Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:26:51 (3834): wrapper (7.7.26015): starting
08:26:51 (3834): wrapper: running run_atlas (--nthreads 8)
[2025-06-06 08:26:51] Arguments: --nthreads 8
[2025-06-06 08:26:51] Threads: 8
[2025-06-06 08:26:51] Checking for CVMFS
[2025-06-06 08:26:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 08:26:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 08:26:51] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 08:26:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 08:26:51] 2.11.2.0 2913 38513 75676 146857 3 1 16721397 20275201 1 130560 0 11783982 99.976 6566350 8087 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-06 08:26:51] CVMFS is ok
[2025-06-06 08:26:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 08:26:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 08:26:51] Further information can be found at the LHC@home message board.
[2025-06-06 08:26:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 08:26:51] Checking for apptainer binary...
[2025-06-06 08:26:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 08:26:51] Running /usr/bin/apptainer --version
[2025-06-06 08:26:51] apptainer version 1.3.2-1.el7
[2025-06-06 08:26:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 08:26:53] c-115-3.aglt2.org
[2025-06-06 08:26:53] apptainer works
[2025-06-06 08:26:53] Set ATHENA_PROC_NUMBER=8
[2025-06-06 08:26:53] Set ATHENA_CORE_NUMBER=8
[2025-06-06 08:26:53] Starting ATLAS job with PandaID=6668313102
[2025-06-06 08:26:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
10:28:28 (26605): wrapper (7.7.26015): starting
10:28:28 (26605): wrapper: running run_atlas (--nthreads 8)
[2025-06-06 10:28:28] Arguments: --nthreads 8
[2025-06-06 10:28:28] Threads: 8
[2025-06-06 10:28:28] This job has been restarted, cleaning up previous attempt
[2025-06-06 10:28:28] Checking for CVMFS
[2025-06-06 10:28:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 10:28:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 10:28:28] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 10:28:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 10:28:28] 2.11.2.0 2913 38635 74852 146863 3 1 16880229 20275200 1 130560 0 11863550 99.976 6641689 8165 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-06 10:28:28] CVMFS is ok
[2025-06-06 10:28:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 10:28:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 10:28:28] Further information can be found at the LHC@home message board.
[2025-06-06 10:28:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 10:28:28] Checking for apptainer binary...
[2025-06-06 10:28:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 10:28:28] Running /usr/bin/apptainer --version
[2025-06-06 10:28:28] apptainer version 1.3.2-1.el7
[2025-06-06 10:28:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 10:28:30] c-115-3.aglt2.org
[2025-06-06 10:28:30] apptainer works
[2025-06-06 10:28:30] Set ATHENA_PROC_NUMBER=8
[2025-06-06 10:28:30] Set ATHENA_CORE_NUMBER=8
[2025-06-06 10:28:30] Starting ATLAS job with PandaID=6668313102
[2025-06-06 10:28:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 12:56:29]  *** The last 200 lines of the pilot log: ***
[2025-06-06 12:56:29] 2025-06-06 16:55:58,001 | INFO     | extracted standard info from prmon json
[2025-06-06 12:56:29] 2025-06-06 16:55:58,002 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 12:56:29] 2025-06-06 16:55:58,002 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 12:56:29] 2025-06-06 16:55:58,002 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 12:56:29] 2025-06-06 16:55:58,003 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 12:56:29] 2025-06-06 16:55:58,005 | INFO     | fitting pss+swap vs Time
[2025-06-06 12:56:29] 2025-06-06 16:55:58,006 | INFO     | sum of square deviations: 945282840.0
[2025-06-06 12:56:29] 2025-06-06 16:55:58,006 | INFO     | sum of deviations: 5894170140.000002
[2025-06-06 12:56:29] 2025-06-06 16:55:58,007 | INFO     | mean x: 1749224551.0
[2025-06-06 12:56:29] 2025-06-06 16:55:58,007 | INFO     | mean y: 2463254.8068965515
[2025-06-06 12:56:29] 2025-06-06 16:55:58,007 | INFO     | -- intersect: -10904565499.316166
[2025-06-06 12:56:29] 2025-06-06 16:55:58,007 | INFO     | intersect: -10904565499.316166
[2025-06-06 12:56:29] 2025-06-06 16:55:58,007 | INFO     | chi2: 2.50547426667132
[2025-06-06 12:56:29] 2025-06-06 16:55:58,008 | INFO     | sum of square deviations: 850825255.0
[2025-06-06 12:56:29] 2025-06-06 16:55:58,008 | INFO     | sum of deviations: 16164104245.5
[2025-06-06 12:56:29] 2025-06-06 16:55:58,008 | INFO     | mean x: 1749224398.5
[2025-06-06 12:56:29] 2025-06-06 16:55:58,008 | INFO     | mean y: 2479346.2214285713
[2025-06-06 12:56:29] 2025-06-06 16:55:58,009 | INFO     | -- intersect: -33229544926.64296
[2025-06-06 12:56:29] 2025-06-06 16:55:58,009 | INFO     | intersect: -33229544926.64296
[2025-06-06 12:56:29] 2025-06-06 16:55:58,009 | INFO     | chi2: 1.5188155430915025
[2025-06-06 12:56:29] 2025-06-06 16:55:58,009 | INFO     | current chi2=1.5188155430915025 (change=39.38011803612159 %)
[2025-06-06 12:56:29] 2025-06-06 16:55:58,009 | INFO     | sum of square deviations: 762879420.0
[2025-06-06 12:56:29] 2025-06-06 16:55:58,010 | INFO     | sum of deviations: 15386579671.000002
[2025-06-06 12:56:29] 2025-06-06 16:55:58,010 | INFO     | mean x: 1749224246.0
[2025-06-06 12:56:29] 2025-06-06 16:55:58,010 | INFO     | mean y: 2477997.3777777776
[2025-06-06 12:56:29] 2025-06-06 16:55:58,010 | INFO     | -- intersect: -35277774055.46159
[2025-06-06 12:56:29] 2025-06-06 16:55:58,010 | INFO     | intersect: -35277774055.46159
[2025-06-06 12:56:29] 2025-06-06 16:55:58,011 | INFO     | chi2: 1.5209628092790157
[2025-06-06 12:56:29] 2025-06-06 16:55:58,011 | INFO     | current chi2=1.5209628092790157 (change=-0.14137768060646583 %)
[2025-06-06 12:56:29] 2025-06-06 16:55:58,011 | INFO     | right removable region: 134
[2025-06-06 12:56:29] 2025-06-06 16:55:58,011 | INFO     | sum of square deviations: 850825255.0
[2025-06-06 12:56:29] 2025-06-06 16:55:58,012 | INFO     | sum of deviations: -14836815798.500002
[2025-06-06 12:56:29] 2025-06-06 16:55:58,012 | INFO     | mean x: 1749224703.5
[2025-06-06 12:56:29] 2025-06-06 16:55:58,012 | INFO     | mean y: 2496152.3785714284
[2025-06-06 12:56:29] 2025-06-06 16:55:58,012 | INFO     | -- intersect: 30505733525.151764
[2025-06-06 12:56:29] 2025-06-06 16:55:58,012 | INFO     | intersect: 30505733525.151764
[2025-06-06 12:56:29] 2025-06-06 16:55:58,012 | INFO     | chi2: 1.1086879660352362
[2025-06-06 12:56:29] 2025-06-06 16:55:58,013 | INFO     | current chi2=1.1086879660352362 (change=55.749377242329544 %)
[2025-06-06 12:56:29] 2025-06-06 16:55:58,013 | INFO     | sum of square deviations: 762879420.0
[2025-06-06 12:56:29] 2025-06-06 16:55:58,013 | INFO     | sum of deviations: -11448165179.0
[2025-06-06 12:56:29] 2025-06-06 16:55:58,014 | INFO     | mean x: 1749224856.0
[2025-06-06 12:56:29] 2025-06-06 16:55:58,014 | INFO     | mean y: 2490200.1481481483
[2025-06-06 12:56:29] 2025-06-06 16:55:58,014 | INFO     | -- intersect: 26252267768.797844
[2025-06-06 12:56:29] 2025-06-06 16:55:58,014 | INFO     | intersect: 26252267768.797844
[2025-06-06 12:56:29] 2025-06-06 16:55:58,014 | INFO     | chi2: 1.0854123036363805
[2025-06-06 12:56:29] 2025-06-06 16:55:58,014 | INFO     | current chi2=1.0854123036363805 (change=2.0993880254776713 %)
[2025-06-06 12:56:29] 2025-06-06 16:55:58,014 | INFO     | left removable region: 20
[2025-06-06 12:56:29] 2025-06-06 16:55:58,015 | INFO     | sum of square deviations: 459366752.5
[2025-06-06 12:56:29] 2025-06-06 16:55:58,015 | INFO     | sum of deviations: 2860130241.0
[2025-06-06 12:56:29] 2025-06-06 16:55:58,015 | INFO     | mean x: 1749224825.5
[2025-06-06 12:56:29] 2025-06-06 16:55:58,015 | INFO     | mean y: 2498651.8245614036
[2025-06-06 12:56:29] 2025-06-06 16:55:58,015 | INFO     | -- intersect: -10888604795.459639
[2025-06-06 12:56:29] 2025-06-06 16:55:58,016 | INFO     | intersect: -10888604795.459639
[2025-06-06 12:56:29] 2025-06-06 16:55:58,016 | INFO     | chi2: 0.00011196198949069505
[2025-06-06 12:56:29] 2025-06-06 16:55:58,016 | INFO     | -- intersect: -10888604795.459639
[2025-06-06 12:56:29] 2025-06-06 16:55:58,016 | INFO     | current memory leak: 6.23 B/s (using 114 data points, chi2=0.00)
[2025-06-06 12:56:29] 2025-06-06 16:55:58,016 | INFO     | could have reported an average CPU frequency of 2149 MHz (8 samples)
[2025-06-06 12:56:29] 2025-06-06 16:55:58,017 | INFO     | ..............................
[2025-06-06 12:56:29] 2025-06-06 16:55:58,017 | INFO     | . Timing measurements:
[2025-06-06 12:56:29] 2025-06-06 16:55:58,017 | INFO     | . get job = 0 s
[2025-06-06 12:56:29] 2025-06-06 16:55:58,017 | INFO     | . initial setup = 1 s
[2025-06-06 12:56:29] 2025-06-06 16:55:58,017 | INFO     | . payload setup = 12 s
[2025-06-06 12:56:29] 2025-06-06 16:55:58,017 | INFO     | . stage-in = 0 s
[2025-06-06 12:56:29] 2025-06-06 16:55:58,017 | INFO     | . payload execution = 8788 s
[2025-06-06 12:56:29] 2025-06-06 16:55:58,017 | INFO     | . stage-out = 1 s
[2025-06-06 12:56:29] 2025-06-06 16:55:58,017 | INFO     | . log creation = 0 s
[2025-06-06 12:56:29] 2025-06-06 16:55:58,017 | INFO     | ..............................
[2025-06-06 12:56:29] 2025-06-06 16:55:58,102 | INFO     | 
[2025-06-06 12:56:29] 2025-06-06 16:55:58,102 | INFO     | job summary report
[2025-06-06 12:56:29] 2025-06-06 16:55:58,103 | INFO     | --------------------------------------------------
[2025-06-06 12:56:29] 2025-06-06 16:55:58,103 | INFO     | PanDA job id: 6668313102
[2025-06-06 12:56:29] 2025-06-06 16:55:58,103 | INFO     | task id: 44871837
[2025-06-06 12:56:29] 2025-06-06 16:55:58,103 | INFO     | errors: (none)
[2025-06-06 12:56:29] 2025-06-06 16:55:58,103 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 12:56:29] 2025-06-06 16:55:58,104 | INFO     | pilot state: finished 
[2025-06-06 12:56:29] 2025-06-06 16:55:58,104 | INFO     | transexitcode: 0
[2025-06-06 12:56:29] 2025-06-06 16:55:58,104 | INFO     | exeerrorcode: 0
[2025-06-06 12:56:29] 2025-06-06 16:55:58,104 | INFO     | exeerrordiag: 
[2025-06-06 12:56:29] 2025-06-06 16:55:58,104 | INFO     | exitcode: 0
[2025-06-06 12:56:29] 2025-06-06 16:55:58,104 | INFO     | exitmsg: OK
[2025-06-06 12:56:29] 2025-06-06 16:55:58,104 | INFO     | cpuconsumptiontime: 66240 s
[2025-06-06 12:56:29] 2025-06-06 16:55:58,105 | INFO     | nevents: 400
[2025-06-06 12:56:29] 2025-06-06 16:55:58,105 | INFO     | neventsw: 0
[2025-06-06 12:56:29] 2025-06-06 16:55:58,105 | INFO     | pid: 4548
[2025-06-06 12:56:29] 2025-06-06 16:55:58,105 | INFO     | pgrp: 4548
[2025-06-06 12:56:29] 2025-06-06 16:55:58,105 | INFO     | corecount: 8
[2025-06-06 12:56:29] 2025-06-06 16:55:58,105 | INFO     | event service: False
[2025-06-06 12:56:29] 2025-06-06 16:55:58,106 | INFO     | sizes: {0: 2396904, 1: 2397760, 7: 2398022, 12: 2398050, 8805: 2426017, 8808: 2435142, 8816: 2435280}
[2025-06-06 12:56:29] 2025-06-06 16:55:58,106 | INFO     | --------------------------------------------------
[2025-06-06 12:56:29] 2025-06-06 16:55:58,106 | INFO     | 
[2025-06-06 12:56:29] 2025-06-06 16:55:58,106 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-06 12:56:29] 2025-06-06 16:55:58,134 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 12:56:29] 2025-06-06 16:55:58,134 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 12:56:29] 2025-06-06 16:55:58,135 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 12:56:29] 2025-06-06 16:55:58,135 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 12:56:29] 2025-06-06 16:55:58,135 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 12:56:29] 2025-06-06 16:55:58,135 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 12:56:29] 2025-06-06 16:55:58,135 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 12:56:29] 2025-06-06 16:55:58,136 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 12:56:29] 2025-06-06 16:55:58,136 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 12:56:29] 2025-06-06 16:55:58,136 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 12:56:29] 2025-06-06 16:55:58,136 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 12:56:29] 2025-06-06 16:55:58,136 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 12:56:29] 2025-06-06 16:55:58,136 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 12:56:29] 2025-06-06 16:55:58,137 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 12:56:29] 2025-06-06 16:55:58,137 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 12:56:29] 2025-06-06 16:55:58,137 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 12:56:29] 2025-06-06 16:55:58,137 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 12:56:29] 2025-06-06 16:55:58,137 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 12:56:29] 2025-06-06 16:55:58,137 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 12:56:29] 2025-06-06 16:55:58,138 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 12:56:29] 2025-06-06 16:55:58,138 | INFO     | job 6668313102 has completed (purged errors)
[2025-06-06 12:56:29] 2025-06-06 16:55:58,138 | INFO     | overall cleanup function is called
[2025-06-06 12:56:29] 2025-06-06 16:55:59,146 | INFO     | --- collectZombieJob: --- 10, [4548]
[2025-06-06 12:56:29] 2025-06-06 16:55:59,147 | INFO     | zombie collector waiting for pid 4548
[2025-06-06 12:56:29] 2025-06-06 16:55:59,147 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 12:56:29] 2025-06-06 16:55:59,147 | INFO     | collected zombie processes
[2025-06-06 12:56:29] 2025-06-06 16:55:59,147 | INFO     | will attempt to kill all subprocesses of pid=4548
[2025-06-06 12:56:29] 2025-06-06 16:55:59,230 | INFO     | process IDs to be killed: [4548] (in reverse order)
[2025-06-06 12:56:29] 2025-06-06 16:55:59,291 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 12:56:29] 2025-06-06 16:55:59,292 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 12:56:29] 2025-06-06 16:55:59,295 | INFO     | did not find any defunct processes belonging to 4548
[2025-06-06 12:56:29] 2025-06-06 16:55:59,298 | INFO     | did not find any defunct processes belonging to 4548
[2025-06-06 12:56:29] 2025-06-06 16:55:59,299 | INFO     | ready for new job
[2025-06-06 12:56:29] 2025-06-06 16:55:59,299 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 12:56:29] 2025-06-06 16:55:59,300 | INFO     | ***************************************
[2025-06-06 12:56:29] 2025-06-06 16:55:59,300 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-06 12:56:29] 2025-06-06 16:55:59,301 | INFO     | ***************************************
[2025-06-06 12:56:29] 2025-06-06 16:55:59,301 | INFO     | 
[2025-06-06 12:56:29] 2025-06-06 16:55:59,301 | INFO     | architecture information:
[2025-06-06 12:56:29] 2025-06-06 16:55:59,302 | INFO     | executing command: cat /etc/os-release
[2025-06-06 12:56:29] 2025-06-06 16:55:59,320 | INFO     | cat /etc/os-release:
[2025-06-06 12:56:29] NAME="CentOS Linux"
[2025-06-06 12:56:29] VERSION="7 (Core)"
[2025-06-06 12:56:29] ID="centos"
[2025-06-06 12:56:29] ID_LIKE="rhel fedora"
[2025-06-06 12:56:29] VERSION_ID="7"
[2025-06-06 12:56:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 12:56:29] ANSI_COLOR="0;31"
[2025-06-06 12:56:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 12:56:29] HOME_URL="https://www.centos.org/"
[2025-06-06 12:56:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 12:56:29] 
[2025-06-06 12:56:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 12:56:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 12:56:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 12:56:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 12:56:29] 
[2025-06-06 12:56:29] 2025-06-06 16:55:59,321 | INFO     | ***************************************
[2025-06-06 12:56:29] 2025-06-06 16:55:59,824 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-06 12:56:29] 2025-06-06 16:55:59,844 | INFO     | sufficient remaining disk space (18608029696 B)
[2025-06-06 12:56:29] 2025-06-06 16:55:59,844 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 12:56:29] 2025-06-06 16:55:59,845 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 12:56:29] 2025-06-06 16:55:59,845 | INFO     | update_server=False
[2025-06-06 12:56:29] 2025-06-06 16:55:59,845 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 12:56:29] 2025-06-06 16:55:59,845 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 12:56:29] 2025-06-06 16:55:59,941 | INFO     | all data control threads have been joined
[2025-06-06 12:56:29] 2025-06-06 16:56:00,451 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 12:56:29] 2025-06-06 16:56:00,452 | INFO     | aborting loop
[2025-06-06 12:56:29] 2025-06-06 16:56:00,546 | INFO     | all payload control threads have been joined
[2025-06-06 12:56:29] 2025-06-06 16:56:00,625 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 12:56:29] 2025-06-06 16:56:00,705 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 12:56:29] 2025-06-06 16:56:00,851 | INFO     | [job] retrieve thread has finished
[2025-06-06 12:56:29] 2025-06-06 16:56:00,851 | INFO     | [job] queue monitor thread has finished
[2025-06-06 12:56:29] 2025-06-06 16:56:00,946 | INFO     | [data] control thread has finished
[2025-06-06 12:56:29] 2025-06-06 16:56:00,987 | INFO     | all job control threads have been joined
[2025-06-06 12:56:29] 2025-06-06 16:56:01,011 | INFO     | [job] validate thread has finished
[2025-06-06 12:56:29] 2025-06-06 16:56:01,068 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 12:56:29] 2025-06-06 16:56:01,143 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 12:56:29] 2025-06-06 16:56:01,147 | INFO     | [data] copytool_in thread has finished
[2025-06-06 12:56:29] 2025-06-06 16:56:01,153 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 12:56:29] 2025-06-06 16:56:01,226 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 12:56:29] 2025-06-06 16:56:01,457 | INFO     | [job] job monitor thread has finished
[2025-06-06 12:56:29] 2025-06-06 16:56:01,459 | INFO     | [payload] failed_post thread has finished
[2025-06-06 12:56:29] 2025-06-06 16:56:01,552 | INFO     | [payload] control thread has finished
[2025-06-06 12:56:29] 2025-06-06 16:56:01,992 | INFO     | [job] control thread has finished
[2025-06-06 12:56:29] 2025-06-06 16:56:02,041 | INFO     | [payload] validate_post thread has finished
[2025-06-06 12:56:29] 2025-06-06 16:56:02,631 | INFO     | [data] copytool_out thread has finished
[2025-06-06 12:56:29] 2025-06-06 16:56:04,711 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 12:56:29] 2025-06-06 16:56:06,290 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139944494790464)>', '<ExcThread(monitor, started 139943741462272)>']
[2025-06-06 12:56:29] 2025-06-06 16:56:11,313 | INFO     | all workflow threads have been joined
[2025-06-06 12:56:29] 2025-06-06 16:56:11,314 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 12:56:29] 2025-06-06 16:56:11,314 | INFO     | traces error code: 0
[2025-06-06 12:56:29] 2025-06-06 16:56:11,314 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 12:56:29] 2025-06-06 16:56:29,319 | INFO     | PID=30365 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-06 12:56:29] 2025-06-06 16:56:29,320 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 12:56:29] 2025-06-06 16:56:29,320 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 12:56:29] 2025-06-06 16:56:29,321 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 12:56:29] 2025-06-06 16:56:29,321 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 12:56:29] 2025-06-06 16:56:29,321 | INFO     | [monitor] control thread has ended
[2025-06-06 12:56:29] 2025-06-06 16:56:29,409 [wrapper] ==== pilot stdout END ====
[2025-06-06 12:56:29] 2025-06-06 16:56:29,414 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 12:56:29] 2025-06-06 16:56:29,418 [wrapper] pilotpid: 30365
[2025-06-06 12:56:29] 2025-06-06 16:56:29,423 [wrapper] Pilot exit status: 0
[2025-06-06 12:56:29] 2025-06-06 16:56:29,441 [wrapper] pandaids: 6668313102 6668313102
[2025-06-06 12:56:29] 2025-06-06 16:56:29,484 [wrapper] cleanup supervisor_pilot 18532 30366
[2025-06-06 12:56:29] 2025-06-06 16:56:29,489 [wrapper] Test setup, not cleaning
[2025-06-06 12:56:29] 2025-06-06 16:56:29,494 [wrapper] apfmon messages muted
[2025-06-06 12:56:29] 2025-06-06 16:56:29,499 [wrapper] ==== wrapper stdout END ====
[2025-06-06 12:56:29] 2025-06-06 16:56:29,503 [wrapper] ==== wrapper stderr END ====
[2025-06-06 12:56:29]  *** Error codes and diagnostics ***
[2025-06-06 12:56:29]     "exeErrorCode": 0,
[2025-06-06 12:56:29]     "exeErrorDiag": "",
[2025-06-06 12:56:29]     "pilotErrorCode": 0,
[2025-06-06 12:56:29]     "pilotErrorDiag": "",
[2025-06-06 12:56:29]  *** Listing of results directory ***
[2025-06-06 12:56:29] total 636272
[2025-06-06 12:56:29] drwx------ 4 boincer umatlas      4096 Jun  2 05:00 pilot3
[2025-06-06 12:56:29] -rw-r--r-- 1 boincer umatlas    529402 Jun  6 07:19 pilot3.tar.gz
[2025-06-06 12:56:29] -rwx------ 1 boincer umatlas     37140 Jun  6 08:26 runpilot2-wrapper.sh
[2025-06-06 12:56:29] -rw-r--r-- 1 boincer umatlas      5112 Jun  6 08:26 queuedata.json
[2025-06-06 12:56:29] -rw-r--r-- 1 boincer umatlas       100 Jun  6 08:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 12:56:29] -rwxr-xr-x 1 boincer umatlas      7986 Jun  6 08:26 run_atlas
[2025-06-06 12:56:29] -rw-r--r-- 1 boincer umatlas       105 Jun  6 08:26 job.xml
[2025-06-06 12:56:29] -rw-r--r-- 3 boincer umatlas 223537997 Jun  6 08:26 EVNT.44871834._003208.pool.root.1
[2025-06-06 12:56:29] -rw-r--r-- 3 boincer umatlas 223537997 Jun  6 08:26 ATLAS.root_0
[2025-06-06 12:56:29] -rw-r--r-- 2 boincer umatlas     15095 Jun  6 08:26 start_atlas.sh
[2025-06-06 12:56:29] drwxrwx--x 2 boincer umatlas      4096 Jun  6 08:26 shared
[2025-06-06 12:56:29] -rw-r--r-- 2 boincer umatlas    541913 Jun  6 08:26 input.tar.gz
[2025-06-06 12:56:29] -rw-r--r-- 1 boincer umatlas         0 Jun  6 08:26 boinc_lockfile
[2025-06-06 12:56:29] -rw-r--r-- 1 boincer umatlas      2558 Jun  6 10:28 pandaJob.out
[2025-06-06 12:56:29] -rw------- 1 boincer umatlas    985728 Jun  6 10:28 agis_schedconf.cvmfs.json
[2025-06-06 12:56:29] -rw------- 1 boincer umatlas 198287807 Jun  6 12:55 HITS.44871837._082192.pool.root.1
[2025-06-06 12:56:29] -rw-r--r-- 1 boincer umatlas       532 Jun  6 12:55 boinc_task_state.xml
[2025-06-06 12:56:29] -rw------- 1 boincer umatlas        96 Jun  6 12:55 pilot_heartbeat.json
[2025-06-06 12:56:29] -rw------- 1 boincer umatlas      1049 Jun  6 12:55 memory_monitor_summary.json
[2025-06-06 12:56:29] -rw------- 1 boincer umatlas   1598969 Jun  6 12:55 agis_ddmendpoints.agis.ALL.json
[2025-06-06 12:56:29] -rw------- 1 boincer umatlas    336375 Jun  6 12:55 log.44871837._082192.job.log.tgz.1
[2025-06-06 12:56:29] -rw------- 1 boincer umatlas      7771 Jun  6 12:55 heartbeat.json
[2025-06-06 12:56:29] -rw-r--r-- 1 boincer umatlas      5826 Jun  6 12:56 init_data.xml
[2025-06-06 12:56:29] -rw-r--r-- 1 boincer umatlas      8192 Jun  6 12:56 boinc_mmap_file
[2025-06-06 12:56:29] -rw-r--r-- 1 boincer umatlas        29 Jun  6 12:56 wrapper_checkpoint.txt
[2025-06-06 12:56:29] -rw------- 1 boincer umatlas       745 Jun  6 12:56 pilotlog.txt
[2025-06-06 12:56:29] -rw------- 1 boincer umatlas    800603 Jun  6 12:56 log.44871837._082192.job.log.1
[2025-06-06 12:56:29] -rw------- 1 boincer umatlas       357 Jun  6 12:56 output.list
[2025-06-06 12:56:29] -rw-r--r-- 1 boincer umatlas       620 Jun  6 12:56 runtime_log
[2025-06-06 12:56:29] -rw------- 1 boincer umatlas   1157120 Jun  6 12:56 result.tar.gz
[2025-06-06 12:56:29] -rw------- 1 boincer umatlas       785 Jun  6 12:56 y44MDmWKlh7n9Rq4apOajLDm4fhM0noT9bVof3QYDmx5aKDmlpEYam.diag
[2025-06-06 12:56:29] -rw-r--r-- 1 boincer umatlas      8740 Jun  6 12:56 runtime_log.err
[2025-06-06 12:56:29] -rw-r--r-- 1 boincer umatlas     23005 Jun  6 12:56 stderr.txt
[2025-06-06 12:56:29] HITS file was successfully produced:
[2025-06-06 12:56:29] -rw------- 1 boincer umatlas 198287807 Jun  6 12:55 shared/HITS.pool.root.1
[2025-06-06 12:56:29]  *** Contents of shared directory: ***
[2025-06-06 12:56:29] total 413632
[2025-06-06 12:56:29] -rw-r--r-- 3 boincer umatlas 223537997 Jun  6 08:26 ATLAS.root_0
[2025-06-06 12:56:29] -rw-r--r-- 2 boincer umatlas     15095 Jun  6 08:26 start_atlas.sh
[2025-06-06 12:56:29] -rw-r--r-- 2 boincer umatlas    541913 Jun  6 08:26 input.tar.gz
[2025-06-06 12:56:29] -rw------- 1 boincer umatlas 198287807 Jun  6 12:55 HITS.pool.root.1
[2025-06-06 12:56:29] -rw------- 1 boincer umatlas   1157120 Jun  6 12:56 result.tar.gz
12:56:31 (26605): run_atlas exited; CPU time 66192.833045
12:56:31 (26605): called boinc_finish(0)

</stderr_txt>
]]>

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