Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:42:21 (644): wrapper (7.7.26015): starting
09:42:21 (644): wrapper: running run_atlas (--nthreads 12)
[2025-06-06 09:42:21] Arguments: --nthreads 12
[2025-06-06 09:42:21] Threads: 12
[2025-06-06 09:42:21] Checking for CVMFS
[2025-06-06 09:42:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 09:42:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 09:42:21] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 09:42:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 09:42:21] 2.11.2.0 2947 38589 85624 146860 2 55 19843208 20275201 1 130560 0 16713226 99.981 7007808 7441 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-06 09:42:21] CVMFS is ok
[2025-06-06 09:42:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 09:42:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 09:42:21] Further information can be found at the LHC@home message board.
[2025-06-06 09:42:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 09:42:21] Checking for apptainer binary...
[2025-06-06 09:42:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 09:42:21] Running /usr/bin/apptainer --version
[2025-06-06 09:42:21] apptainer version 1.3.2-1.el7
[2025-06-06 09:42:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 09:42:23] c-205-18.aglt2.org
[2025-06-06 09:42:23] apptainer works
[2025-06-06 09:42:23] Set ATHENA_PROC_NUMBER=12
[2025-06-06 09:42:23] Set ATHENA_CORE_NUMBER=12
[2025-06-06 09:42:23] Starting ATLAS job with PandaID=6669443931
[2025-06-06 09:42:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 11:18:53]  *** The last 200 lines of the pilot log: ***
[2025-06-06 11:18:53]  lfn=log.44871837._096693.job.log.tgz.1
[2025-06-06 11:18:53]  mtime=0
[2025-06-06 11:18:53]  protocol_id=None
[2025-06-06 11:18:53]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 11:18:53]  replicas=None
[2025-06-06 11:18:53]  scope=mc23_13p6TeV
[2025-06-06 11:18:53]  status=None
[2025-06-06 11:18:53]  status_code=0
[2025-06-06 11:18:53]  storage_token=
[2025-06-06 11:18:53]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6669443931/log.44871837._096693.job.log.tgz.1
[2025-06-06 11:18:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d8/3f/log.44871837._096693.job.log.tgz.1
[2025-06-06 11:18:53]  workdir=None
[2025-06-06 11:18:53] ]
[2025-06-06 11:18:53] 2025-06-06 15:18:31,022 | INFO     | transferring file log.44871837._096693.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6669443931/log.44871837._096693.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-06 11:18:53] 2025-06-06 15:18:31,022 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6669443931/log.44871837._096693.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._096693.job
[2025-06-06 11:18:53] 2025-06-06 15:18:31,043 | INFO     | adding to output.list: log.44871837._096693.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d8/3f/log.44871837._096693.job.log.tg
[2025-06-06 11:18:53] 2025-06-06 15:18:31,044 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 11:18:53] 2025-06-06 15:18:31,044 | INFO     | summary of transferred files:
[2025-06-06 11:18:53] 2025-06-06 15:18:31,045 | INFO     |  -- lfn=log.44871837._096693.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 11:18:53] 2025-06-06 15:18:31,045 | INFO     | stage-out finished correctly
[2025-06-06 11:18:53] 2025-06-06 15:18:33,509 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 11:18:53] 2025-06-06 15:18:34,079 | WARNING  | process 10873 can no longer be monitored (due to stat problems) - aborting
[2025-06-06 11:18:53] 2025-06-06 15:18:34,080 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6669443931/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 11:18:53] 2025-06-06 15:18:34,166 | INFO     | number of running child processes to parent process 10873: 1
[2025-06-06 11:18:53] 2025-06-06 15:18:34,167 | INFO     | maximum number of monitored processes: 6
[2025-06-06 11:18:53] 2025-06-06 15:18:34,850 | INFO     | job 6669443931 has state=finished
[2025-06-06 11:18:53] 2025-06-06 15:18:34,851 | INFO     | preparing for final server update for job 6669443931 in state='finished'
[2025-06-06 11:18:53] 2025-06-06 15:18:34,851 | INFO     | this job has now completed (state=finished)
[2025-06-06 11:18:53] 2025-06-06 15:18:34,851 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 11:18:53] 2025-06-06 15:18:34,852 | INFO     | log transfer has been attempted: DONE
[2025-06-06 11:18:53] 2025-06-06 15:18:34,852 | INFO     | job 6669443931 has finished - writing final server update
[2025-06-06 11:18:53] 2025-06-06 15:18:34,852 | INFO     | total number of processed events: 400 (read)
[2025-06-06 11:18:53] 2025-06-06 15:18:34,854 | INFO     | executing command: lscpu
[2025-06-06 11:18:53] 2025-06-06 15:18:34,882 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 11:18:53] 2025-06-06 15:18:36,669 | INFO     | monitor loop #431: job 0:6669443931 is in state 'finished'
[2025-06-06 11:18:53] 2025-06-06 15:18:36,669 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 11:18:53] 2025-06-06 15:18:39,172 | INFO     | monitor loop #432: job 0:6669443931 is in state 'finished'
[2025-06-06 11:18:53] 2025-06-06 15:18:39,172 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 11:18:53] 2025-06-06 15:18:39,558 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-06 11:18:53] 2025-06-06 15:18:39,558 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6669443931/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 11:18:53] 2025-06-06 15:18:39,559 | INFO     | extracted standard info from prmon json
[2025-06-06 11:18:53] 2025-06-06 15:18:39,559 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 11:18:53] 2025-06-06 15:18:39,559 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 11:18:53] 2025-06-06 15:18:39,560 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 11:18:53] 2025-06-06 15:18:39,560 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 11:18:53] 2025-06-06 15:18:39,562 | INFO     | fitting pss+swap vs Time
[2025-06-06 11:18:53] 2025-06-06 15:18:39,563 | INFO     | sum of square deviations: 204163828.0
[2025-06-06 11:18:53] 2025-06-06 15:18:39,563 | INFO     | sum of deviations: -3053661830.0
[2025-06-06 11:18:53] 2025-06-06 15:18:39,564 | INFO     | mean x: 1749220316.0
[2025-06-06 11:18:53] 2025-06-06 15:18:39,564 | INFO     | mean y: 2698528.3333333335
[2025-06-06 11:18:53] 2025-06-06 15:18:39,564 | INFO     | -- intersect: 26165645038.278954
[2025-06-06 11:18:53] 2025-06-06 15:18:39,564 | INFO     | intersect: 26165645038.278954
[2025-06-06 11:18:53] 2025-06-06 15:18:39,564 | INFO     | chi2: 0.06183288067810766
[2025-06-06 11:18:53] 2025-06-06 15:18:39,565 | INFO     | -- intersect: 26165645038.278954
[2025-06-06 11:18:53] 2025-06-06 15:18:39,565 | INFO     | current memory leak: -14.96 B/s (using 87 data points, chi2=0.06)
[2025-06-06 11:18:53] 2025-06-06 15:18:39,565 | INFO     | ..............................
[2025-06-06 11:18:53] 2025-06-06 15:18:39,566 | INFO     | . Timing measurements:
[2025-06-06 11:18:53] 2025-06-06 15:18:39,566 | INFO     | . get job = 0 s
[2025-06-06 11:18:53] 2025-06-06 15:18:39,566 | INFO     | . initial setup = 2 s
[2025-06-06 11:18:53] 2025-06-06 15:18:39,566 | INFO     | . payload setup = 9 s
[2025-06-06 11:18:53] 2025-06-06 15:18:39,566 | INFO     | . stage-in = 0 s
[2025-06-06 11:18:53] 2025-06-06 15:18:39,566 | INFO     | . payload execution = 5722 s
[2025-06-06 11:18:53] 2025-06-06 15:18:39,566 | INFO     | . stage-out = 0 s
[2025-06-06 11:18:53] 2025-06-06 15:18:39,567 | INFO     | . log creation = 0 s
[2025-06-06 11:18:53] 2025-06-06 15:18:39,567 | INFO     | ..............................
[2025-06-06 11:18:53] 2025-06-06 15:18:39,650 | INFO     | 
[2025-06-06 11:18:53] 2025-06-06 15:18:39,650 | INFO     | job summary report
[2025-06-06 11:18:53] 2025-06-06 15:18:39,650 | INFO     | --------------------------------------------------
[2025-06-06 11:18:53] 2025-06-06 15:18:39,650 | INFO     | PanDA job id: 6669443931
[2025-06-06 11:18:53] 2025-06-06 15:18:39,651 | INFO     | task id: 44871837
[2025-06-06 11:18:53] 2025-06-06 15:18:39,651 | INFO     | errors: (none)
[2025-06-06 11:18:53] 2025-06-06 15:18:39,651 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 11:18:53] 2025-06-06 15:18:39,651 | INFO     | pilot state: finished 
[2025-06-06 11:18:53] 2025-06-06 15:18:39,651 | INFO     | transexitcode: 0
[2025-06-06 11:18:53] 2025-06-06 15:18:39,651 | INFO     | exeerrorcode: 0
[2025-06-06 11:18:53] 2025-06-06 15:18:39,651 | INFO     | exeerrordiag: 
[2025-06-06 11:18:53] 2025-06-06 15:18:39,652 | INFO     | exitcode: 0
[2025-06-06 11:18:53] 2025-06-06 15:18:39,652 | INFO     | exitmsg: OK
[2025-06-06 11:18:53] 2025-06-06 15:18:39,652 | INFO     | cpuconsumptiontime: 61440 s
[2025-06-06 11:18:53] 2025-06-06 15:18:39,652 | INFO     | nevents: 400
[2025-06-06 11:18:53] 2025-06-06 15:18:39,652 | INFO     | neventsw: 0
[2025-06-06 11:18:53] 2025-06-06 15:18:39,652 | INFO     | pid: 10873
[2025-06-06 11:18:53] 2025-06-06 15:18:39,653 | INFO     | pgrp: 10873
[2025-06-06 11:18:53] 2025-06-06 15:18:39,653 | INFO     | corecount: 12
[2025-06-06 11:18:53] 2025-06-06 15:18:39,653 | INFO     | event service: False
[2025-06-06 11:18:53] 2025-06-06 15:18:39,653 | INFO     | sizes: {0: 2397392, 1: 2397392, 5: 2397626, 11: 2397682, 5736: 2424182, 5738: 2433123, 5741: 2433307, 5747: 2433477}
[2025-06-06 11:18:53] 2025-06-06 15:18:39,653 | INFO     | --------------------------------------------------
[2025-06-06 11:18:53] 2025-06-06 15:18:39,653 | INFO     | 
[2025-06-06 11:18:53] 2025-06-06 15:18:39,654 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-06 11:18:53] 2025-06-06 15:18:39,676 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 11:18:53] 2025-06-06 15:18:39,677 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 11:18:53] 2025-06-06 15:18:39,677 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 11:18:53] 2025-06-06 15:18:39,677 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 11:18:53] 2025-06-06 15:18:39,677 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 11:18:53] 2025-06-06 15:18:39,677 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 11:18:53] 2025-06-06 15:18:39,677 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 11:18:53] 2025-06-06 15:18:39,678 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 11:18:53] 2025-06-06 15:18:39,678 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 11:18:53] 2025-06-06 15:18:39,678 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 11:18:53] 2025-06-06 15:18:39,678 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 11:18:53] 2025-06-06 15:18:39,678 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 11:18:53] 2025-06-06 15:18:39,678 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 11:18:53] 2025-06-06 15:18:39,679 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 11:18:53] 2025-06-06 15:18:39,679 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 11:18:53] 2025-06-06 15:18:39,679 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 11:18:53] 2025-06-06 15:18:39,679 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 11:18:53] 2025-06-06 15:18:39,679 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 11:18:53] 2025-06-06 15:18:39,679 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 11:18:53] 2025-06-06 15:18:39,680 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 11:18:53] 2025-06-06 15:18:39,680 | INFO     | job 6669443931 has completed (purged errors)
[2025-06-06 11:18:53] 2025-06-06 15:18:39,680 | INFO     | overall cleanup function is called
[2025-06-06 11:18:53] 2025-06-06 15:18:40,688 | INFO     | --- collectZombieJob: --- 10, [10873]
[2025-06-06 11:18:53] 2025-06-06 15:18:40,688 | INFO     | zombie collector waiting for pid 10873
[2025-06-06 11:18:53] 2025-06-06 15:18:40,688 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 11:18:53] 2025-06-06 15:18:40,688 | INFO     | collected zombie processes
[2025-06-06 11:18:53] 2025-06-06 15:18:40,689 | INFO     | will attempt to kill all subprocesses of pid=10873
[2025-06-06 11:18:53] 2025-06-06 15:18:40,779 | INFO     | process IDs to be killed: [10873] (in reverse order)
[2025-06-06 11:18:53] 2025-06-06 15:18:40,829 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 11:18:53] 2025-06-06 15:18:40,830 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 11:18:53] 2025-06-06 15:18:40,833 | INFO     | did not find any defunct processes belonging to 10873
[2025-06-06 11:18:53] 2025-06-06 15:18:40,836 | INFO     | did not find any defunct processes belonging to 10873
[2025-06-06 11:18:53] 2025-06-06 15:18:40,837 | INFO     | ready for new job
[2025-06-06 11:18:53] 2025-06-06 15:18:40,837 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 11:18:53] 2025-06-06 15:18:40,838 | INFO     | **************************************
[2025-06-06 11:18:53] 2025-06-06 15:18:40,838 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 11:18:53] 2025-06-06 15:18:40,838 | INFO     | **************************************
[2025-06-06 11:18:53] 2025-06-06 15:18:40,839 | INFO     | 
[2025-06-06 11:18:53] 2025-06-06 15:18:40,839 | INFO     | architecture information:
[2025-06-06 11:18:53] 2025-06-06 15:18:40,840 | INFO     | executing command: cat /etc/os-release
[2025-06-06 11:18:53] 2025-06-06 15:18:40,854 | INFO     | cat /etc/os-release:
[2025-06-06 11:18:53] NAME="CentOS Linux"
[2025-06-06 11:18:53] VERSION="7 (Core)"
[2025-06-06 11:18:53] ID="centos"
[2025-06-06 11:18:53] ID_LIKE="rhel fedora"
[2025-06-06 11:18:53] VERSION_ID="7"
[2025-06-06 11:18:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 11:18:53] ANSI_COLOR="0;31"
[2025-06-06 11:18:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 11:18:53] HOME_URL="https://www.centos.org/"
[2025-06-06 11:18:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 11:18:53] 
[2025-06-06 11:18:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 11:18:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 11:18:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 11:18:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 11:18:53] 
[2025-06-06 11:18:53] 2025-06-06 15:18:40,854 | INFO     | **************************************
[2025-06-06 11:18:53] 2025-06-06 15:18:41,357 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-06 11:18:53] 2025-06-06 15:18:41,373 | INFO     | sufficient remaining disk space (29388439552 B)
[2025-06-06 11:18:53] 2025-06-06 15:18:41,373 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 11:18:53] 2025-06-06 15:18:41,374 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 11:18:53] 2025-06-06 15:18:41,374 | INFO     | update_server=False
[2025-06-06 11:18:53] 2025-06-06 15:18:41,374 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 11:18:53] 2025-06-06 15:18:41,374 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 11:18:53] 2025-06-06 15:18:41,375 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 11:18:53] 2025-06-06 15:18:41,375 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 11:18:53] 2025-06-06 15:18:41,375 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 11:18:53] 2025-06-06 15:18:41,376 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 11:18:53] 2025-06-06 15:18:41,641 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 11:18:53] 2025-06-06 15:18:41,675 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-06 11:18:53] 2025-06-06 15:18:41,675 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-06 11:18:53] 2025-06-06 15:18:41,675 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 11:18:53] 2025-06-06 15:18:41,676 | INFO     | will abort loop
[2025-06-06 11:18:53] 2025-06-06 15:18:41,877 | INFO     | all job control threads have been joined
[2025-06-06 11:18:53] 2025-06-06 15:18:42,380 | INFO     | [job] retrieve thread has finished
[2025-06-06 11:18:53] 2025-06-06 15:18:42,381 | INFO     | [job] queue monitor thread has finished
[2025-06-06 11:18:53] 2025-06-06 15:18:42,429 | INFO     | all data control threads have been joined
[2025-06-06 11:18:53] 2025-06-06 15:18:42,469 | INFO     | all payload control threads have been joined
[2025-06-06 11:18:53] 2025-06-06 15:18:42,681 | INFO     | [job] job monitor thread has finished
[2025-06-06 11:18:53] 2025-06-06 15:18:42,770 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 11:18:53] 2025-06-06 15:18:42,790 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 11:18:53] 2025-06-06 15:18:42,882 | INFO     | [job] control thread has finished
[2025-06-06 11:18:53] 2025-06-06 15:18:42,891 | INFO     | [payload] validate_post thread has finished
[2025-06-06 11:18:53] 2025-06-06 15:18:43,231 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 11:18:53] 2025-06-06 15:18:43,328 | INFO     | [data] copytool_in thread has finished
[2025-06-06 11:18:53] 2025-06-06 15:18:43,434 | INFO     | [data] control thread has finished
[2025-06-06 11:18:53] 2025-06-06 15:18:43,474 | INFO     | [payload] control thread has finished
[2025-06-06 11:18:53] 2025-06-06 15:18:43,645 | INFO     | [data] copytool_out thread has finished
[2025-06-06 11:18:53] 2025-06-06 15:18:43,693 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 11:18:53] 2025-06-06 15:18:43,739 | INFO     | [payload] failed_post thread has finished
[2025-06-06 11:18:53] 2025-06-06 15:18:43,753 | INFO     | [job] validate thread has finished
[2025-06-06 11:18:53] 2025-06-06 15:18:44,105 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 11:18:53] 2025-06-06 15:18:48,111 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 11:18:53] 2025-06-06 15:18:48,680 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139771563304768)>', '<ExcThread(monitor, started 139771336414976)>']
[2025-06-06 11:18:53] 2025-06-06 15:18:49,412 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 11:18:53] 2025-06-06 15:18:49,412 | INFO     | [monitor] control thread has ended
[2025-06-06 11:18:53] 2025-06-06 15:18:53,680 | INFO     | all workflow threads have been joined
[2025-06-06 11:18:53] 2025-06-06 15:18:53,680 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 11:18:53] 2025-06-06 15:18:53,680 | INFO     | traces error code: 0
[2025-06-06 11:18:53] 2025-06-06 15:18:53,681 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 11:18:53] 2025-06-06 15:18:53,758 [wrapper] ==== pilot stdout END ====
[2025-06-06 11:18:53] 2025-06-06 15:18:53,762 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 11:18:53] 2025-06-06 15:18:53,766 [wrapper] pilotpid: 4422
[2025-06-06 11:18:53] 2025-06-06 15:18:53,769 [wrapper] Pilot exit status: 0
[2025-06-06 11:18:53] 2025-06-06 15:18:53,784 [wrapper] pandaids: 6669443931
[2025-06-06 11:18:53] 2025-06-06 15:18:53,821 [wrapper] cleanup supervisor_pilot  3197 4423
[2025-06-06 11:18:53] 2025-06-06 15:18:53,825 [wrapper] Test setup, not cleaning
[2025-06-06 11:18:53] 2025-06-06 15:18:53,828 [wrapper] apfmon messages muted
[2025-06-06 11:18:53] 2025-06-06 15:18:53,832 [wrapper] ==== wrapper stdout END ====
[2025-06-06 11:18:53] 2025-06-06 15:18:53,836 [wrapper] ==== wrapper stderr END ====
[2025-06-06 11:18:53]  *** Error codes and diagnostics ***
[2025-06-06 11:18:53]     "exeErrorCode": 0,
[2025-06-06 11:18:53]     "exeErrorDiag": "",
[2025-06-06 11:18:53]     "pilotErrorCode": 0,
[2025-06-06 11:18:53]     "pilotErrorDiag": "",
[2025-06-06 11:18:53]  *** Listing of results directory ***
[2025-06-06 11:18:53] total 412060
[2025-06-06 11:18:53] -rw-r--r-- 1 boincer umatlas    495897 May 29 03:06 pilot3.tar.gz
[2025-06-06 11:18:53] -rw-r--r-- 1 boincer umatlas      5111 May 29 03:12 queuedata.json
[2025-06-06 11:18:53] -rwx------ 1 boincer umatlas     37140 May 29 03:15 runpilot2-wrapper.sh
[2025-06-06 11:18:53] -rw-r--r-- 1 boincer umatlas       100 Jun  6 09:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 11:18:53] -rwxr-xr-x 1 boincer umatlas      7986 Jun  6 09:42 run_atlas
[2025-06-06 11:18:53] -rw-r--r-- 1 boincer umatlas       105 Jun  6 09:42 job.xml
[2025-06-06 11:18:53] -rw-r--r-- 2 boincer umatlas 222709003 Jun  6 09:42 EVNT.44871834._003811.pool.root.1
[2025-06-06 11:18:53] -rw-r--r-- 2 boincer umatlas     15093 Jun  6 09:42 start_atlas.sh
[2025-06-06 11:18:53] drwxrwx--x 2 boincer umatlas      4096 Jun  6 09:42 shared
[2025-06-06 11:18:53] -rw-r--r-- 2 boincer umatlas    508879 Jun  6 09:42 input.tar.gz
[2025-06-06 11:18:53] -rw-r--r-- 1 boincer umatlas         0 Jun  6 09:42 boinc_lockfile
[2025-06-06 11:18:53] -rw-r--r-- 1 boincer umatlas      2559 Jun  6 09:42 pandaJob.out
[2025-06-06 11:18:53] -rw------- 1 boincer umatlas    985728 Jun  6 09:42 agis_schedconf.cvmfs.json
[2025-06-06 11:18:53] -rw------- 1 boincer umatlas   1598969 Jun  6 09:42 agis_ddmendpoints.agis.ALL.json
[2025-06-06 11:18:53] drwx------ 4 boincer umatlas      4096 Jun  6 09:42 pilot3
[2025-06-06 11:18:53] -rw------- 1 boincer umatlas        95 Jun  6 11:17 pilot_heartbeat.json
[2025-06-06 11:18:53] -rw------- 1 boincer umatlas 193587933 Jun  6 11:17 HITS.44871837._096693.pool.root.1
[2025-06-06 11:18:53] -rw-r--r-- 1 boincer umatlas      5868 Jun  6 11:18 init_data.xml
[2025-06-06 11:18:53] -rw-r--r-- 1 boincer umatlas       529 Jun  6 11:18 boinc_task_state.xml
[2025-06-06 11:18:53] -rw------- 1 boincer umatlas      1050 Jun  6 11:18 memory_monitor_summary.json
[2025-06-06 11:18:53] -rw------- 1 boincer umatlas    371528 Jun  6 11:18 log.44871837._096693.job.log.tgz.1
[2025-06-06 11:18:53] -rw------- 1 boincer umatlas      7750 Jun  6 11:18 heartbeat.json
[2025-06-06 11:18:53] -rw-r--r-- 1 boincer umatlas        27 Jun  6 11:18 wrapper_checkpoint.txt
[2025-06-06 11:18:53] -rw-r--r-- 1 boincer umatlas      8192 Jun  6 11:18 boinc_mmap_file
[2025-06-06 11:18:53] -rw------- 1 boincer umatlas      4662 Jun  6 11:18 pilotlog.txt
[2025-06-06 11:18:53] -rw------- 1 boincer umatlas    539773 Jun  6 11:18 log.44871837._096693.job.log.1
[2025-06-06 11:18:53] -rw------- 1 boincer umatlas       357 Jun  6 11:18 output.list
[2025-06-06 11:18:53] -rw-r--r-- 1 boincer umatlas       620 Jun  6 11:18 runtime_log
[2025-06-06 11:18:53] -rw------- 1 boincer umatlas    931840 Jun  6 11:18 result.tar.gz
[2025-06-06 11:18:53] -rw------- 1 boincer umatlas       659 Jun  6 11:18 x02LDmafme7n9Rq4apOajLDm4fhM0noT9bVof3QYDmunUKDmjFpOFo.diag
[2025-06-06 11:18:53] -rw-r--r-- 1 boincer umatlas      8661 Jun  6 11:18 runtime_log.err
[2025-06-06 11:18:53] -rw-r--r-- 1 boincer umatlas     21579 Jun  6 11:18 stderr.txt
[2025-06-06 11:18:53] HITS file was successfully produced:
[2025-06-06 11:18:53] -rw------- 1 boincer umatlas 193587933 Jun  6 11:17 shared/HITS.pool.root.1
[2025-06-06 11:18:53]  *** Contents of shared directory: ***
[2025-06-06 11:18:53] total 407976
[2025-06-06 11:18:53] -rw-r--r-- 2 boincer umatlas 222709003 Jun  6 09:42 ATLAS.root_0
[2025-06-06 11:18:53] -rw-r--r-- 2 boincer umatlas     15093 Jun  6 09:42 start_atlas.sh
[2025-06-06 11:18:53] -rw-r--r-- 2 boincer umatlas    508879 Jun  6 09:42 input.tar.gz
[2025-06-06 11:18:53] -rw------- 1 boincer umatlas 193587933 Jun  6 11:17 HITS.pool.root.1
[2025-06-06 11:18:53] -rw------- 1 boincer umatlas    931840 Jun  6 11:18 result.tar.gz
11:18:55 (644): run_atlas exited; CPU time 61410.955211
11:18:55 (644): called boinc_finish(0)

</stderr_txt>
]]>

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