pilotErrorCode": 0,
[2025-06-06 11:06:37]     "pilotErrorDiag": "",
[2025-06-06 11:06:37]  *** Listing of results directory ***
[2025-06-06 11:06:37] total 394300
[2025-06-06 11:06:37] -rwx------. 1 boincer umatlas     37140 Jun  6 09:55 runpilot2-wrapper.sh
[2025-06-06 11:06:37] -rw-r--r--. 1 boincer umatlas      5112 Jun  6 09:55 queuedata.json
[2025-06-06 11:06:37] -rw-r--r--. 1 boincer umatlas    529402 Jun  6 09:55 pilot3.tar.gz
[2025-06-06 11:06:37] -rw-r--r--. 1 boincer umatlas       100 Jun  6 09:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 11:06:37] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  6 09:55 run_atlas
[2025-06-06 11:06:37] -rw-r--r--. 1 boincer umatlas       105 Jun  6 09:55 job.xml
[2025-06-06 11:06:37] -rw-r--r--. 2 boincer umatlas 216484172 Jun  6 09:55 EVNT.45006593._000088.pool.root.1
[2025-06-06 11:06:37] -rw-r--r--. 2 boincer umatlas     15095 Jun  6 09:55 start_atlas.sh
[2025-06-06 11:06:37] drwxrwx--x. 2 boincer umatlas      4096 Jun  6 09:55 shared
[2025-06-06 11:06:37] -rw-r--r--. 2 boincer umatlas    541895 Jun  6 09:55 input.tar.gz
[2025-06-06 11:06:37] -rw-r--r--. 1 boincer umatlas         0 Jun  6 09:55 boinc_lockfile
[2025-06-06 11:06:37] -rw-r--r--. 1 boincer umatlas      2520 Jun  6 09:55 pandaJob.out
[2025-06-06 11:06:37] -rw-------. 1 boincer umatlas    985728 Jun  6 09:55 agis_schedconf.cvmfs.json
[2025-06-06 11:06:37] -rw-------. 1 boincer umatlas   1598969 Jun  6 09:55 agis_ddmendpoints.agis.ALL.json
[2025-06-06 11:06:37] drwx------. 4 boincer umatlas      4096 Jun  6 09:55 pilot3
[2025-06-06 11:06:37] -rw-r--r--. 1 boincer umatlas      6897 Jun  6 11:04 init_data.xml
[2025-06-06 11:06:37] -rw-------. 1 boincer umatlas 181948953 Jun  6 11:05 HITS.45006595._057156.pool.root.1
[2025-06-06 11:06:37] -rw-r--r--. 1 boincer umatlas       529 Jun  6 11:05 boinc_task_state.xml
[2025-06-06 11:06:37] -rw-------. 1 boincer umatlas      1030 Jun  6 11:05 memory_monitor_summary.json
[2025-06-06 11:06:37] -rw-------. 1 boincer umatlas    301097 Jun  6 11:05 log.45006595._057156.job.log.tgz.1
[2025-06-06 11:06:37] -rw-------. 1 boincer umatlas      7699 Jun  6 11:06 heartbeat.json
[2025-06-06 11:06:37] -rw-r--r--. 1 boincer umatlas      8192 Jun  6 11:06 boinc_mmap_file
[2025-06-06 11:06:37] -rw-r--r--. 1 boincer umatlas        27 Jun  6 11:06 wrapper_checkpoint.txt
[2025-06-06 11:06:37] -rw-------. 1 boincer umatlas       823 Jun  6 11:06 pilotlog.txt
[2025-06-06 11:06:37] -rw-------. 1 boincer umatlas        95 Jun  6 11:06 pilot_heartbeat.json
[2025-06-06 11:06:37] -rw-------. 1 boincer umatlas    420459 Jun  6 11:06 log.45006595._057156.job.log.1
[2025-06-06 11:06:37] -rw-------. 1 boincer umatlas       357 Jun  6 11:06 output.list
[2025-06-06 11:06:37] -rw-r--r--. 1 boincer umatlas       620 Jun  6 11:06 runtime_log
[2025-06-06 11:06:37] -rw-------. 1 boincer umatlas    737280 Jun  6 11:06 result.tar.gz
[2025-06-06 11:06:37] -rw-r--r--. 1 boincer umatlas      8660 Jun  6 11:06 runtime_log.err
[2025-06-06 11:06:37] -rw-------. 1 boincer umatlas       653 Jun  6 11:06 j9tKDmWimh7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm16nKDmG7sAjn.diag
[2025-06-06 11:06:37] -rw-r--r--. 1 boincer umatlas     21675 Jun  6 11:06 stderr.txt
[2025-06-06 11:06:37] HITS file was successfully produced:
[2025-06-06 11:06:37] -rw-------. 1 boincer umatlas 181948953 Jun  6 11:05 shared/HITS.pool.root.1
[2025-06-06 11:06:37]  *** Contents of shared directory: ***
[2025-06-06 11:06:37] total 390372
[2025-06-06 11:06:37] -rw-r--r--. 2 boincer umatlas 216484172 Jun  6 09:55 ATLAS.root_0
[2025-06-06 11:06:37] -rw-r--r--. 2 boincer umatlas     15095 Jun  6 09:55 start_atlas.sh
[2025-06-06 11:06:37] -rw-r--r--. 2 boincer umatlas    541895 Jun  6 09:55 input.tar.gz
[2025-06-06 11:06:37] -rw-------. 1 boincer umatlas 181948953 Jun  6 11:05 HITS.pool.root.1
[2025-06-06 11:06:37] -rw-------. 1 boincer umatlas    737280 Jun  6 11:06 result.tar.gz
11:06:39 (2439938): run_atlas exited; CPU time 29162.378787
11:06:39 (2439938): called boinc_finish(0)

</stderr_txt>
]]>

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