Stderr output

<core_client_version>8.2.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-06 09:32:00 (50404): Detected: vboxwrapper 26206
2025-06-06 09:32:00 (50404): Detected: BOINC client v8.2.1
2025-06-06 09:32:00 (50404): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-06-06 09:32:01 (50404): Successfully copied 'init_data.xml' to the shared directory.
2025-06-06 09:32:01 (50404): Create VM. (boinc_177108107433c962, slot#41)
2025-06-06 09:32:02 (50404): Setting Memory Size for VM. (4096MB)
2025-06-06 09:32:02 (50404): Setting CPU Count for VM. (1)
2025-06-06 09:32:02 (50404): Setting Chipset Options for VM.
2025-06-06 09:32:03 (50404): Setting Graphics Controller Options for VM.
2025-06-06 09:32:03 (50404): Setting Boot Options for VM.
2025-06-06 09:32:03 (50404): Setting Network Configuration for NAT.
2025-06-06 09:32:03 (50404): Enabling VM Network Access.
2025-06-06 09:32:04 (50404): Disabling USB Support for VM.
2025-06-06 09:32:04 (50404): Disabling COM Port Support for VM.
2025-06-06 09:32:04 (50404): Disabling LPT Port Support for VM.
2025-06-06 09:32:04 (50404): Disabling Audio Support for VM.
2025-06-06 09:32:05 (50404): Disabling Clipboard Support for VM.
2025-06-06 09:32:05 (50404): Disabling Drag and Drop Support for VM.
2025-06-06 09:32:05 (50404): Adding storage controller(s) to VM.
2025-06-06 09:32:05 (50404): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-06 09:32:06 (50404): Adding VirtualBox Guest Additions to VM.
2025-06-06 09:32:06 (50404): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-06 09:32:06 (50404): forwarding host port 59332 to guest port 80
2025-06-06 09:32:07 (50404): Enabling remote desktop for VM.
2025-06-06 09:32:07 (50404): Required extension pack not installed, remote desktop not enabled.
2025-06-06 09:32:07 (50404): Enabling shared directory for VM.
2025-06-06 09:32:07 (50404): Starting VM using VBoxManage interface. (boinc_177108107433c962, slot#41)
2025-06-06 09:32:12 (50404): Successfully started VM. (PID = '53348')
2025-06-06 09:32:12 (50404): Reporting VM Process ID to BOINC.
2025-06-06 09:32:12 (50404): Guest Log: BIOS: VirtualBox 7.1.8
2025-06-06 09:32:12 (50404): Guest Log: CPUID EDX: 0x178bfbff
2025-06-06 09:32:12 (50404): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-06 09:32:12 (50404): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-06 09:32:12 (50404): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-06 09:32:12 (50404): Detected: Web Application Enabled (http://localhost:59332)
2025-06-06 09:32:12 (50404): Preference change detected
2025-06-06 09:32:12 (50404): Setting CPU throttle for VM. (100%)
2025-06-06 09:32:12 (50404): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-06 09:32:14 (50404): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-06 09:32:14 (50404): Guest Log: BIOS: Booting from Hard Disk...
2025-06-06 09:32:16 (50404): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-06 09:32:16 (50404): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-06 09:32:16 (50404): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-06 09:32:19 (50404): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-06 09:32:19 (50404): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-06 09:32:24 (50404): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-06 09:32:24 (50404): Guest Log: 00:00:00.000087 main     Log opened 2025-06-06T09:32:22.581032000Z
2025-06-06 09:32:24 (50404): Guest Log: 00:00:00.000187 main     OS Product: Linux
2025-06-06 09:32:24 (50404): Guest Log: 00:00:00.000206 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-06 09:32:24 (50404): Guest Log: 00:00:00.000219 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-06 09:32:24 (50404): Guest Log: 00:00:00.000233 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-06 09:32:24 (50404): Guest Log: 00:00:00.000233 main     Process ID: 1245
2025-06-06 09:32:24 (50404): Guest Log: 00:00:00.000233 main     Package type: LINUX_64BITS_GENERIC
2025-06-06 09:32:24 (50404): Guest Log: 00:00:00.000904 main     5.2.32 r132073 started. Verbose level = 0
2025-06-06 09:32:24 (50404): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-06 09:32:24 (50404): Guest Log: [INFO] Mounting shared directory
2025-06-06 09:32:24 (50404): Guest Log: [INFO] Checking for init_data.xml
2025-06-06 09:32:26 (50404): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-06 09:32:26 (50404): Guest Log: [INFO] Detected branch: prod
2025-06-06 09:32:26 (50404): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-06 09:32:26 (50404): Guest Log: Copying input files
2025-06-06 09:32:27 (50404): Guest Log: Copied input files into RunAtlas.
2025-06-06 09:32:27 (50404): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-06-06 09:32:34 (50404): Guest Log: 00:00:10.010881 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 355 941 000ns (GuestNow=1 749 195 154 235 420 000 ns GuestLast=1 749 202 342 591 361 000 ns fSetTimeLastLoop=true )
2025-06-06 09:32:40 (50404): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-06 09:32:40 (50404): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-06 09:32:40 (50404): Guest Log: 2.6.3.0 1514 0 31528 146847 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-06-06 09:32:40 (50404): Guest Log: copied the webapp to /var/www
2025-06-06 09:32:40 (50404): Guest Log: core_number=1
2025-06-06 09:32:40 (50404): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-06 09:32:40 (50404): Guest Log:  *** Starting ATLAS job. (PandaID=6668993115 taskID=44871837) ***
2025-06-06 11:12:15 (50404): Status Report: Elapsed Time: '6000.000000'
2025-06-06 11:12:15 (50404): Status Report: CPU Time: '5745.187500'
2025-06-06 12:52:17 (50404): Status Report: Elapsed Time: '12000.000000'
2025-06-06 12:52:17 (50404): Status Report: CPU Time: '11721.984375'
2025-06-06 14:32:20 (50404): Status Report: Elapsed Time: '18000.000000'
2025-06-06 14:32:20 (50404): Status Report: CPU Time: '17698.734375'
2025-06-06 16:12:23 (50404): Status Report: Elapsed Time: '24000.000000'
2025-06-06 16:12:23 (50404): Status Report: CPU Time: '23673.187500'
2025-06-06 17:52:25 (50404): Status Report: Elapsed Time: '30000.000000'
2025-06-06 17:52:25 (50404): Status Report: CPU Time: '29649.687500'
2025-06-06 18:16:15 (50404): Guest Log:  *** Job finished ***
2025-06-06 18:16:15 (50404): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-06 18:16:15 (50404): Guest Log: 2025-06-06 16:15:54,389 | INFO     | [data] copytool_in thread has finished
2025-06-06 18:16:15 (50404): Guest Log: 2025-06-06 16:15:54,968 | INFO     | [data] copytool_out thread has finished
2025-06-06 18:16:15 (50404): Guest Log: 2025-06-06 16:15:56,631 | INFO     | [data] queue_monitor thread has finished
2025-06-06 18:16:15 (50404): Guest Log: 2025-06-06 16:15:57,438 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140650884806464)>', '<ExcThread(monitor, started 140650305545984)>']
2025-06-06 18:16:15 (50404): Guest Log: 2025-06-06 16:15:57,971 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-06 18:16:15 (50404): Guest Log: 2025-06-06 16:15:57,971 | INFO     | [monitor] control thread has ended
2025-06-06 18:16:15 (50404): Guest Log: 2025-06-06 16:16:02,444 | INFO     | all workflow threads have been joined
2025-06-06 18:16:15 (50404): Guest Log: 2025-06-06 16:16:02,444 | INFO     | end of generic workflow (traces error code: 0)
2025-06-06 18:16:15 (50404): Guest Log: 2025-06-06 16:16:02,444 | INFO     | traces error code: 0
2025-06-06 18:16:15 (50404): Guest Log: 2025-06-06 16:16:02,444 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-06 18:16:15 (50404): Guest Log: 2025-06-06 16:16:02,531 [wrapper] ==== pilot stdout END ====
2025-06-06 18:16:15 (50404): Guest Log: 2025-06-06 16:16:02,533 [wrapper] ==== wrapper stdout RESUME ====
2025-06-06 18:16:15 (50404): Guest Log: 2025-06-06 16:16:02,534 [wrapper] pilotpid: 5773
2025-06-06 18:16:15 (50404): Guest Log: 2025-06-06 16:16:02,535 [wrapper] Pilot exit status: 0
2025-06-06 18:16:15 (50404): Guest Log: 2025-06-06 16:16:02,557 [wrapper] pandaids: 6668993115
2025-06-06 18:16:15 (50404): Guest Log: 2025-06-06 16:16:02,576 [wrapper] cleanup supervisor_pilot  8296 5774
2025-06-06 18:16:15 (50404): Guest Log: 2025-06-06 16:16:02,578 [wrapper] Test setup, not cleaning
2025-06-06 18:16:15 (50404): Guest Log: 2025-06-06 16:16:02,580 [wrapper] apfmon messages muted
2025-06-06 18:16:15 (50404): Guest Log: 2025-06-06 16:16:02,582 [wrapper] ==== wrapper stdout END ====
2025-06-06 18:16:15 (50404): Guest Log: 2025-06-06 16:16:02,584 [wrapper] ==== wrapper stderr END ====
2025-06-06 18:16:15 (50404): Guest Log:  *** Error codes and diagnostics ***
2025-06-06 18:16:15 (50404): Guest Log:     "exeErrorCode": 0,
2025-06-06 18:16:15 (50404): Guest Log:     "exeErrorDiag": "",
2025-06-06 18:16:15 (50404): Guest Log:     "pilotErrorCode": 0,
2025-06-06 18:16:15 (50404): Guest Log:     "pilotErrorDiag": "",
2025-06-06 18:16:15 (50404): Guest Log:  *** Listing of results directory ***
2025-06-06 18:16:15 (50404): Guest Log: total 201684
2025-06-06 18:16:15 (50404): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 29 00:49 pilot3.tar.gz
2025-06-06 18:16:15 (50404): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 29 00:54 queuedata.json
2025-06-06 18:16:15 (50404): Guest Log: -rwx------. 1 atlas atlas     37140 May 29 00:55 runpilot2-wrapper.sh
2025-06-06 18:16:15 (50404): Guest Log: -rwxr-xr-x. 1 atlas atlas      9354 Jun  6 07:32 init_data.xml
2025-06-06 18:16:15 (50404): Guest Log: -rwxr-xr-x. 1 atlas atlas    508877 Jun  6 07:32 input.tar.gz
2025-06-06 18:16:15 (50404): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  6 07:32 start_atlas.sh
2025-06-06 18:16:15 (50404): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  6 07:32 EVNT.44871834._003604.pool.root.1 -> /data/./ATLAS.root_0
2025-06-06 18:16:15 (50404): Guest Log: -rw-r--r--. 1 atlas atlas      2558 Jun  6 07:32 pandaJob.out
2025-06-06 18:16:15 (50404): Guest Log: -rw-------. 1 atlas atlas    987967 Jun  6 07:33 agis_schedconf.cvmfs.json
2025-06-06 18:16:15 (50404): Guest Log: drwx------. 4 atlas atlas      4096 Jun  6 07:33 pilot3
2025-06-06 18:16:15 (50404): Guest Log: -rw-------. 1 atlas atlas        95 Jun  6 16:14 pilot_heartbeat.json
2025-06-06 18:16:15 (50404): Guest Log: -rw-------. 1 atlas atlas 196380573 Jun  6 16:15 HITS.44871837._092642.pool.root.1
2025-06-06 18:16:15 (50404): Guest Log: -rw-------. 1 atlas atlas      1025 Jun  6 16:15 memory_monitor_summary.json
2025-06-06 18:16:15 (50404): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  6 16:15 agis_ddmendpoints.agis.ALL.json
2025-06-06 18:16:15 (50404): Guest Log: -rw-------. 1 atlas atlas    426143 Jun  6 16:15 log.44871837._092642.job.log.tgz.1
2025-06-06 18:16:15 (50404): Guest Log: -rw-------. 1 atlas atlas      7673 Jun  6 16:15 heartbeat.json
2025-06-06 18:16:15 (50404): Guest Log: -rw-------. 1 atlas atlas      4722 Jun  6 16:16 pilotlog.txt
2025-06-06 18:16:15 (50404): Guest Log: -rw-------. 1 atlas atlas   2761996 Jun  6 16:16 log.44871837._092642.job.log.1
2025-06-06 18:16:15 (50404): Guest Log: -rw-------. 1 atlas atlas       357 Jun  6 16:16 output.list
2025-06-06 18:16:15 (50404): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  6 16:16 runtime_log
2025-06-06 18:16:15 (50404): Guest Log: -rw-------. 1 atlas atlas   3205120 Jun  6 16:16 result.tar.gz
2025-06-06 18:16:15 (50404): Guest Log: -rw-r--r--. 1 atlas atlas      8465 Jun  6 16:16 runtime_log.err
2025-06-06 18:16:15 (50404): Guest Log: -rw-------. 1 atlas atlas       657 Jun  6 16:16 McAODmTjge7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmvRdKDmqTjMJn.diag
2025-06-06 18:16:15 (50404): Guest Log: Looking for outputfile HITS.44871837._092642.pool.root.1
2025-06-06 18:16:15 (50404): Guest Log: HITS file was successfully produced
2025-06-06 18:16:15 (50404): Guest Log: -rw-------. 1 atlas atlas 196380573 Jun  6 16:15 /home/atlas/RunAtlas/HITS.44871837._092642.pool.root.1
2025-06-06 18:16:15 (50404): Guest Log: Successfully finished the ATLAS job!
2025-06-06 18:16:15 (50404): Guest Log: Copying the results back to the shared directory!
2025-06-06 18:16:16 (50404): Guest Log:  *** Contents of shared directory: ***
2025-06-06 18:16:16 (50404): Guest Log: total 412760
2025-06-06 18:16:16 (50404): Guest Log: -rwxrwxrwx. 1 root root 222535620 Jun  6 07:32 ATLAS.root_0
2025-06-06 18:16:16 (50404): Guest Log: -rwxrwxrwx. 1 root root 196380573 Jun  6  2025 HITS.pool.root.1
2025-06-06 18:16:16 (50404): Guest Log: -rwxrwxrwx. 1 root root      9354 Jun  6 07:32 init_data.xml
2025-06-06 18:16:16 (50404): Guest Log: -rwxrwxrwx. 1 root root    508877 Jun  6 07:31 input.tar.gz
2025-06-06 18:16:16 (50404): Guest Log: -rwxrwxrwx. 1 root root   3205120 Jun  6  2025 result.tar.gz
2025-06-06 18:16:16 (50404): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  6 07:31 start_atlas.sh
2025-06-06 18:16:16 (50404): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-06 18:16:16 (50404): VM Completion File Detected.
2025-06-06 18:16:16 (50404): Powering off VM.
2025-06-06 18:16:17 (50404): Successfully stopped VM.
2025-06-06 18:16:17 (50404): Deregistering VM. (boinc_177108107433c962, slot#41)
2025-06-06 18:16:17 (50404): Removing network bandwidth throttle group from VM.
2025-06-06 18:16:17 (50404): Removing VM from VirtualBox.
18:16:22 (50404): called boinc_finish(0)

</stderr_txt>
]]>

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