Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:13:55 (1913881): wrapper (7.7.26015): starting
04:13:55 (1913881): wrapper: running run_atlas (--nthreads 8)
[2025-06-06 04:13:55] Arguments: --nthreads 8
[2025-06-06 04:13:55] Threads: 8
[2025-06-06 04:13:55] Checking for CVMFS
[2025-06-06 04:13:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 04:13:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 04:13:55] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 04:13:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 04:13:56] 2.10.1.0 4440 2497 80928 146847 1 17 15593691 18432000 917 130560 0 1026779 99.528 929567 24180 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-06 04:13:56] CVMFS is ok
[2025-06-06 04:13:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 04:13:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 04:13:56] Further information can be found at the LHC@home message board.
[2025-06-06 04:13:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 04:13:56] Checking for apptainer binary...
[2025-06-06 04:13:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 04:13:56] Running /usr/bin/apptainer --version
[2025-06-06 04:13:56] apptainer version 1.1.9-1.el8
[2025-06-06 04:13:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 04:13:56] c-16-31.aglt2.org
[2025-06-06 04:13:56] apptainer works
[2025-06-06 04:13:56] Set ATHENA_PROC_NUMBER=8
[2025-06-06 04:13:56] Set ATHENA_CORE_NUMBER=8
[2025-06-06 04:13:56] Starting ATLAS job with PandaID=6677920805
[2025-06-06 04:13:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 05:37:26]  *** The last 200 lines of the pilot log: ***
[2025-06-06 05:37:26]  lfn=log.45006595._042315.job.log.tgz.1
[2025-06-06 05:37:26]  mtime=0
[2025-06-06 05:37:26]  protocol_id=None
[2025-06-06 05:37:26]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 05:37:26]  replicas=None
[2025-06-06 05:37:26]  scope=mc23_13p6TeV
[2025-06-06 05:37:26]  status=None
[2025-06-06 05:37:26]  status_code=0
[2025-06-06 05:37:26]  storage_token=
[2025-06-06 05:37:26]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6677920805/log.45006595._042315.job.log.tgz.1
[2025-06-06 05:37:26]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/d9/log.45006595._042315.job.log.tgz.1
[2025-06-06 05:37:26]  workdir=None
[2025-06-06 05:37:26] ]
[2025-06-06 05:37:26] 2025-06-06 09:37:04,501 | INFO     | transferring file log.45006595._042315.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6677920805/log.45006595._042315.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-06 05:37:26] 2025-06-06 09:37:04,501 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6677920805/log.45006595._042315.job.log.tgz.1 /tmp/boinchome/slots/1/log.45006595._042315.job
[2025-06-06 05:37:26] 2025-06-06 09:37:04,511 | INFO     | adding to output.list: log.45006595._042315.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/d9/log.45006595._042315.job.log.tg
[2025-06-06 05:37:26] 2025-06-06 09:37:04,512 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 05:37:26] 2025-06-06 09:37:04,512 | INFO     | summary of transferred files:
[2025-06-06 05:37:26] 2025-06-06 09:37:04,512 | INFO     |  -- lfn=log.45006595._042315.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 05:37:26] 2025-06-06 09:37:04,512 | INFO     | stage-out finished correctly
[2025-06-06 05:37:26] 2025-06-06 09:37:06,622 | INFO     | monitor loop #379: job 0:6677920805 is in state 'finished'
[2025-06-06 05:37:26] 2025-06-06 09:37:06,622 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 05:37:26] 2025-06-06 09:37:06,684 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 05:37:26] 2025-06-06 09:37:07,484 | INFO     | PID=1917569 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-06 05:37:26] 2025-06-06 09:37:09,125 | INFO     | monitor loop #380: job 0:6677920805 is in state 'finished'
[2025-06-06 05:37:26] 2025-06-06 09:37:09,125 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 05:37:26] 2025-06-06 09:37:09,456 | INFO     | job 6677920805 has state=finished
[2025-06-06 05:37:26] 2025-06-06 09:37:09,456 | INFO     | preparing for final server update for job 6677920805 in state='finished'
[2025-06-06 05:37:26] 2025-06-06 09:37:09,456 | INFO     | this job has now completed (state=finished)
[2025-06-06 05:37:26] 2025-06-06 09:37:09,457 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 05:37:26] 2025-06-06 09:37:09,457 | INFO     | log transfer has been attempted: DONE
[2025-06-06 05:37:26] 2025-06-06 09:37:09,457 | INFO     | job 6677920805 has finished - writing final server update
[2025-06-06 05:37:26] 2025-06-06 09:37:09,457 | INFO     | total number of processed events: 400 (read)
[2025-06-06 05:37:26] 2025-06-06 09:37:09,470 | INFO     | executing command: lscpu
[2025-06-06 05:37:26] 2025-06-06 09:37:09,506 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 05:37:26] 2025-06-06 09:37:11,628 | INFO     | monitor loop #381: job 0:6677920805 is in state 'finished'
[2025-06-06 05:37:26] 2025-06-06 09:37:11,628 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 05:37:26] 2025-06-06 09:37:14,131 | INFO     | monitor loop #382: job 0:6677920805 is in state 'finished'
[2025-06-06 05:37:26] 2025-06-06 09:37:14,131 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 05:37:26] 2025-06-06 09:37:14,407 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-06 05:37:26] 2025-06-06 09:37:14,407 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6677920805/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 05:37:26] 2025-06-06 09:37:14,408 | INFO     | extracted standard info from prmon json
[2025-06-06 05:37:26] 2025-06-06 09:37:14,408 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 05:37:26] 2025-06-06 09:37:14,408 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 05:37:26] 2025-06-06 09:37:14,408 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 05:37:26] 2025-06-06 09:37:14,408 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 05:37:26] 2025-06-06 09:37:14,410 | INFO     | fitting pss+swap vs Time
[2025-06-06 05:37:26] 2025-06-06 09:37:14,410 | INFO     | sum of square deviations: 130793150.0
[2025-06-06 05:37:26] 2025-06-06 09:37:14,411 | INFO     | sum of deviations: 2771864461.0000005
[2025-06-06 05:37:26] 2025-06-06 09:37:14,411 | INFO     | mean x: 1749200227.0
[2025-06-06 05:37:26] 2025-06-06 09:37:14,411 | INFO     | mean y: 2960409.453333333
[2025-06-06 05:37:26] 2025-06-06 09:37:14,411 | INFO     | -- intersect: -37067375035.44141
[2025-06-06 05:37:26] 2025-06-06 09:37:14,411 | INFO     | intersect: -37067375035.44141
[2025-06-06 05:37:26] 2025-06-06 09:37:14,411 | INFO     | chi2: 0.0016301785097543793
[2025-06-06 05:37:26] 2025-06-06 09:37:14,411 | INFO     | -- intersect: -37067375035.44141
[2025-06-06 05:37:26] 2025-06-06 09:37:14,412 | INFO     | current memory leak: 21.19 B/s (using 75 data points, chi2=0.00)
[2025-06-06 05:37:26] 2025-06-06 09:37:14,412 | INFO     | ..............................
[2025-06-06 05:37:26] 2025-06-06 09:37:14,412 | INFO     | . Timing measurements:
[2025-06-06 05:37:26] 2025-06-06 09:37:14,412 | INFO     | . get job = 0 s
[2025-06-06 05:37:26] 2025-06-06 09:37:14,412 | INFO     | . initial setup = 2 s
[2025-06-06 05:37:26] 2025-06-06 09:37:14,412 | INFO     | . payload setup = 4 s
[2025-06-06 05:37:26] 2025-06-06 09:37:14,412 | INFO     | . stage-in = 0 s
[2025-06-06 05:37:26] 2025-06-06 09:37:14,412 | INFO     | . payload execution = 4958 s
[2025-06-06 05:37:26] 2025-06-06 09:37:14,413 | INFO     | . stage-out = 0 s
[2025-06-06 05:37:26] 2025-06-06 09:37:14,413 | INFO     | . log creation = 0 s
[2025-06-06 05:37:26] 2025-06-06 09:37:14,413 | INFO     | ..............................
[2025-06-06 05:37:26] 2025-06-06 09:37:14,802 | INFO     | 
[2025-06-06 05:37:26] 2025-06-06 09:37:14,802 | INFO     | job summary report
[2025-06-06 05:37:26] 2025-06-06 09:37:14,802 | INFO     | --------------------------------------------------
[2025-06-06 05:37:26] 2025-06-06 09:37:14,802 | INFO     | PanDA job id: 6677920805
[2025-06-06 05:37:26] 2025-06-06 09:37:14,802 | INFO     | task id: 45006595
[2025-06-06 05:37:26] 2025-06-06 09:37:14,802 | INFO     | errors: (none)
[2025-06-06 05:37:26] 2025-06-06 09:37:14,802 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 05:37:26] 2025-06-06 09:37:14,802 | INFO     | pilot state: finished 
[2025-06-06 05:37:26] 2025-06-06 09:37:14,803 | INFO     | transexitcode: 0
[2025-06-06 05:37:26] 2025-06-06 09:37:14,803 | INFO     | exeerrorcode: 0
[2025-06-06 05:37:26] 2025-06-06 09:37:14,803 | INFO     | exeerrordiag: 
[2025-06-06 05:37:26] 2025-06-06 09:37:14,803 | INFO     | exitcode: 0
[2025-06-06 05:37:26] 2025-06-06 09:37:14,803 | INFO     | exitmsg: OK
[2025-06-06 05:37:26] 2025-06-06 09:37:14,803 | INFO     | cpuconsumptiontime: 36776 s
[2025-06-06 05:37:26] 2025-06-06 09:37:14,803 | INFO     | nevents: 400
[2025-06-06 05:37:26] 2025-06-06 09:37:14,803 | INFO     | neventsw: 0
[2025-06-06 05:37:26] 2025-06-06 09:37:14,803 | INFO     | pid: 1924102
[2025-06-06 05:37:26] 2025-06-06 09:37:14,803 | INFO     | pgrp: 1924102
[2025-06-06 05:37:26] 2025-06-06 09:37:14,803 | INFO     | corecount: 8
[2025-06-06 05:37:26] 2025-06-06 09:37:14,803 | INFO     | event service: False
[2025-06-06 05:37:26] 2025-06-06 09:37:14,803 | INFO     | sizes: {0: 2397115, 1: 2397370, 3: 2397576, 11: 2397604, 4966: 2432812, 4968: 2432812, 4976: 2433110}
[2025-06-06 05:37:26] 2025-06-06 09:37:14,804 | INFO     | --------------------------------------------------
[2025-06-06 05:37:26] 2025-06-06 09:37:14,804 | INFO     | 
[2025-06-06 05:37:26] 2025-06-06 09:37:14,804 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-06 05:37:26] 2025-06-06 09:37:14,815 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 05:37:26] 2025-06-06 09:37:14,816 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 05:37:26] 2025-06-06 09:37:14,816 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 05:37:26] 2025-06-06 09:37:14,816 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 05:37:26] 2025-06-06 09:37:14,816 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 05:37:26] 2025-06-06 09:37:14,816 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 05:37:26] 2025-06-06 09:37:14,816 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 05:37:26] 2025-06-06 09:37:14,816 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 05:37:26] 2025-06-06 09:37:14,816 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 05:37:26] 2025-06-06 09:37:14,816 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 05:37:26] 2025-06-06 09:37:14,816 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 05:37:26] 2025-06-06 09:37:14,817 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 05:37:26] 2025-06-06 09:37:14,817 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 05:37:26] 2025-06-06 09:37:14,817 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 05:37:26] 2025-06-06 09:37:14,817 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 05:37:26] 2025-06-06 09:37:14,817 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 05:37:26] 2025-06-06 09:37:14,817 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 05:37:26] 2025-06-06 09:37:14,817 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 05:37:26] 2025-06-06 09:37:14,817 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 05:37:26] 2025-06-06 09:37:14,817 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 05:37:26] 2025-06-06 09:37:14,817 | INFO     | job 6677920805 has completed (purged errors)
[2025-06-06 05:37:26] 2025-06-06 09:37:14,818 | INFO     | overall cleanup function is called
[2025-06-06 05:37:26] 2025-06-06 09:37:15,825 | INFO     | --- collectZombieJob: --- 10, [1924102]
[2025-06-06 05:37:26] 2025-06-06 09:37:15,825 | INFO     | zombie collector waiting for pid 1924102
[2025-06-06 05:37:26] 2025-06-06 09:37:15,825 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 05:37:26] 2025-06-06 09:37:15,825 | INFO     | collected zombie processes
[2025-06-06 05:37:26] 2025-06-06 09:37:15,825 | INFO     | will attempt to kill all subprocesses of pid=1924102
[2025-06-06 05:37:26] 2025-06-06 09:37:15,958 | INFO     | process IDs to be killed: [1924102] (in reverse order)
[2025-06-06 05:37:26] 2025-06-06 09:37:15,993 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 05:37:26] 2025-06-06 09:37:15,993 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 05:37:26] 2025-06-06 09:37:15,997 | INFO     | did not find any defunct processes belonging to 1924102
[2025-06-06 05:37:26] 2025-06-06 09:37:16,001 | INFO     | did not find any defunct processes belonging to 1924102
[2025-06-06 05:37:26] 2025-06-06 09:37:16,001 | INFO     | ready for new job
[2025-06-06 05:37:26] 2025-06-06 09:37:16,001 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 05:37:26] 2025-06-06 09:37:16,002 | INFO     | **************************************
[2025-06-06 05:37:26] 2025-06-06 09:37:16,002 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 05:37:26] 2025-06-06 09:37:16,002 | INFO     | **************************************
[2025-06-06 05:37:26] 2025-06-06 09:37:16,002 | INFO     | 
[2025-06-06 05:37:26] 2025-06-06 09:37:16,015 | INFO     | architecture information:
[2025-06-06 05:37:26] 2025-06-06 09:37:16,015 | INFO     | executing command: cat /etc/os-release
[2025-06-06 05:37:26] 2025-06-06 09:37:16,022 | INFO     | cat /etc/os-release:
[2025-06-06 05:37:26] NAME="CentOS Linux"
[2025-06-06 05:37:26] VERSION="7 (Core)"
[2025-06-06 05:37:26] ID="centos"
[2025-06-06 05:37:26] ID_LIKE="rhel fedora"
[2025-06-06 05:37:26] VERSION_ID="7"
[2025-06-06 05:37:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 05:37:26] ANSI_COLOR="0;31"
[2025-06-06 05:37:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 05:37:26] HOME_URL="https://www.centos.org/"
[2025-06-06 05:37:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 05:37:26] 
[2025-06-06 05:37:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 05:37:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 05:37:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 05:37:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 05:37:26] 
[2025-06-06 05:37:26] 2025-06-06 09:37:16,022 | INFO     | **************************************
[2025-06-06 05:37:26] 2025-06-06 09:37:16,525 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-06 05:37:26] 2025-06-06 09:37:16,534 | INFO     | sufficient remaining disk space (106481844224 B)
[2025-06-06 05:37:26] 2025-06-06 09:37:16,534 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 05:37:26] 2025-06-06 09:37:16,534 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 05:37:26] 2025-06-06 09:37:16,534 | INFO     | update_server=False
[2025-06-06 05:37:26] 2025-06-06 09:37:16,534 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 05:37:26] 2025-06-06 09:37:16,634 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-06 05:37:26] 2025-06-06 09:37:16,635 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-06 05:37:26] 2025-06-06 09:37:16,635 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 05:37:26] 2025-06-06 09:37:16,635 | INFO     | will abort loop
[2025-06-06 05:37:26] 2025-06-06 09:37:17,246 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 05:37:26] 2025-06-06 09:37:17,463 | INFO     | all data control threads have been joined
[2025-06-06 05:37:26] 2025-06-06 09:37:17,505 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 05:37:26] 2025-06-06 09:37:17,505 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 05:37:26] 2025-06-06 09:37:17,506 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 05:37:26] 2025-06-06 09:37:17,540 | INFO     | [job] retrieve thread has finished
[2025-06-06 05:37:26] 2025-06-06 09:37:17,587 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 05:37:26] 2025-06-06 09:37:17,640 | INFO     | [job] job monitor thread has finished
[2025-06-06 05:37:26] 2025-06-06 09:37:17,764 | INFO     | all job control threads have been joined
[2025-06-06 05:37:26] 2025-06-06 09:37:17,856 | INFO     | [payload] validate_post thread has finished
[2025-06-06 05:37:26] 2025-06-06 09:37:18,013 | INFO     | all payload control threads have been joined
[2025-06-06 05:37:26] 2025-06-06 09:37:18,468 | INFO     | [data] control thread has finished
[2025-06-06 05:37:26] 2025-06-06 09:37:18,494 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 05:37:26] 2025-06-06 09:37:18,596 | INFO     | [payload] failed_post thread has finished
[2025-06-06 05:37:26] 2025-06-06 09:37:18,675 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 05:37:26] 2025-06-06 09:37:18,726 | INFO     | [job] validate thread has finished
[2025-06-06 05:37:26] 2025-06-06 09:37:18,744 | INFO     | [data] copytool_in thread has finished
[2025-06-06 05:37:26] 2025-06-06 09:37:18,769 | INFO     | [job] control thread has finished
[2025-06-06 05:37:26] 2025-06-06 09:37:18,923 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 05:37:26] 2025-06-06 09:37:18,934 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 05:37:26] 2025-06-06 09:37:19,018 | INFO     | [payload] control thread has finished
[2025-06-06 05:37:26] 2025-06-06 09:37:19,483 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 05:37:26] 2025-06-06 09:37:19,592 | INFO     | [data] copytool_out thread has finished
[2025-06-06 05:37:26] 2025-06-06 09:37:20,489 | INFO     | [job] queue monitor thread has finished
[2025-06-06 05:37:26] 2025-06-06 09:37:21,251 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 05:37:26] 2025-06-06 09:37:21,308 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139990048876352)>', '<ExcThread(monitor, started 139989467776768)>']
[2025-06-06 05:37:26] 2025-06-06 09:37:21,518 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 05:37:26] 2025-06-06 09:37:21,518 | INFO     | [monitor] control thread has ended
[2025-06-06 05:37:26] 2025-06-06 09:37:26,334 | INFO     | all workflow threads have been joined
[2025-06-06 05:37:26] 2025-06-06 09:37:26,334 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 05:37:26] 2025-06-06 09:37:26,334 | INFO     | traces error code: 0
[2025-06-06 05:37:26] 2025-06-06 09:37:26,334 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 05:37:26] 2025-06-06 09:37:26,389 [wrapper] ==== pilot stdout END ====
[2025-06-06 05:37:26] 2025-06-06 09:37:26,390 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 05:37:26] 2025-06-06 09:37:26,392 [wrapper] pilotpid: 1917569
[2025-06-06 05:37:26] 2025-06-06 09:37:26,394 [wrapper] Pilot exit status: 0
[2025-06-06 05:37:26] 2025-06-06 09:37:26,400 [wrapper] pandaids: 6677920805
[2025-06-06 05:37:26] 2025-06-06 09:37:26,425 [wrapper] cleanup supervisor_pilot 2000155 1917570
[2025-06-06 05:37:26] 2025-06-06 09:37:26,428 [wrapper] Test setup, not cleaning
[2025-06-06 05:37:26] 2025-06-06 09:37:26,430 [wrapper] apfmon messages muted
[2025-06-06 05:37:26] 2025-06-06 09:37:26,431 [wrapper] ==== wrapper stdout END ====
[2025-06-06 05:37:26] 2025-06-06 09:37:26,433 [wrapper] ==== wrapper stderr END ====
[2025-06-06 05:37:26]  *** Error codes and diagnostics ***
[2025-06-06 05:37:26]     "exeErrorCode": 0,
[2025-06-06 05:37:26]     "exeErrorDiag": "",
[2025-06-06 05:37:26]     "pilotErrorCode": 0,
[2025-06-06 05:37:26]     "pilotErrorDiag": "",
[2025-06-06 05:37:26]  *** Listing of results directory ***
[2025-06-06 05:37:26] total 390412
[2025-06-06 05:37:26] -rw-r--r-- 1 boincer umatlas    495897 Jun  3 13:46 pilot3.tar.gz
[2025-06-06 05:37:26] -rwx------ 1 boincer umatlas     37140 Jun  3 14:31 runpilot2-wrapper.sh
[2025-06-06 05:37:26] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 14:31 queuedata.json
[2025-06-06 05:37:26] -rw-r--r-- 1 boincer umatlas       100 Jun  6 04:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 05:37:26] -rwxr-xr-x 1 boincer umatlas      7986 Jun  6 04:13 run_atlas
[2025-06-06 05:37:26] -rw-r--r-- 1 boincer umatlas       105 Jun  6 04:13 job.xml
[2025-06-06 05:37:26] -rw-r--r-- 2 boincer umatlas 214112815 Jun  6 04:13 EVNT.45006593._001697.pool.root.1
[2025-06-06 05:37:26] -rw-r--r-- 2 boincer umatlas     15093 Jun  6 04:13 start_atlas.sh
[2025-06-06 05:37:26] drwxrwx--x 2 boincer umatlas      4096 Jun  6 04:13 shared
[2025-06-06 05:37:26] -rw-r--r-- 2 boincer umatlas    508880 Jun  6 04:13 input.tar.gz
[2025-06-06 05:37:26] -rw-r--r-- 1 boincer umatlas         0 Jun  6 04:13 boinc_lockfile
[2025-06-06 05:37:26] -rw-r--r-- 1 boincer umatlas      2525 Jun  6 04:13 pandaJob.out
[2025-06-06 05:37:26] -rw------- 1 boincer umatlas    987967 Jun  6 04:14 agis_schedconf.cvmfs.json
[2025-06-06 05:37:26] -rw------- 1 boincer umatlas   1598969 Jun  6 04:14 agis_ddmendpoints.agis.ALL.json
[2025-06-06 05:37:26] drwx------ 4 boincer umatlas      4096 Jun  6 04:14 pilot3
[2025-06-06 05:37:26] -rw-r--r-- 1 boincer umatlas      6007 Jun  6 05:36 init_data.xml
[2025-06-06 05:37:26] -rw------- 1 boincer umatlas 180236051 Jun  6 05:36 HITS.45006595._042315.pool.root.1
[2025-06-06 05:37:26] -rw-r--r-- 1 boincer umatlas       530 Jun  6 05:36 boinc_task_state.xml
[2025-06-06 05:37:26] -rw------- 1 boincer umatlas        95 Jun  6 05:36 pilot_heartbeat.json
[2025-06-06 05:37:26] -rw------- 1 boincer umatlas      1043 Jun  6 05:37 memory_monitor_summary.json
[2025-06-06 05:37:26] -rw------- 1 boincer umatlas    316661 Jun  6 05:37 log.45006595._042315.job.log.tgz.1
[2025-06-06 05:37:26] -rw-r--r-- 1 boincer umatlas        27 Jun  6 05:37 wrapper_checkpoint.txt
[2025-06-06 05:37:26] -rw-r--r-- 1 boincer umatlas      8192 Jun  6 05:37 boinc_mmap_file
[2025-06-06 05:37:26] -rw------- 1 boincer umatlas      7717 Jun  6 05:37 heartbeat.json
[2025-06-06 05:37:26] -rw------- 1 boincer umatlas      4540 Jun  6 05:37 pilotlog.txt
[2025-06-06 05:37:26] -rw------- 1 boincer umatlas    487288 Jun  6 05:37 log.45006595._042315.job.log.1
[2025-06-06 05:37:26] -rw------- 1 boincer umatlas       357 Jun  6 05:37 output.list
[2025-06-06 05:37:26] -rw-r--r-- 1 boincer umatlas       620 Jun  6 05:37 runtime_log
[2025-06-06 05:37:26] -rw------- 1 boincer umatlas    819200 Jun  6 05:37 result.tar.gz
[2025-06-06 05:37:26] -rw------- 1 boincer umatlas       653 Jun  6 05:37 uM5NDmIblg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYhlKDm7DRllm.diag
[2025-06-06 05:37:26] -rw-r--r-- 1 boincer umatlas      8654 Jun  6 05:37 runtime_log.err
[2025-06-06 05:37:26] -rw-r--r-- 1 boincer umatlas     21671 Jun  6 05:37 stderr.txt
[2025-06-06 05:37:26] HITS file was successfully produced:
[2025-06-06 05:37:26] -rw------- 1 boincer umatlas 180236051 Jun  6 05:36 shared/HITS.pool.root.1
[2025-06-06 05:37:26]  *** Contents of shared directory: ***
[2025-06-06 05:37:26] total 386428
[2025-06-06 05:37:26] -rw-r--r-- 2 boincer umatlas 214112815 Jun  6 04:13 ATLAS.root_0
[2025-06-06 05:37:26] -rw-r--r-- 2 boincer umatlas     15093 Jun  6 04:13 start_atlas.sh
[2025-06-06 05:37:26] -rw-r--r-- 2 boincer umatlas    508880 Jun  6 04:13 input.tar.gz
[2025-06-06 05:37:26] -rw------- 1 boincer umatlas 180236051 Jun  6 05:36 HITS.pool.root.1
[2025-06-06 05:37:26] -rw------- 1 boincer umatlas    819200 Jun  6 05:37 result.tar.gz
05:37:27 (1913881): run_atlas exited; CPU time 36871.532772
05:37:27 (1913881): called boinc_finish(0)

</stderr_txt>
]]>

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