Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:05:29 (304829): wrapper (7.7.26015): starting
06:05:29 (304829): wrapper: running run_atlas (--nthreads 8)
[2025-06-06 06:05:29] Arguments: --nthreads 8
[2025-06-06 06:05:29] Threads: 8
[2025-06-06 06:05:29] Checking for CVMFS
[2025-06-06 06:05:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 06:05:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 06:05:29] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 06:05:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 06:05:29] 2.12.6.0 4471 40051 562236 146847 1 862 18768783 32935937 12196 16776704 0 167295898 99.559 202011711 27912 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-06 06:05:29] CVMFS is ok
[2025-06-06 06:05:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 06:05:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 06:05:29] Further information can be found at the LHC@home message board.
[2025-06-06 06:05:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 06:05:29] Checking for apptainer binary...
[2025-06-06 06:05:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 06:05:29] Running /usr/bin/apptainer --version
[2025-06-06 06:05:29] apptainer version 1.4.1-1.el9
[2025-06-06 06:05:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 06:05:29] c7-11-13.aglt2.org
[2025-06-06 06:05:29] apptainer works
[2025-06-06 06:05:29] Set ATHENA_PROC_NUMBER=8
[2025-06-06 06:05:29] Set ATHENA_CORE_NUMBER=8
[2025-06-06 06:05:29] Starting ATLAS job with PandaID=6681927997
[2025-06-06 06:05:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 07:13:51]  *** The last 200 lines of the pilot log: ***
[2025-06-06 07:13:51]  is_tar=False
[2025-06-06 07:13:51]  lfn=log.45006595._057144.job.log.tgz.1
[2025-06-06 07:13:51]  mtime=0
[2025-06-06 07:13:51]  protocol_id=None
[2025-06-06 07:13:51]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 07:13:51]  replicas=None
[2025-06-06 07:13:51]  scope=mc23_13p6TeV
[2025-06-06 07:13:51]  status=None
[2025-06-06 07:13:51]  status_code=0
[2025-06-06 07:13:51]  storage_token=
[2025-06-06 07:13:51]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6681927997/log.45006595._057144.job.log.tgz.1
[2025-06-06 07:13:51]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3b/80/log.45006595._057144.job.log.tgz.1
[2025-06-06 07:13:51]  workdir=None
[2025-06-06 07:13:51] ]
[2025-06-06 07:13:51] 2025-06-06 11:13:11,004 | INFO     | transferring file log.45006595._057144.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6681927997/log.45006595._057144.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-06 07:13:51] 2025-06-06 11:13:11,004 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6681927997/log.45006595._057144.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._057144.job
[2025-06-06 07:13:51] 2025-06-06 11:13:11,027 | INFO     | adding to output.list: log.45006595._057144.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3b/80/log.45006595._057144.job.log.tg
[2025-06-06 07:13:51] 2025-06-06 11:13:11,027 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 07:13:51] 2025-06-06 11:13:11,027 | INFO     | summary of transferred files:
[2025-06-06 07:13:51] 2025-06-06 11:13:11,028 | INFO     |  -- lfn=log.45006595._057144.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 07:13:51] 2025-06-06 11:13:11,028 | INFO     | stage-out finished correctly
[2025-06-06 07:13:51] 2025-06-06 11:13:12,606 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 07:13:51] 2025-06-06 11:13:13,461 | INFO     | monitor loop #299: job 0:6681927997 is in state 'finished'
[2025-06-06 07:13:51] 2025-06-06 11:13:13,462 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 07:13:51] 2025-06-06 11:13:14,678 | INFO     | job 6681927997 has state=finished
[2025-06-06 07:13:51] 2025-06-06 11:13:14,678 | INFO     | preparing for final server update for job 6681927997 in state='finished'
[2025-06-06 07:13:51] 2025-06-06 11:13:14,680 | INFO     | this job has now completed (state=finished)
[2025-06-06 07:13:51] 2025-06-06 11:13:14,680 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 07:13:51] 2025-06-06 11:13:14,680 | INFO     | log transfer has been attempted: DONE
[2025-06-06 07:13:51] 2025-06-06 11:13:14,680 | INFO     | job 6681927997 has finished - writing final server update
[2025-06-06 07:13:51] 2025-06-06 11:13:14,680 | INFO     | total number of processed events: 400 (read)
[2025-06-06 07:13:51] 2025-06-06 11:13:14,681 | INFO     | executing command: lscpu
[2025-06-06 07:13:51] 2025-06-06 11:13:14,744 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 07:13:51] 2025-06-06 11:13:15,964 | INFO     | monitor loop #300: job 0:6681927997 is in state 'finished'
[2025-06-06 07:13:51] 2025-06-06 11:13:15,964 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 07:13:51] 2025-06-06 11:13:18,468 | INFO     | monitor loop #301: job 0:6681927997 is in state 'finished'
[2025-06-06 07:13:51] 2025-06-06 11:13:18,468 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 07:13:51] 2025-06-06 11:13:18,977 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 07:13:51] 2025-06-06 11:13:18,984 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3266.631328125001
[2025-06-06 07:13:51] 2025-06-06 11:13:19,002 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6681927997/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 07:13:51] 2025-06-06 11:13:19,007 | INFO     | extracted standard info from prmon json
[2025-06-06 07:13:51] 2025-06-06 11:13:19,007 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 07:13:51] 2025-06-06 11:13:19,007 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 07:13:51] 2025-06-06 11:13:19,008 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 07:13:51] 2025-06-06 11:13:19,008 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 07:13:51] 2025-06-06 11:13:19,009 | INFO     | fitting pss+swap vs Time
[2025-06-06 07:13:51] 2025-06-06 11:13:19,009 | INFO     | sum of square deviations: 63667896.98305084
[2025-06-06 07:13:51] 2025-06-06 11:13:19,009 | INFO     | sum of deviations: -4869624501.38983
[2025-06-06 07:13:51] 2025-06-06 11:13:19,010 | INFO     | mean x: 1749206446.0169492
[2025-06-06 07:13:51] 2025-06-06 11:13:19,010 | INFO     | mean y: 2264234.3898305083
[2025-06-06 07:13:51] 2025-06-06 11:13:19,010 | INFO     | -- intersect: 133789918156.44022
[2025-06-06 07:13:51] 2025-06-06 11:13:19,010 | INFO     | intersect: 133789918156.44022
[2025-06-06 07:13:51] 2025-06-06 11:13:19,010 | INFO     | chi2: 0.13450276611135303
[2025-06-06 07:13:51] 2025-06-06 11:13:19,010 | INFO     | -- intersect: 133789918156.44022
[2025-06-06 07:13:51] 2025-06-06 11:13:19,010 | INFO     | current memory leak: -76.48 B/s (using 59 data points, chi2=0.13)
[2025-06-06 07:13:51] 2025-06-06 11:13:19,010 | INFO     | could have reported an average CPU frequency of 3272 MHz (6 samples)
[2025-06-06 07:13:51] 2025-06-06 11:13:19,011 | INFO     | ..............................
[2025-06-06 07:13:51] 2025-06-06 11:13:19,011 | INFO     | . Timing measurements:
[2025-06-06 07:13:51] 2025-06-06 11:13:19,011 | INFO     | . get job = 0 s
[2025-06-06 07:13:51] 2025-06-06 11:13:19,011 | INFO     | . initial setup = 3 s
[2025-06-06 07:13:51] 2025-06-06 11:13:19,011 | INFO     | . payload setup = 8 s
[2025-06-06 07:13:51] 2025-06-06 11:13:19,011 | INFO     | . stage-in = 0 s
[2025-06-06 07:13:51] 2025-06-06 11:13:19,011 | INFO     | . payload execution = 4019 s
[2025-06-06 07:13:51] 2025-06-06 11:13:19,011 | INFO     | . stage-out = 0 s
[2025-06-06 07:13:51] 2025-06-06 11:13:19,011 | INFO     | . log creation = 0 s
[2025-06-06 07:13:51] 2025-06-06 11:13:19,011 | INFO     | ..............................
[2025-06-06 07:13:51] 2025-06-06 11:13:19,111 | INFO     | 
[2025-06-06 07:13:51] 2025-06-06 11:13:19,112 | INFO     | job summary report
[2025-06-06 07:13:51] 2025-06-06 11:13:19,112 | INFO     | --------------------------------------------------
[2025-06-06 07:13:51] 2025-06-06 11:13:19,112 | INFO     | PanDA job id: 6681927997
[2025-06-06 07:13:51] 2025-06-06 11:13:19,112 | INFO     | task id: 45006595
[2025-06-06 07:13:51] 2025-06-06 11:13:19,112 | INFO     | errors: (none)
[2025-06-06 07:13:51] 2025-06-06 11:13:19,112 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 07:13:51] 2025-06-06 11:13:19,112 | INFO     | pilot state: finished 
[2025-06-06 07:13:51] 2025-06-06 11:13:19,112 | INFO     | transexitcode: 0
[2025-06-06 07:13:51] 2025-06-06 11:13:19,112 | INFO     | exeerrorcode: 0
[2025-06-06 07:13:51] 2025-06-06 11:13:19,113 | INFO     | exeerrordiag: 
[2025-06-06 07:13:51] 2025-06-06 11:13:19,113 | INFO     | exitcode: 0
[2025-06-06 07:13:51] 2025-06-06 11:13:19,113 | INFO     | exitmsg: OK
[2025-06-06 07:13:51] 2025-06-06 11:13:19,113 | INFO     | cpuconsumptiontime: 27806 s
[2025-06-06 07:13:51] 2025-06-06 11:13:19,113 | INFO     | nevents: 400
[2025-06-06 07:13:51] 2025-06-06 11:13:19,113 | INFO     | neventsw: 0
[2025-06-06 07:13:51] 2025-06-06 11:13:19,113 | INFO     | pid: 315860
[2025-06-06 07:13:51] 2025-06-06 11:13:19,113 | INFO     | pgrp: 315860
[2025-06-06 07:13:51] 2025-06-06 11:13:19,113 | INFO     | corecount: 8
[2025-06-06 07:13:51] 2025-06-06 11:13:19,113 | INFO     | event service: False
[2025-06-06 07:13:51] 2025-06-06 11:13:19,113 | INFO     | sizes: {0: 2397461, 1: 2397660, 6: 2397922, 11: 2397950, 4032: 2423787, 4033: 2432728, 4035: 2432912, 4041: 2433106}
[2025-06-06 07:13:51] 2025-06-06 11:13:19,113 | INFO     | --------------------------------------------------
[2025-06-06 07:13:51] 2025-06-06 11:13:19,113 | INFO     | 
[2025-06-06 07:13:51] 2025-06-06 11:13:19,113 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-06 07:13:51] 2025-06-06 11:13:19,154 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 07:13:51] 2025-06-06 11:13:19,154 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 07:13:51] 2025-06-06 11:13:19,154 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 07:13:51] 2025-06-06 11:13:19,155 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 07:13:51] 2025-06-06 11:13:19,155 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 07:13:51] 2025-06-06 11:13:19,155 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 07:13:51] 2025-06-06 11:13:19,155 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 07:13:51] 2025-06-06 11:13:19,155 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 07:13:51] 2025-06-06 11:13:19,155 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 07:13:51] 2025-06-06 11:13:19,155 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 07:13:51] 2025-06-06 11:13:19,155 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 07:13:51] 2025-06-06 11:13:19,155 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 07:13:51] 2025-06-06 11:13:19,155 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 07:13:51] 2025-06-06 11:13:19,155 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 07:13:51] 2025-06-06 11:13:19,155 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 07:13:51] 2025-06-06 11:13:19,155 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 07:13:51] 2025-06-06 11:13:19,155 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 07:13:51] 2025-06-06 11:13:19,155 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 07:13:51] 2025-06-06 11:13:19,155 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 07:13:51] 2025-06-06 11:13:19,156 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 07:13:51] 2025-06-06 11:13:19,156 | INFO     | job 6681927997 has completed (purged errors)
[2025-06-06 07:13:51] 2025-06-06 11:13:19,156 | INFO     | overall cleanup function is called
[2025-06-06 07:13:51] 2025-06-06 11:13:20,164 | INFO     | --- collectZombieJob: --- 10, [315860]
[2025-06-06 07:13:51] 2025-06-06 11:13:20,164 | INFO     | zombie collector waiting for pid 315860
[2025-06-06 07:13:51] 2025-06-06 11:13:20,164 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 07:13:51] 2025-06-06 11:13:20,164 | INFO     | collected zombie processes
[2025-06-06 07:13:51] 2025-06-06 11:13:20,164 | INFO     | will attempt to kill all subprocesses of pid=315860
[2025-06-06 07:13:51] 2025-06-06 11:13:20,478 | INFO     | process IDs to be killed: [315860] (in reverse order)
[2025-06-06 07:13:51] 2025-06-06 11:13:20,593 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 07:13:51] 2025-06-06 11:13:20,593 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 07:13:51] 2025-06-06 11:13:20,610 | INFO     | did not find any defunct processes belonging to 315860
[2025-06-06 07:13:51] 2025-06-06 11:13:20,624 | INFO     | did not find any defunct processes belonging to 315860
[2025-06-06 07:13:51] 2025-06-06 11:13:20,625 | INFO     | ready for new job
[2025-06-06 07:13:51] 2025-06-06 11:13:20,625 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 07:13:51] 2025-06-06 11:13:20,627 | INFO     | ***************************************
[2025-06-06 07:13:51] 2025-06-06 11:13:20,627 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-06 07:13:51] 2025-06-06 11:13:20,627 | INFO     | ***************************************
[2025-06-06 07:13:51] 2025-06-06 11:13:20,627 | INFO     | 
[2025-06-06 07:13:51] 2025-06-06 11:13:20,644 | INFO     | architecture information:
[2025-06-06 07:13:51] 2025-06-06 11:13:20,645 | INFO     | executing command: cat /etc/os-release
[2025-06-06 07:13:51] 2025-06-06 11:13:20,664 | INFO     | cat /etc/os-release:
[2025-06-06 07:13:51] NAME="CentOS Linux"
[2025-06-06 07:13:51] VERSION="7 (Core)"
[2025-06-06 07:13:51] ID="centos"
[2025-06-06 07:13:51] ID_LIKE="rhel fedora"
[2025-06-06 07:13:51] VERSION_ID="7"
[2025-06-06 07:13:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 07:13:51] ANSI_COLOR="0;31"
[2025-06-06 07:13:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 07:13:51] HOME_URL="https://www.centos.org/"
[2025-06-06 07:13:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 07:13:51] 
[2025-06-06 07:13:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 07:13:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 07:13:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 07:13:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 07:13:51] 
[2025-06-06 07:13:51] 2025-06-06 11:13:20,665 | INFO     | ***************************************
[2025-06-06 07:13:51] 2025-06-06 11:13:21,167 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-06 07:13:51] 2025-06-06 11:13:21,188 | INFO     | sufficient remaining disk space (96711213056 B)
[2025-06-06 07:13:51] 2025-06-06 11:13:21,188 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 07:13:51] 2025-06-06 11:13:21,189 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 07:13:51] 2025-06-06 11:13:21,189 | INFO     | update_server=False
[2025-06-06 07:13:51] 2025-06-06 11:13:21,189 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 07:13:51] 2025-06-06 11:13:21,297 | INFO     | all data control threads have been joined
[2025-06-06 07:13:51] 2025-06-06 11:13:21,640 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 07:13:51] 2025-06-06 11:13:21,766 | INFO     | all payload control threads have been joined
[2025-06-06 07:13:51] 2025-06-06 11:13:21,796 | INFO     | all job control threads have been joined
[2025-06-06 07:13:51] 2025-06-06 11:13:21,977 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 07:13:51] 2025-06-06 11:13:21,977 | INFO     | aborting loop
[2025-06-06 07:13:51] 2025-06-06 11:13:22,193 | INFO     | [job] retrieve thread has finished
[2025-06-06 07:13:51] 2025-06-06 11:13:22,297 | INFO     | [data] control thread has finished
[2025-06-06 07:13:51] 2025-06-06 11:13:22,331 | INFO     | [payload] validate_post thread has finished
[2025-06-06 07:13:51] 2025-06-06 11:13:22,425 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 07:13:51] 2025-06-06 11:13:22,517 | INFO     | [payload] failed_post thread has finished
[2025-06-06 07:13:51] 2025-06-06 11:13:22,772 | INFO     | [payload] control thread has finished
[2025-06-06 07:13:51] 2025-06-06 11:13:22,802 | INFO     | [job] control thread has finished
[2025-06-06 07:13:51] 2025-06-06 11:13:22,869 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 07:13:51] 2025-06-06 11:13:22,931 | INFO     | [job] validate thread has finished
[2025-06-06 07:13:51] 2025-06-06 11:13:22,979 | INFO     | [job] job monitor thread has finished
[2025-06-06 07:13:51] 2025-06-06 11:13:23,200 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 07:13:51] 2025-06-06 11:13:23,368 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 07:13:51] 2025-06-06 11:13:23,637 | INFO     | [data] copytool_in thread has finished
[2025-06-06 07:13:51] 2025-06-06 11:13:23,637 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 07:13:51] 2025-06-06 11:13:23,645 | INFO     | [data] copytool_out thread has finished
[2025-06-06 07:13:51] 2025-06-06 11:13:24,126 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 07:13:51] 2025-06-06 11:13:25,132 | INFO     | [job] queue monitor thread has finished
[2025-06-06 07:13:51] 2025-06-06 11:13:27,203 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 07:13:51] 2025-06-06 11:13:28,095 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139720860600128)>', '<ExcThread(monitor, started 139719916648192)>']
[2025-06-06 07:13:51] 2025-06-06 11:13:33,121 | INFO     | all workflow threads have been joined
[2025-06-06 07:13:51] 2025-06-06 11:13:33,121 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 07:13:51] 2025-06-06 11:13:33,121 | INFO     | traces error code: 0
[2025-06-06 07:13:51] 2025-06-06 11:13:33,122 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 07:13:51] 2025-06-06 11:13:50,846 | INFO     | PID=308553 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-06 07:13:51] 2025-06-06 11:13:50,847 | INFO     | .. there are 12 such processes running
[2025-06-06 07:13:51] 2025-06-06 11:13:50,847 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 07:13:51] 2025-06-06 11:13:50,847 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 07:13:51] 2025-06-06 11:13:50,847 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 07:13:51] 2025-06-06 11:13:50,848 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 07:13:51] 2025-06-06 11:13:50,848 | INFO     | [monitor] control thread has ended
[2025-06-06 07:13:51] 2025-06-06 11:13:50,998 [wrapper] ==== pilot stdout END ====
[2025-06-06 07:13:51] 2025-06-06 11:13:51,004 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 07:13:51] 2025-06-06 11:13:51,007 [wrapper] pilotpid: 308553
[2025-06-06 07:13:51] 2025-06-06 11:13:51,011 [wrapper] Pilot exit status: 0
[2025-06-06 07:13:51] 2025-06-06 11:13:51,031 [wrapper] pandaids: 6681927997
[2025-06-06 07:13:51] 2025-06-06 11:13:51,114 [wrapper] cleanup supervisor_pilot  544467 308554
[2025-06-06 07:13:51] 2025-06-06 11:13:51,119 [wrapper] Test setup, not cleaning
[2025-06-06 07:13:51] 2025-06-06 11:13:51,122 [wrapper] apfmon messages muted
[2025-06-06 07:13:51] 2025-06-06 11:13:51,124 [wrapper] ==== wrapper stdout END ====
[2025-06-06 07:13:51] 2025-06-06 11:13:51,127 [wrapper] ==== wrapper stderr END ====
[2025-06-06 07:13:51]  *** Error codes and diagnostics ***
[2025-06-06 07:13:51]     "exeErrorCode": 0,
[2025-06-06 07:13:51]     "exeErrorDiag": "",
[2025-06-06 07:13:51]     "pilotErrorCode": 0,
[2025-06-06 07:13:51]     "pilotErrorDiag": "",
[2025-06-06 07:13:51]  *** Listing of results directory ***
[2025-06-06 07:13:51] total 384436
[2025-06-06 07:13:51] -rwx------. 1 boincer umatlas     37140 Jun  6 05:59 runpilot2-wrapper.sh
[2025-06-06 07:13:51] -rw-r--r--. 1 boincer umatlas      5112 Jun  6 05:59 queuedata.json
[2025-06-06 07:13:51] -rw-r--r--. 1 boincer umatlas    529402 Jun  6 05:59 pilot3.tar.gz
[2025-06-06 07:13:51] -rw-r--r--. 1 boincer umatlas       100 Jun  6 06:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 07:13:51] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  6 06:05 run_atlas
[2025-06-06 07:13:51] -rw-r--r--. 1 boincer umatlas       105 Jun  6 06:05 job.xml
[2025-06-06 07:13:51] -rw-r--r--. 2 boincer umatlas 212698225 Jun  6 06:05 EVNT.45006593._002027.pool.root.1
[2025-06-06 07:13:51] -rw-r--r--. 2 boincer umatlas     15095 Jun  6 06:05 start_atlas.sh
[2025-06-06 07:13:51] drwxrwx--x. 2 boincer umatlas      4096 Jun  6 06:05 shared
[2025-06-06 07:13:51] -rw-r--r--. 2 boincer umatlas    541902 Jun  6 06:05 input.tar.gz
[2025-06-06 07:13:51] -rw-r--r--. 1 boincer umatlas         0 Jun  6 06:05 boinc_lockfile
[2025-06-06 07:13:51] -rw-r--r--. 1 boincer umatlas      2524 Jun  6 06:05 pandaJob.out
[2025-06-06 07:13:51] -rw-------. 1 boincer umatlas    987967 Jun  6 06:05 agis_schedconf.cvmfs.json
[2025-06-06 07:13:51] -rw-------. 1 boincer umatlas   1598969 Jun  6 06:05 agis_ddmendpoints.agis.ALL.json
[2025-06-06 07:13:51] drwx------. 4 boincer umatlas      4096 Jun  6 06:05 pilot3
[2025-06-06 07:13:51] -rw-------. 1 boincer umatlas 175668276 Jun  6 07:12 HITS.45006595._057144.pool.root.1
[2025-06-06 07:13:51] -rw-r--r--. 1 boincer umatlas       529 Jun  6 07:12 boinc_task_state.xml
[2025-06-06 07:13:51] -rw-------. 1 boincer umatlas        95 Jun  6 07:13 pilot_heartbeat.json
[2025-06-06 07:13:51] -rw-------. 1 boincer umatlas      1031 Jun  6 07:13 memory_monitor_summary.json
[2025-06-06 07:13:51] -rw-r--r--. 1 boincer umatlas      6897 Jun  6 07:13 init_data.xml
[2025-06-06 07:13:51] -rw-------. 1 boincer umatlas    291783 Jun  6 07:13 log.45006595._057144.job.log.tgz.1
[2025-06-06 07:13:51] -rw-------. 1 boincer umatlas      7703 Jun  6 07:13 heartbeat.json
[2025-06-06 07:13:51] -rw-r--r--. 1 boincer umatlas        27 Jun  6 07:13 wrapper_checkpoint.txt
[2025-06-06 07:13:51] -rw-r--r--. 1 boincer umatlas      8192 Jun  6 07:13 boinc_mmap_file
[2025-06-06 07:13:51] -rw-------. 1 boincer umatlas       822 Jun  6 07:13 pilotlog.txt
[2025-06-06 07:13:51] -rw-------. 1 boincer umatlas    408000 Jun  6 07:13 log.45006595._057144.job.log.1
[2025-06-06 07:13:51] -rw-------. 1 boincer umatlas       357 Jun  6 07:13 output.list
[2025-06-06 07:13:51] -rw-r--r--. 1 boincer umatlas       620 Jun  6 07:13 runtime_log
[2025-06-06 07:13:51] -rw-------. 1 boincer umatlas    716800 Jun  6 07:13 result.tar.gz
[2025-06-06 07:13:51] -rw-r--r--. 1 boincer umatlas      8660 Jun  6 07:13 runtime_log.err
[2025-06-06 07:13:51] -rw-------. 1 boincer umatlas       653 Jun  6 07:13 6zZKDmQ2ih7n9Rq4apOajLDm4fhM0noT9bVof3QYDmr5aKDmZnmR8m.diag
[2025-06-06 07:13:51] -rw-r--r--. 1 boincer umatlas     21614 Jun  6 07:13 stderr.txt
[2025-06-06 07:13:51] HITS file was successfully produced:
[2025-06-06 07:13:51] -rw-------. 1 boincer umatlas 175668276 Jun  6 07:12 shared/HITS.pool.root.1
[2025-06-06 07:13:51]  *** Contents of shared directory: ***
[2025-06-06 07:13:51] total 380524
[2025-06-06 07:13:51] -rw-r--r--. 2 boincer umatlas 212698225 Jun  6 06:05 ATLAS.root_0
[2025-06-06 07:13:51] -rw-r--r--. 2 boincer umatlas     15095 Jun  6 06:05 start_atlas.sh
[2025-06-06 07:13:51] -rw-r--r--. 2 boincer umatlas    541902 Jun  6 06:05 input.tar.gz
[2025-06-06 07:13:51] -rw-------. 1 boincer umatlas 175668276 Jun  6 07:12 HITS.pool.root.1
[2025-06-06 07:13:51] -rw-------. 1 boincer umatlas    716800 Jun  6 07:13 result.tar.gz
07:13:52 (304829): run_atlas exited; CPU time 27836.126109
07:13:52 (304829): called boinc_finish(0)

</stderr_txt>
]]>

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