Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:31:20 (2659966): wrapper (7.7.26015): starting
04:31:20 (2659966): wrapper: running run_atlas (--nthreads 12)
[2025-06-06 04:31:20] Arguments: --nthreads 12
[2025-06-06 04:31:20] Threads: 12
[2025-06-06 04:31:20] Checking for CVMFS
[2025-06-06 04:31:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 04:31:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 04:31:20] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 04:31:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 04:31:20] 2.12.6.0 40552 3441 197508 146847 0 605 19078171 32935937 10188 16776704 0 9068766 99.401 15566707 37167 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-06 04:31:20] CVMFS is ok
[2025-06-06 04:31:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 04:31:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 04:31:20] Further information can be found at the LHC@home message board.
[2025-06-06 04:31:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 04:31:20] Checking for apptainer binary...
[2025-06-06 04:31:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 04:31:20] Running /usr/bin/apptainer --version
[2025-06-06 04:31:20] apptainer version 1.4.1-1.el9
[2025-06-06 04:31:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 04:31:20] c6-1-26-4.aglt2.org
[2025-06-06 04:31:20] apptainer works
[2025-06-06 04:31:20] Set ATHENA_PROC_NUMBER=12
[2025-06-06 04:31:20] Set ATHENA_CORE_NUMBER=12
[2025-06-06 04:31:20] Starting ATLAS job with PandaID=6681854237
[2025-06-06 04:31:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 05:29:17]  *** The last 200 lines of the pilot log: ***
[2025-06-06 05:29:17]  mtime=0
[2025-06-06 05:29:17]  protocol_id=None
[2025-06-06 05:29:17]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 05:29:17]  replicas=None
[2025-06-06 05:29:17]  scope=mc23_13p6TeV
[2025-06-06 05:29:17]  status=None
[2025-06-06 05:29:17]  status_code=0
[2025-06-06 05:29:17]  storage_token=
[2025-06-06 05:29:17]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6681854237/log.45006595._057141.job.log.tgz.1
[2025-06-06 05:29:17]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a0/f5/log.45006595._057141.job.log.tgz.1
[2025-06-06 05:29:17]  workdir=None
[2025-06-06 05:29:17] ]
[2025-06-06 05:29:17] 2025-06-06 09:28:36,175 | INFO     | transferring file log.45006595._057141.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6681854237/log.45006595._057141.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-06 05:29:17] 2025-06-06 09:28:36,175 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6681854237/log.45006595._057141.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._057141.job
[2025-06-06 05:29:17] 2025-06-06 09:28:36,194 | INFO     | adding to output.list: log.45006595._057141.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a0/f5/log.45006595._057141.job.log.tg
[2025-06-06 05:29:17] 2025-06-06 09:28:36,195 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 05:29:17] 2025-06-06 09:28:36,195 | INFO     | summary of transferred files:
[2025-06-06 05:29:17] 2025-06-06 09:28:36,195 | INFO     |  -- lfn=log.45006595._057141.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 05:29:17] 2025-06-06 09:28:36,196 | INFO     | stage-out finished correctly
[2025-06-06 05:29:17] 2025-06-06 09:28:36,627 | INFO     | PID=2664438 has CPU usage=11.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-06 05:29:17] 2025-06-06 09:28:36,627 | INFO     | .. there are 11 such processes running
[2025-06-06 05:29:17] 2025-06-06 09:28:37,709 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 05:29:17] 2025-06-06 09:28:38,010 | INFO     | monitor loop #251: job 0:6681854237 is in state 'finished'
[2025-06-06 05:29:17] 2025-06-06 09:28:38,011 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 05:29:17] 2025-06-06 09:28:40,291 | INFO     | job 6681854237 has state=finished
[2025-06-06 05:29:17] 2025-06-06 09:28:40,291 | INFO     | preparing for final server update for job 6681854237 in state='finished'
[2025-06-06 05:29:17] 2025-06-06 09:28:40,292 | INFO     | this job has now completed (state=finished)
[2025-06-06 05:29:17] 2025-06-06 09:28:40,292 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 05:29:17] 2025-06-06 09:28:40,292 | INFO     | log transfer has been attempted: DONE
[2025-06-06 05:29:17] 2025-06-06 09:28:40,292 | INFO     | job 6681854237 has finished - writing final server update
[2025-06-06 05:29:17] 2025-06-06 09:28:40,293 | INFO     | total number of processed events: 400 (read)
[2025-06-06 05:29:17] 2025-06-06 09:28:40,293 | INFO     | executing command: lscpu
[2025-06-06 05:29:17] 2025-06-06 09:28:40,349 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 05:29:17] 2025-06-06 09:28:40,513 | INFO     | monitor loop #252: job 0:6681854237 is in state 'finished'
[2025-06-06 05:29:17] 2025-06-06 09:28:40,514 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 05:29:17] 2025-06-06 09:28:43,017 | INFO     | monitor loop #253: job 0:6681854237 is in state 'finished'
[2025-06-06 05:29:17] 2025-06-06 09:28:43,017 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 05:29:17] 2025-06-06 09:28:43,980 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-06 05:29:17] 2025-06-06 09:28:43,983 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2818.138696428571
[2025-06-06 05:29:17] 2025-06-06 09:28:43,993 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6681854237/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 05:29:17] 2025-06-06 09:28:43,994 | INFO     | extracted standard info from prmon json
[2025-06-06 05:29:17] 2025-06-06 09:28:43,994 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 05:29:17] 2025-06-06 09:28:43,994 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 05:29:17] 2025-06-06 09:28:43,995 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 05:29:17] 2025-06-06 09:28:43,995 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 05:29:17] 2025-06-06 09:28:43,996 | INFO     | fitting pss+swap vs Time
[2025-06-06 05:29:17] 2025-06-06 09:28:43,997 | INFO     | sum of square deviations: 36465800.97959179
[2025-06-06 05:29:17] 2025-06-06 09:28:43,997 | INFO     | sum of deviations: 716945892.8571429
[2025-06-06 05:29:17] 2025-06-06 09:28:43,997 | INFO     | mean x: 1749200487.0204082
[2025-06-06 05:29:17] 2025-06-06 09:28:43,997 | INFO     | mean y: 2791749.1428571427
[2025-06-06 05:29:17] 2025-06-06 09:28:43,997 | INFO     | -- intersect: -34387844717.469986
[2025-06-06 05:29:17] 2025-06-06 09:28:43,997 | INFO     | intersect: -34387844717.469986
[2025-06-06 05:29:17] 2025-06-06 09:28:43,998 | INFO     | chi2: 0.0038484930043997953
[2025-06-06 05:29:17] 2025-06-06 09:28:43,998 | INFO     | -- intersect: -34387844717.469986
[2025-06-06 05:29:17] 2025-06-06 09:28:43,998 | INFO     | current memory leak: 19.66 B/s (using 49 data points, chi2=0.00)
[2025-06-06 05:29:17] 2025-06-06 09:28:43,998 | INFO     | could have reported an average CPU frequency of 2898 MHz (5 samples)
[2025-06-06 05:29:17] 2025-06-06 09:28:43,998 | INFO     | ..............................
[2025-06-06 05:29:17] 2025-06-06 09:28:43,998 | INFO     | . Timing measurements:
[2025-06-06 05:29:17] 2025-06-06 09:28:43,998 | INFO     | . get job = 0 s
[2025-06-06 05:29:17] 2025-06-06 09:28:43,999 | INFO     | . initial setup = 2 s
[2025-06-06 05:29:17] 2025-06-06 09:28:43,999 | INFO     | . payload setup = 7 s
[2025-06-06 05:29:17] 2025-06-06 09:28:43,999 | INFO     | . stage-in = 0 s
[2025-06-06 05:29:17] 2025-06-06 09:28:43,999 | INFO     | . payload execution = 3395 s
[2025-06-06 05:29:17] 2025-06-06 09:28:43,999 | INFO     | . stage-out = 1 s
[2025-06-06 05:29:17] 2025-06-06 09:28:43,999 | INFO     | . log creation = 0 s
[2025-06-06 05:29:17] 2025-06-06 09:28:43,999 | INFO     | ..............................
[2025-06-06 05:29:17] 2025-06-06 09:28:44,089 | INFO     | 
[2025-06-06 05:29:17] 2025-06-06 09:28:44,089 | INFO     | job summary report
[2025-06-06 05:29:17] 2025-06-06 09:28:44,089 | INFO     | --------------------------------------------------
[2025-06-06 05:29:17] 2025-06-06 09:28:44,090 | INFO     | PanDA job id: 6681854237
[2025-06-06 05:29:17] 2025-06-06 09:28:44,090 | INFO     | task id: 45006595
[2025-06-06 05:29:17] 2025-06-06 09:28:44,090 | INFO     | errors: (none)
[2025-06-06 05:29:17] 2025-06-06 09:28:44,090 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 05:29:17] 2025-06-06 09:28:44,090 | INFO     | pilot state: finished 
[2025-06-06 05:29:17] 2025-06-06 09:28:44,090 | INFO     | transexitcode: 0
[2025-06-06 05:29:17] 2025-06-06 09:28:44,090 | INFO     | exeerrorcode: 0
[2025-06-06 05:29:17] 2025-06-06 09:28:44,090 | INFO     | exeerrordiag: 
[2025-06-06 05:29:17] 2025-06-06 09:28:44,090 | INFO     | exitcode: 0
[2025-06-06 05:29:17] 2025-06-06 09:28:44,090 | INFO     | exitmsg: OK
[2025-06-06 05:29:17] 2025-06-06 09:28:44,090 | INFO     | cpuconsumptiontime: 31967 s
[2025-06-06 05:29:17] 2025-06-06 09:28:44,090 | INFO     | nevents: 400
[2025-06-06 05:29:17] 2025-06-06 09:28:44,090 | INFO     | neventsw: 0
[2025-06-06 05:29:17] 2025-06-06 09:28:44,090 | INFO     | pid: 2672548
[2025-06-06 05:29:17] 2025-06-06 09:28:44,091 | INFO     | pgrp: 2672548
[2025-06-06 05:29:17] 2025-06-06 09:28:44,091 | INFO     | corecount: 12
[2025-06-06 05:29:17] 2025-06-06 09:28:44,091 | INFO     | event service: False
[2025-06-06 05:29:17] 2025-06-06 09:28:44,091 | INFO     | sizes: {0: 2397682, 1: 2397682, 5: 2397972, 11: 2398028, 3407: 2423528, 3409: 2432497, 3411: 2432681, 3417: 2432907}
[2025-06-06 05:29:17] 2025-06-06 09:28:44,091 | INFO     | --------------------------------------------------
[2025-06-06 05:29:17] 2025-06-06 09:28:44,091 | INFO     | 
[2025-06-06 05:29:17] 2025-06-06 09:28:44,091 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-06 05:29:17] 2025-06-06 09:28:44,109 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 05:29:17] 2025-06-06 09:28:44,109 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 05:29:17] 2025-06-06 09:28:44,109 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 05:29:17] 2025-06-06 09:28:44,109 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 05:29:17] 2025-06-06 09:28:44,109 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 05:29:17] 2025-06-06 09:28:44,109 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 05:29:17] 2025-06-06 09:28:44,109 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 05:29:17] 2025-06-06 09:28:44,109 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 05:29:17] 2025-06-06 09:28:44,109 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 05:29:17] 2025-06-06 09:28:44,110 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 05:29:17] 2025-06-06 09:28:44,110 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 05:29:17] 2025-06-06 09:28:44,110 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 05:29:17] 2025-06-06 09:28:44,110 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 05:29:17] 2025-06-06 09:28:44,110 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 05:29:17] 2025-06-06 09:28:44,110 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 05:29:17] 2025-06-06 09:28:44,110 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 05:29:17] 2025-06-06 09:28:44,110 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 05:29:17] 2025-06-06 09:28:44,110 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 05:29:17] 2025-06-06 09:28:44,110 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 05:29:17] 2025-06-06 09:28:44,110 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 05:29:17] 2025-06-06 09:28:44,110 | INFO     | job 6681854237 has completed (purged errors)
[2025-06-06 05:29:17] 2025-06-06 09:28:44,111 | INFO     | overall cleanup function is called
[2025-06-06 05:29:17] 2025-06-06 09:28:45,118 | INFO     | --- collectZombieJob: --- 10, [2672548]
[2025-06-06 05:29:17] 2025-06-06 09:28:45,119 | INFO     | zombie collector waiting for pid 2672548
[2025-06-06 05:29:17] 2025-06-06 09:28:45,119 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 05:29:17] 2025-06-06 09:28:45,119 | INFO     | collected zombie processes
[2025-06-06 05:29:17] 2025-06-06 09:28:45,119 | INFO     | will attempt to kill all subprocesses of pid=2672548
[2025-06-06 05:29:17] 2025-06-06 09:28:45,347 | INFO     | process IDs to be killed: [2672548] (in reverse order)
[2025-06-06 05:29:17] 2025-06-06 09:28:45,430 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 05:29:17] 2025-06-06 09:28:45,430 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 05:29:17] 2025-06-06 09:28:45,440 | INFO     | did not find any defunct processes belonging to 2672548
[2025-06-06 05:29:17] 2025-06-06 09:28:45,449 | INFO     | did not find any defunct processes belonging to 2672548
[2025-06-06 05:29:17] 2025-06-06 09:28:45,449 | INFO     | ready for new job
[2025-06-06 05:29:17] 2025-06-06 09:28:45,449 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 05:29:17] 2025-06-06 09:28:45,451 | INFO     | ***************************************
[2025-06-06 05:29:17] 2025-06-06 09:28:45,451 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-06 05:29:17] 2025-06-06 09:28:45,451 | INFO     | ***************************************
[2025-06-06 05:29:17] 2025-06-06 09:28:45,451 | INFO     | 
[2025-06-06 05:29:17] 2025-06-06 09:28:45,466 | INFO     | architecture information:
[2025-06-06 05:29:17] 2025-06-06 09:28:45,466 | INFO     | executing command: cat /etc/os-release
[2025-06-06 05:29:17] 2025-06-06 09:28:45,481 | INFO     | cat /etc/os-release:
[2025-06-06 05:29:17] NAME="CentOS Linux"
[2025-06-06 05:29:17] VERSION="7 (Core)"
[2025-06-06 05:29:17] ID="centos"
[2025-06-06 05:29:17] ID_LIKE="rhel fedora"
[2025-06-06 05:29:17] VERSION_ID="7"
[2025-06-06 05:29:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 05:29:17] ANSI_COLOR="0;31"
[2025-06-06 05:29:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 05:29:17] HOME_URL="https://www.centos.org/"
[2025-06-06 05:29:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 05:29:17] 
[2025-06-06 05:29:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 05:29:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 05:29:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 05:29:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 05:29:17] 
[2025-06-06 05:29:17] 2025-06-06 09:28:45,481 | INFO     | ***************************************
[2025-06-06 05:29:17] 2025-06-06 09:28:45,984 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-06 05:29:17] 2025-06-06 09:28:45,999 | INFO     | sufficient remaining disk space (75899076608 B)
[2025-06-06 05:29:17] 2025-06-06 09:28:46,000 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 05:29:17] 2025-06-06 09:28:46,000 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 05:29:17] 2025-06-06 09:28:46,000 | INFO     | update_server=False
[2025-06-06 05:29:17] 2025-06-06 09:28:46,000 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 05:29:17] 2025-06-06 09:28:46,000 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 05:29:17] 2025-06-06 09:28:46,037 | INFO     | all data control threads have been joined
[2025-06-06 05:29:17] 2025-06-06 09:28:46,295 | INFO     | all payload control threads have been joined
[2025-06-06 05:29:17] 2025-06-06 09:28:46,530 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 05:29:17] 2025-06-06 09:28:46,531 | INFO     | aborting loop
[2025-06-06 05:29:17] 2025-06-06 09:28:46,795 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 05:29:17] 2025-06-06 09:28:46,998 | INFO     | all job control threads have been joined
[2025-06-06 05:29:17] 2025-06-06 09:28:47,006 | INFO     | [job] retrieve thread has finished
[2025-06-06 05:29:17] 2025-06-06 09:28:47,006 | INFO     | [job] queue monitor thread has finished
[2025-06-06 05:29:17] 2025-06-06 09:28:47,043 | INFO     | [data] control thread has finished
[2025-06-06 05:29:17] 2025-06-06 09:28:47,246 | INFO     | [data] copytool_in thread has finished
[2025-06-06 05:29:17] 2025-06-06 09:28:47,249 | INFO     | [job] validate thread has finished
[2025-06-06 05:29:17] 2025-06-06 09:28:47,301 | INFO     | [payload] control thread has finished
[2025-06-06 05:29:17] 2025-06-06 09:28:47,535 | INFO     | [job] job monitor thread has finished
[2025-06-06 05:29:17] 2025-06-06 09:28:47,621 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 05:29:17] 2025-06-06 09:28:47,667 | INFO     | [payload] validate_post thread has finished
[2025-06-06 05:29:17] 2025-06-06 09:28:48,003 | INFO     | [job] control thread has finished
[2025-06-06 05:29:17] 2025-06-06 09:28:48,123 | INFO     | [payload] failed_post thread has finished
[2025-06-06 05:29:17] 2025-06-06 09:28:48,283 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 05:29:17] 2025-06-06 09:28:48,311 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 05:29:17] 2025-06-06 09:28:48,407 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 05:29:17] 2025-06-06 09:28:48,464 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 05:29:17] 2025-06-06 09:28:48,801 | INFO     | [data] copytool_out thread has finished
[2025-06-06 05:29:17] 2025-06-06 09:28:52,317 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 05:29:17] 2025-06-06 09:28:52,788 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139703618774848)>', '<ExcThread(monitor, started 139702996821760)>']
[2025-06-06 05:29:17] 2025-06-06 09:28:57,813 | INFO     | all workflow threads have been joined
[2025-06-06 05:29:17] 2025-06-06 09:28:57,813 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 05:29:17] 2025-06-06 09:28:57,814 | INFO     | traces error code: 0
[2025-06-06 05:29:17] 2025-06-06 09:28:57,814 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 05:29:17] 2025-06-06 09:29:16,993 | INFO     | PID=2664438 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-06 05:29:17] 2025-06-06 09:29:16,993 | INFO     | .. there are 10 such processes running
[2025-06-06 05:29:17] 2025-06-06 09:29:16,993 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 05:29:17] 2025-06-06 09:29:16,994 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 05:29:17] 2025-06-06 09:29:16,994 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 05:29:17] 2025-06-06 09:29:16,994 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 05:29:17] 2025-06-06 09:29:16,994 | INFO     | [monitor] control thread has ended
[2025-06-06 05:29:17] 2025-06-06 09:29:17,147 [wrapper] ==== pilot stdout END ====
[2025-06-06 05:29:17] 2025-06-06 09:29:17,150 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 05:29:17] 2025-06-06 09:29:17,153 [wrapper] pilotpid: 2664438
[2025-06-06 05:29:17] 2025-06-06 09:29:17,156 [wrapper] Pilot exit status: 0
[2025-06-06 05:29:17] 2025-06-06 09:29:17,167 [wrapper] pandaids: 6681854237
[2025-06-06 05:29:17] 2025-06-06 09:29:17,240 [wrapper] cleanup supervisor_pilot 2794430 2664439
[2025-06-06 05:29:17] 2025-06-06 09:29:17,243 [wrapper] Test setup, not cleaning
[2025-06-06 05:29:17] 2025-06-06 09:29:17,246 [wrapper] apfmon messages muted
[2025-06-06 05:29:17] 2025-06-06 09:29:17,249 [wrapper] ==== wrapper stdout END ====
[2025-06-06 05:29:17] 2025-06-06 09:29:17,252 [wrapper] ==== wrapper stderr END ====
[2025-06-06 05:29:17]  *** Error codes and diagnostics ***
[2025-06-06 05:29:17]     "exeErrorCode": 0,
[2025-06-06 05:29:17]     "exeErrorDiag": "",
[2025-06-06 05:29:17]     "pilotErrorCode": 0,
[2025-06-06 05:29:17]     "pilotErrorDiag": "",
[2025-06-06 05:29:17]  *** Listing of results directory ***
[2025-06-06 05:29:17] total 388588
[2025-06-06 05:29:17] -rwx------. 1 boincer umatlas     37140 Jun  6 04:30 runpilot2-wrapper.sh
[2025-06-06 05:29:17] -rw-r--r--. 1 boincer umatlas    529402 Jun  6 04:30 pilot3.tar.gz
[2025-06-06 05:29:17] -rw-r--r--. 1 boincer umatlas      5112 Jun  6 04:30 queuedata.json
[2025-06-06 05:29:17] -rw-r--r--. 1 boincer umatlas       100 Jun  6 04:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 05:29:17] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  6 04:31 run_atlas
[2025-06-06 05:29:17] -rw-r--r--. 1 boincer umatlas       105 Jun  6 04:31 job.xml
[2025-06-06 05:29:17] -rw-r--r--. 2 boincer umatlas 215930209 Jun  6 04:31 EVNT.45006593._001719.pool.root.1
[2025-06-06 05:29:17] -rw-r--r--. 2 boincer umatlas     15095 Jun  6 04:31 start_atlas.sh
[2025-06-06 05:29:17] drwxrwx--x. 2 boincer umatlas      4096 Jun  6 04:31 shared
[2025-06-06 05:29:17] -rw-r--r--. 2 boincer umatlas    541911 Jun  6 04:31 input.tar.gz
[2025-06-06 05:29:17] -rw-r--r--. 1 boincer umatlas         0 Jun  6 04:31 boinc_lockfile
[2025-06-06 05:29:17] -rw-r--r--. 1 boincer umatlas      2524 Jun  6 04:31 pandaJob.out
[2025-06-06 05:29:17] -rw-------. 1 boincer umatlas    987967 Jun  6 04:31 agis_schedconf.cvmfs.json
[2025-06-06 05:29:17] -rw-------. 1 boincer umatlas   1598969 Jun  6 04:31 agis_ddmendpoints.agis.ALL.json
[2025-06-06 05:29:17] drwx------. 4 boincer umatlas      4096 Jun  6 04:31 pilot3
[2025-06-06 05:29:17] -rw-r--r--. 1 boincer umatlas      6841 Jun  6 05:27 init_data.xml
[2025-06-06 05:29:17] -rw-------. 1 boincer umatlas 176689622 Jun  6 05:28 HITS.45006595._057141.pool.root.1
[2025-06-06 05:29:17] -rw-r--r--. 1 boincer umatlas       529 Jun  6 05:28 boinc_task_state.xml
[2025-06-06 05:29:17] -rw-------. 1 boincer umatlas        95 Jun  6 05:28 pilot_heartbeat.json
[2025-06-06 05:29:17] -rw-------. 1 boincer umatlas      1038 Jun  6 05:28 memory_monitor_summary.json
[2025-06-06 05:29:17] -rw-------. 1 boincer umatlas    344358 Jun  6 05:28 log.45006595._057141.job.log.tgz.1
[2025-06-06 05:29:17] -rw-------. 1 boincer umatlas      7744 Jun  6 05:28 heartbeat.json
[2025-06-06 05:29:17] -rw-r--r--. 1 boincer umatlas      8192 Jun  6 05:29 boinc_mmap_file
[2025-06-06 05:29:17] -rw-------. 1 boincer umatlas       823 Jun  6 05:29 pilotlog.txt
[2025-06-06 05:29:17] -rw-r--r--. 1 boincer umatlas        27 Jun  6 05:29 wrapper_checkpoint.txt
[2025-06-06 05:29:17] -rw-------. 1 boincer umatlas    352421 Jun  6 05:29 log.45006595._057141.job.log.1
[2025-06-06 05:29:17] -rw-------. 1 boincer umatlas       357 Jun  6 05:29 output.list
[2025-06-06 05:29:17] -rw-r--r--. 1 boincer umatlas       620 Jun  6 05:29 runtime_log
[2025-06-06 05:29:17] -rw-------. 1 boincer umatlas    716800 Jun  6 05:29 result.tar.gz
[2025-06-06 05:29:17] -rw-r--r--. 1 boincer umatlas      8667 Jun  6 05:29 runtime_log.err
[2025-06-06 05:29:17] -rw-------. 1 boincer umatlas       653 Jun  6 05:29 1YgMDmaehh7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmj6nKDmu77VHm.diag
[2025-06-06 05:29:17] -rw-r--r--. 1 boincer umatlas     21857 Jun  6 05:29 stderr.txt
[2025-06-06 05:29:17] HITS file was successfully produced:
[2025-06-06 05:29:17] -rw-------. 1 boincer umatlas 176689622 Jun  6 05:28 shared/HITS.pool.root.1
[2025-06-06 05:29:17]  *** Contents of shared directory: ***
[2025-06-06 05:29:17] total 384676
[2025-06-06 05:29:17] -rw-r--r--. 2 boincer umatlas 215930209 Jun  6 04:31 ATLAS.root_0
[2025-06-06 05:29:17] -rw-r--r--. 2 boincer umatlas     15095 Jun  6 04:31 start_atlas.sh
[2025-06-06 05:29:17] -rw-r--r--. 2 boincer umatlas    541911 Jun  6 04:31 input.tar.gz
[2025-06-06 05:29:17] -rw-------. 1 boincer umatlas 176689622 Jun  6 05:28 HITS.pool.root.1
[2025-06-06 05:29:17] -rw-------. 1 boincer umatlas    716800 Jun  6 05:29 result.tar.gz
05:29:18 (2659966): run_atlas exited; CPU time 32021.395235
05:29:18 (2659966): called boinc_finish(0)

</stderr_txt>
]]>

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