Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:36:52 (2756729): wrapper (7.7.26015): starting
08:36:52 (2756729): wrapper: running run_atlas (--nthreads 8)
[2025-06-06 08:36:52] Arguments: --nthreads 8
[2025-06-06 08:36:52] Threads: 8
[2025-06-06 08:36:52] Checking for CVMFS
[2025-06-06 08:36:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 08:36:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 08:36:53] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 08:36:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 08:36:53] 2.12.6.0 8999 40194 509196 146859 2 80 19258667 32935936 14608 16776704 1 177196291 99.600 193434368 25582 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-06 08:36:53] CVMFS is ok
[2025-06-06 08:36:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 08:36:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 08:36:53] Further information can be found at the LHC@home message board.
[2025-06-06 08:36:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 08:36:53] Checking for apptainer binary...
[2025-06-06 08:36:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 08:36:53] Running /usr/bin/apptainer --version
[2025-06-06 08:36:53] apptainer version 1.4.1-1.el9
[2025-06-06 08:36:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 08:36:53] c7-11-16.aglt2.org
[2025-06-06 08:36:53] apptainer works
[2025-06-06 08:36:53] Set ATHENA_PROC_NUMBER=8
[2025-06-06 08:36:53] Set ATHENA_CORE_NUMBER=8
[2025-06-06 08:36:53] Starting ATLAS job with PandaID=6677443229
[2025-06-06 08:36:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 09:37:36]  *** The last 200 lines of the pilot log: ***
[2025-06-06 09:37:36]  filesize=281829
[2025-06-06 09:37:36]  filetype=log
[2025-06-06 09:37:36]  guid=060740c1-a68a-4e3d-a0ee-ee821dc2bdfc
[2025-06-06 09:37:36]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-06 09:37:36]  is_altstaged=None
[2025-06-06 09:37:36]  is_tar=False
[2025-06-06 09:37:36]  lfn=log.45006595._016805.job.log.tgz.1
[2025-06-06 09:37:36]  mtime=0
[2025-06-06 09:37:36]  protocol_id=None
[2025-06-06 09:37:36]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 09:37:36]  replicas=None
[2025-06-06 09:37:36]  scope=mc23_13p6TeV
[2025-06-06 09:37:36]  status=None
[2025-06-06 09:37:36]  status_code=0
[2025-06-06 09:37:36]  storage_token=
[2025-06-06 09:37:36]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6677443229/log.45006595._016805.job.log.tgz.1
[2025-06-06 09:37:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1b/25/log.45006595._016805.job.log.tgz.1
[2025-06-06 09:37:36]  workdir=None
[2025-06-06 09:37:36] ]
[2025-06-06 09:37:36] 2025-06-06 13:37:15,441 | INFO     | transferring file log.45006595._016805.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6677443229/log.45006595._016805.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-06 09:37:36] 2025-06-06 13:37:15,441 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6677443229/log.45006595._016805.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._016805.job
[2025-06-06 09:37:36] 2025-06-06 13:37:15,463 | INFO     | adding to output.list: log.45006595._016805.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1b/25/log.45006595._016805.job.log.tg
[2025-06-06 09:37:36] 2025-06-06 13:37:15,464 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 09:37:36] 2025-06-06 13:37:15,464 | INFO     | summary of transferred files:
[2025-06-06 09:37:36] 2025-06-06 13:37:15,464 | INFO     |  -- lfn=log.45006595._016805.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 09:37:36] 2025-06-06 13:37:15,464 | INFO     | stage-out finished correctly
[2025-06-06 09:37:36] 2025-06-06 13:37:16,373 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 09:37:36] 2025-06-06 13:37:18,390 | INFO     | job 6677443229 has state=finished
[2025-06-06 09:37:36] 2025-06-06 13:37:18,391 | INFO     | preparing for final server update for job 6677443229 in state='finished'
[2025-06-06 09:37:36] 2025-06-06 13:37:18,391 | INFO     | this job has now completed (state=finished)
[2025-06-06 09:37:36] 2025-06-06 13:37:18,392 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 09:37:36] 2025-06-06 13:37:18,392 | INFO     | log transfer has been attempted: DONE
[2025-06-06 09:37:36] 2025-06-06 13:37:18,392 | INFO     | job 6677443229 has finished - writing final server update
[2025-06-06 09:37:36] 2025-06-06 13:37:18,392 | INFO     | total number of processed events: 400 (read)
[2025-06-06 09:37:36] 2025-06-06 13:37:18,437 | INFO     | executing command: lscpu
[2025-06-06 09:37:36] 2025-06-06 13:37:18,532 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 09:37:36] 2025-06-06 13:37:20,517 | WARNING  | process 2777727 can no longer be monitored (due to stat problems) - aborting
[2025-06-06 09:37:36] 2025-06-06 13:37:20,517 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677443229/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 09:37:36] 2025-06-06 13:37:20,808 | INFO     | number of running child processes to parent process 2777727: 1
[2025-06-06 09:37:36] 2025-06-06 13:37:20,808 | INFO     | maximum number of monitored processes: 6
[2025-06-06 09:37:36] 2025-06-06 13:37:22,836 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 09:37:36] 2025-06-06 13:37:22,836 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677443229/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 09:37:36] 2025-06-06 13:37:22,837 | INFO     | extracted standard info from prmon json
[2025-06-06 09:37:36] 2025-06-06 13:37:22,837 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 09:37:36] 2025-06-06 13:37:22,837 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 09:37:36] 2025-06-06 13:37:22,837 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 09:37:36] 2025-06-06 13:37:22,838 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 09:37:36] 2025-06-06 13:37:22,839 | INFO     | fitting pss+swap vs Time
[2025-06-06 09:37:36] 2025-06-06 13:37:22,839 | INFO     | sum of square deviations: 43584073.0
[2025-06-06 09:37:36] 2025-06-06 13:37:22,839 | INFO     | sum of deviations: -8324252943.0
[2025-06-06 09:37:36] 2025-06-06 13:37:22,840 | INFO     | mean x: 1749215312.5
[2025-06-06 09:37:36] 2025-06-06 13:37:22,840 | INFO     | mean y: 2453018.730769231
[2025-06-06 09:37:36] 2025-06-06 13:37:22,840 | INFO     | -- intersect: 334090336751.36835
[2025-06-06 09:37:36] 2025-06-06 13:37:22,840 | INFO     | intersect: 334090336751.36835
[2025-06-06 09:37:36] 2025-06-06 13:37:22,840 | INFO     | chi2: 0.12422116210060921
[2025-06-06 09:37:36] 2025-06-06 13:37:22,840 | INFO     | -- intersect: 334090336751.36835
[2025-06-06 09:37:36] 2025-06-06 13:37:22,840 | INFO     | current memory leak: -190.99 B/s (using 52 data points, chi2=0.12)
[2025-06-06 09:37:36] 2025-06-06 13:37:22,841 | INFO     | ..............................
[2025-06-06 09:37:36] 2025-06-06 13:37:22,841 | INFO     | . Timing measurements:
[2025-06-06 09:37:36] 2025-06-06 13:37:22,841 | INFO     | . get job = 0 s
[2025-06-06 09:37:36] 2025-06-06 13:37:22,841 | INFO     | . initial setup = 2 s
[2025-06-06 09:37:36] 2025-06-06 13:37:22,841 | INFO     | . payload setup = 7 s
[2025-06-06 09:37:36] 2025-06-06 13:37:22,841 | INFO     | . stage-in = 0 s
[2025-06-06 09:37:36] 2025-06-06 13:37:22,841 | INFO     | . payload execution = 3583 s
[2025-06-06 09:37:36] 2025-06-06 13:37:22,841 | INFO     | . stage-out = 0 s
[2025-06-06 09:37:36] 2025-06-06 13:37:22,841 | INFO     | . log creation = 0 s
[2025-06-06 09:37:36] 2025-06-06 13:37:22,841 | INFO     | ..............................
[2025-06-06 09:37:36] 2025-06-06 13:37:23,062 | INFO     | 
[2025-06-06 09:37:36] 2025-06-06 13:37:23,062 | INFO     | job summary report
[2025-06-06 09:37:36] 2025-06-06 13:37:23,062 | INFO     | --------------------------------------------------
[2025-06-06 09:37:36] 2025-06-06 13:37:23,062 | INFO     | PanDA job id: 6677443229
[2025-06-06 09:37:36] 2025-06-06 13:37:23,062 | INFO     | task id: 45006595
[2025-06-06 09:37:36] 2025-06-06 13:37:23,062 | INFO     | errors: (none)
[2025-06-06 09:37:36] 2025-06-06 13:37:23,062 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 09:37:36] 2025-06-06 13:37:23,062 | INFO     | pilot state: finished 
[2025-06-06 09:37:36] 2025-06-06 13:37:23,063 | INFO     | transexitcode: 0
[2025-06-06 09:37:36] 2025-06-06 13:37:23,063 | INFO     | exeerrorcode: 0
[2025-06-06 09:37:36] 2025-06-06 13:37:23,063 | INFO     | exeerrordiag: 
[2025-06-06 09:37:36] 2025-06-06 13:37:23,063 | INFO     | exitcode: 0
[2025-06-06 09:37:36] 2025-06-06 13:37:23,063 | INFO     | exitmsg: OK
[2025-06-06 09:37:36] 2025-06-06 13:37:23,063 | INFO     | cpuconsumptiontime: 25570 s
[2025-06-06 09:37:36] 2025-06-06 13:37:23,063 | INFO     | nevents: 400
[2025-06-06 09:37:36] 2025-06-06 13:37:23,063 | INFO     | neventsw: 0
[2025-06-06 09:37:36] 2025-06-06 13:37:23,063 | INFO     | pid: 2777727
[2025-06-06 09:37:36] 2025-06-06 13:37:23,063 | INFO     | pgrp: 2777727
[2025-06-06 09:37:36] 2025-06-06 13:37:23,063 | INFO     | corecount: 8
[2025-06-06 09:37:36] 2025-06-06 13:37:23,063 | INFO     | event service: False
[2025-06-06 09:37:36] 2025-06-06 13:37:23,063 | INFO     | sizes: {0: 2397338, 5: 2397544, 11: 2397600, 3594: 2423196, 3596: 2432193, 3603: 2432307}
[2025-06-06 09:37:36] 2025-06-06 13:37:23,063 | INFO     | --------------------------------------------------
[2025-06-06 09:37:36] 2025-06-06 13:37:23,063 | INFO     | 
[2025-06-06 09:37:36] 2025-06-06 13:37:23,064 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-06 09:37:36] 2025-06-06 13:37:23,085 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 09:37:36] 2025-06-06 13:37:23,085 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 09:37:36] 2025-06-06 13:37:23,085 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 09:37:36] 2025-06-06 13:37:23,085 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 09:37:36] 2025-06-06 13:37:23,085 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 09:37:36] 2025-06-06 13:37:23,086 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 09:37:36] 2025-06-06 13:37:23,086 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 09:37:36] 2025-06-06 13:37:23,086 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 09:37:36] 2025-06-06 13:37:23,086 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 09:37:36] 2025-06-06 13:37:23,086 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 09:37:36] 2025-06-06 13:37:23,086 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 09:37:36] 2025-06-06 13:37:23,086 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 09:37:36] 2025-06-06 13:37:23,086 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 09:37:36] 2025-06-06 13:37:23,086 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 09:37:36] 2025-06-06 13:37:23,086 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 09:37:36] 2025-06-06 13:37:23,086 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 09:37:36] 2025-06-06 13:37:23,086 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 09:37:36] 2025-06-06 13:37:23,086 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 09:37:36] 2025-06-06 13:37:23,086 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 09:37:36] 2025-06-06 13:37:23,087 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 09:37:36] 2025-06-06 13:37:23,087 | INFO     | job 6677443229 has completed (purged errors)
[2025-06-06 09:37:36] 2025-06-06 13:37:23,087 | INFO     | overall cleanup function is called
[2025-06-06 09:37:36] 2025-06-06 13:37:24,096 | INFO     | --- collectZombieJob: --- 10, [2777727]
[2025-06-06 09:37:36] 2025-06-06 13:37:24,096 | INFO     | zombie collector waiting for pid 2777727
[2025-06-06 09:37:36] 2025-06-06 13:37:24,096 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 09:37:36] 2025-06-06 13:37:24,096 | INFO     | collected zombie processes
[2025-06-06 09:37:36] 2025-06-06 13:37:24,096 | INFO     | will attempt to kill all subprocesses of pid=2777727
[2025-06-06 09:37:36] 2025-06-06 13:37:24,383 | INFO     | process IDs to be killed: [2777727] (in reverse order)
[2025-06-06 09:37:36] 2025-06-06 13:37:24,489 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 09:37:36] 2025-06-06 13:37:24,489 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 09:37:36] 2025-06-06 13:37:24,503 | INFO     | did not find any defunct processes belonging to 2777727
[2025-06-06 09:37:36] 2025-06-06 13:37:24,517 | INFO     | did not find any defunct processes belonging to 2777727
[2025-06-06 09:37:36] 2025-06-06 13:37:24,517 | INFO     | ready for new job
[2025-06-06 09:37:36] 2025-06-06 13:37:24,517 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 09:37:36] 2025-06-06 13:37:24,519 | INFO     | **************************************
[2025-06-06 09:37:36] 2025-06-06 13:37:24,519 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 09:37:36] 2025-06-06 13:37:24,519 | INFO     | **************************************
[2025-06-06 09:37:36] 2025-06-06 13:37:24,519 | INFO     | 
[2025-06-06 09:37:36] 2025-06-06 13:37:24,534 | INFO     | architecture information:
[2025-06-06 09:37:36] 2025-06-06 13:37:24,535 | INFO     | executing command: cat /etc/os-release
[2025-06-06 09:37:36] 2025-06-06 13:37:24,555 | INFO     | cat /etc/os-release:
[2025-06-06 09:37:36] NAME="CentOS Linux"
[2025-06-06 09:37:36] VERSION="7 (Core)"
[2025-06-06 09:37:36] ID="centos"
[2025-06-06 09:37:36] ID_LIKE="rhel fedora"
[2025-06-06 09:37:36] VERSION_ID="7"
[2025-06-06 09:37:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 09:37:36] ANSI_COLOR="0;31"
[2025-06-06 09:37:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 09:37:36] HOME_URL="https://www.centos.org/"
[2025-06-06 09:37:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 09:37:36] 
[2025-06-06 09:37:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 09:37:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 09:37:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 09:37:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 09:37:36] 
[2025-06-06 09:37:36] 2025-06-06 13:37:24,555 | INFO     | **************************************
[2025-06-06 09:37:36] 2025-06-06 13:37:25,058 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-06 09:37:36] 2025-06-06 13:37:25,079 | INFO     | sufficient remaining disk space (96208945152 B)
[2025-06-06 09:37:36] 2025-06-06 13:37:25,080 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 09:37:36] 2025-06-06 13:37:25,080 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 09:37:36] 2025-06-06 13:37:25,080 | INFO     | update_server=False
[2025-06-06 09:37:36] 2025-06-06 13:37:25,080 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 09:37:36] 2025-06-06 13:37:25,080 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 09:37:36] 2025-06-06 13:37:25,080 | INFO     | aborting loop
[2025-06-06 09:37:36] 2025-06-06 13:37:25,080 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 09:37:36] 2025-06-06 13:37:25,081 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 09:37:36] 2025-06-06 13:37:25,081 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 09:37:36] 2025-06-06 13:37:25,081 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 09:37:36] 2025-06-06 13:37:25,131 | INFO     | all data control threads have been joined
[2025-06-06 09:37:36] 2025-06-06 13:37:25,822 | INFO     | all job control threads have been joined
[2025-06-06 09:37:36] 2025-06-06 13:37:25,931 | INFO     | all payload control threads have been joined
[2025-06-06 09:37:36] 2025-06-06 13:37:26,076 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 09:37:36] 2025-06-06 13:37:26,086 | INFO     | [job] retrieve thread has finished
[2025-06-06 09:37:36] 2025-06-06 13:37:26,086 | INFO     | [job] job monitor thread has finished
[2025-06-06 09:37:36] 2025-06-06 13:37:26,137 | INFO     | [data] control thread has finished
[2025-06-06 09:37:36] 2025-06-06 13:37:26,243 | INFO     | [payload] validate_post thread has finished
[2025-06-06 09:37:36] 2025-06-06 13:37:26,827 | INFO     | [job] control thread has finished
[2025-06-06 09:37:36] 2025-06-06 13:37:26,854 | INFO     | [job] validate thread has finished
[2025-06-06 09:37:36] 2025-06-06 13:37:26,858 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 09:37:36] 2025-06-06 13:37:26,928 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 09:37:36] 2025-06-06 13:37:26,936 | INFO     | [payload] control thread has finished
[2025-06-06 09:37:36] 2025-06-06 13:37:26,959 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 09:37:36] 2025-06-06 13:37:27,025 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 09:37:36] 2025-06-06 13:37:27,061 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 09:37:36] 2025-06-06 13:37:27,293 | INFO     | [payload] failed_post thread has finished
[2025-06-06 09:37:36] 2025-06-06 13:37:27,344 | INFO     | [data] copytool_in thread has finished
[2025-06-06 09:37:36] 2025-06-06 13:37:27,938 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 09:37:36] 2025-06-06 13:37:28,081 | INFO     | [data] copytool_out thread has finished
[2025-06-06 09:37:36] 2025-06-06 13:37:28,943 | INFO     | [job] queue monitor thread has finished
[2025-06-06 09:37:36] 2025-06-06 13:37:30,967 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 09:37:36] 2025-06-06 13:37:31,230 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139827509909312)>', '<ExcThread(monitor, started 139826888177408)>']
[2025-06-06 09:37:36] 2025-06-06 13:37:32,117 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 09:37:36] 2025-06-06 13:37:32,117 | INFO     | [monitor] control thread has ended
[2025-06-06 09:37:36] 2025-06-06 13:37:36,255 | INFO     | all workflow threads have been joined
[2025-06-06 09:37:36] 2025-06-06 13:37:36,255 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 09:37:36] 2025-06-06 13:37:36,256 | INFO     | traces error code: 0
[2025-06-06 09:37:36] 2025-06-06 13:37:36,256 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 09:37:36] 2025-06-06 13:37:36,378 [wrapper] ==== pilot stdout END ====
[2025-06-06 09:37:36] 2025-06-06 13:37:36,381 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 09:37:36] 2025-06-06 13:37:36,383 [wrapper] pilotpid: 2762221
[2025-06-06 09:37:36] 2025-06-06 13:37:36,386 [wrapper] Pilot exit status: 0
[2025-06-06 09:37:36] 2025-06-06 13:37:36,397 [wrapper] pandaids: 6677443229
[2025-06-06 09:37:36] 2025-06-06 13:37:36,485 [wrapper] cleanup supervisor_pilot 3141521 2762222
[2025-06-06 09:37:36] 2025-06-06 13:37:36,488 [wrapper] Test setup, not cleaning
[2025-06-06 09:37:36] 2025-06-06 13:37:36,492 [wrapper] apfmon messages muted
[2025-06-06 09:37:36] 2025-06-06 13:37:36,495 [wrapper] ==== wrapper stdout END ====
[2025-06-06 09:37:36] 2025-06-06 13:37:36,498 [wrapper] ==== wrapper stderr END ====
[2025-06-06 09:37:36]  *** Error codes and diagnostics ***
[2025-06-06 09:37:36]     "exeErrorCode": 0,
[2025-06-06 09:37:36]     "exeErrorDiag": "",
[2025-06-06 09:37:36]     "pilotErrorCode": 0,
[2025-06-06 09:37:36]     "pilotErrorDiag": "",
[2025-06-06 09:37:36]  *** Listing of results directory ***
[2025-06-06 09:37:36] total 381116
[2025-06-06 09:37:36] -rw-r--r--. 1 boincer umatlas    495897 Jun  2 21:51 pilot3.tar.gz
[2025-06-06 09:37:36] -rw-r--r--. 1 boincer umatlas      5111 Jun  2 22:09 queuedata.json
[2025-06-06 09:37:36] -rwx------. 1 boincer umatlas     37140 Jun  2 22:09 runpilot2-wrapper.sh
[2025-06-06 09:37:36] -rw-r--r--. 1 boincer umatlas       100 Jun  6 08:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 09:37:36] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  6 08:36 run_atlas
[2025-06-06 09:37:36] -rw-r--r--. 1 boincer umatlas       105 Jun  6 08:36 job.xml
[2025-06-06 09:37:36] -rw-r--r--. 2 boincer umatlas 214968371 Jun  6 08:36 EVNT.45006593._000673.pool.root.1
[2025-06-06 09:37:36] -rw-r--r--. 2 boincer umatlas     15093 Jun  6 08:36 start_atlas.sh
[2025-06-06 09:37:36] drwxrwx--x. 2 boincer umatlas      4096 Jun  6 08:36 shared
[2025-06-06 09:37:36] -rw-r--r--. 2 boincer umatlas    508871 Jun  6 08:36 input.tar.gz
[2025-06-06 09:37:36] -rw-r--r--. 1 boincer umatlas         0 Jun  6 08:36 boinc_lockfile
[2025-06-06 09:37:36] -rw-r--r--. 1 boincer umatlas      2523 Jun  6 08:36 pandaJob.out
[2025-06-06 09:37:36] -rw-------. 1 boincer umatlas    985741 Jun  6 08:37 agis_schedconf.cvmfs.json
[2025-06-06 09:37:36] -rw-------. 1 boincer umatlas   1598969 Jun  6 08:37 agis_ddmendpoints.agis.ALL.json
[2025-06-06 09:37:36] drwx------. 4 boincer umatlas      4096 Jun  6 08:37 pilot3
[2025-06-06 09:37:36] -rw-------. 1 boincer umatlas 170164726 Jun  6 09:36 HITS.45006595._016805.pool.root.1
[2025-06-06 09:37:36] -rw-r--r--. 1 boincer umatlas      6898 Jun  6 09:36 init_data.xml
[2025-06-06 09:37:36] -rw-r--r--. 1 boincer umatlas       529 Jun  6 09:36 boinc_task_state.xml
[2025-06-06 09:37:36] -rw-------. 1 boincer umatlas      1030 Jun  6 09:37 memory_monitor_summary.json
[2025-06-06 09:37:36] -rw-------. 1 boincer umatlas    281829 Jun  6 09:37 log.45006595._016805.job.log.tgz.1
[2025-06-06 09:37:36] -rw-------. 1 boincer umatlas        95 Jun  6 09:37 pilot_heartbeat.json
[2025-06-06 09:37:36] -rw-------. 1 boincer umatlas      7688 Jun  6 09:37 heartbeat.json
[2025-06-06 09:37:36] -rw-r--r--. 1 boincer umatlas      8192 Jun  6 09:37 boinc_mmap_file
[2025-06-06 09:37:36] -rw-r--r--. 1 boincer umatlas        27 Jun  6 09:37 wrapper_checkpoint.txt
[2025-06-06 09:37:36] -rw-------. 1 boincer umatlas      4476 Jun  6 09:37 pilotlog.txt
[2025-06-06 09:37:36] -rw-------. 1 boincer umatlas    366504 Jun  6 09:37 log.45006595._016805.job.log.1
[2025-06-06 09:37:36] -rw-------. 1 boincer umatlas       357 Jun  6 09:37 output.list
[2025-06-06 09:37:36] -rw-r--r--. 1 boincer umatlas       620 Jun  6 09:37 runtime_log
[2025-06-06 09:37:36] -rw-------. 1 boincer umatlas    665600 Jun  6 09:37 result.tar.gz
[2025-06-06 09:37:36] -rw-r--r--. 1 boincer umatlas      8659 Jun  6 09:37 runtime_log.err
[2025-06-06 09:37:36] -rw-------. 1 boincer umatlas       652 Jun  6 09:37 RLUMDmhGWg7n9Rq4apOajLDm4fhM0noT9bVof3QYDm39WKDmomtWWm.diag
[2025-06-06 09:37:36] -rw-r--r--. 1 boincer umatlas     21141 Jun  6 09:37 stderr.txt
[2025-06-06 09:37:36] HITS file was successfully produced:
[2025-06-06 09:37:36] -rw-------. 1 boincer umatlas 170164726 Jun  6 09:36 shared/HITS.pool.root.1
[2025-06-06 09:37:36]  *** Contents of shared directory: ***
[2025-06-06 09:37:36] total 377288
[2025-06-06 09:37:36] -rw-r--r--. 2 boincer umatlas 214968371 Jun  6 08:36 ATLAS.root_0
[2025-06-06 09:37:36] -rw-r--r--. 2 boincer umatlas     15093 Jun  6 08:36 start_atlas.sh
[2025-06-06 09:37:36] -rw-r--r--. 2 boincer umatlas    508871 Jun  6 08:36 input.tar.gz
[2025-06-06 09:37:36] -rw-------. 1 boincer umatlas 170164726 Jun  6 09:36 HITS.pool.root.1
[2025-06-06 09:37:36] -rw-------. 1 boincer umatlas    665600 Jun  6 09:37 result.tar.gz
09:37:38 (2756729): run_atlas exited; CPU time 25583.500271
09:37:38 (2756729): called boinc_finish(0)

</stderr_txt>
]]>

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