Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:24:07 (3049607): wrapper (7.7.26015): starting
10:24:07 (3049607): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 10:24:07] Arguments: --nthreads 4
[2025-06-06 10:24:07] Threads: 4
[2025-06-06 10:24:07] Checking for CVMFS
[2025-06-06 10:24:07] No cvmfs_config command found, will try listing directly
[2025-06-06 10:24:07] CVMFS is ok
[2025-06-06 10:24:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 10:24:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 10:24:07] Further information can be found at the LHC@home message board.
[2025-06-06 10:24:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 10:24:07] Checking for apptainer binary...
[2025-06-06 10:24:07] which: no apptainer in ((null))
[2025-06-06 10:24:07] apptainer is not installed, using version from CVMFS
[2025-06-06 10:24:07] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 10:24:07] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot76/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-06-06 10:24:07] apptainer works
[2025-06-06 10:24:07] Set ATHENA_PROC_NUMBER=4
[2025-06-06 10:24:07] Set ATHENA_CORE_NUMBER=4
[2025-06-06 10:24:07] Starting ATLAS job with PandaID=6681762897
[2025-06-06 10:24:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot76/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 11:52:57]  *** The last 200 lines of the pilot log: ***
[2025-06-06 11:52:57]  lfn=log.45006595._057134.job.log.tgz.1
[2025-06-06 11:52:57]  mtime=0
[2025-06-06 11:52:57]  protocol_id=None
[2025-06-06 11:52:57]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 11:52:57]  replicas=None
[2025-06-06 11:52:57]  scope=mc23_13p6TeV
[2025-06-06 11:52:57]  status=None
[2025-06-06 11:52:57]  status_code=0
[2025-06-06 11:52:57]  storage_token=
[2025-06-06 11:52:57]  surl=/scratch/boinc/var/slot76/slots/0/PanDA_Pilot-6681762897/log.45006595._057134.job.log.tgz.1
[2025-06-06 11:52:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f9/58/log.45006595._057134.job.log.tgz.1
[2025-06-06 11:52:57]  workdir=None
[2025-06-06 11:52:57] ]
[2025-06-06 11:52:57] 2025-06-06 09:52:13,969 | INFO     | transferring file log.45006595._057134.job.log.tgz.1 from /scratch/boinc/var/slot76/slots/0/PanDA_Pilot-6681762897/log.45006595._057134.job.log.tgz.1 to /scratch/b
[2025-06-06 11:52:57] 2025-06-06 09:52:13,969 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot76/slots/0/PanDA_Pilot-6681762897/log.45006595._057134.job.log.tgz.1 /scratch/boinc/var/slot76/slots/0/lo
[2025-06-06 11:52:57] 2025-06-06 09:52:13,989 | INFO     | adding to output.list: log.45006595._057134.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f9/58/log.45006595._057134.job.log.tg
[2025-06-06 11:52:57] 2025-06-06 09:52:13,990 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 11:52:57] 2025-06-06 09:52:13,990 | INFO     | summary of transferred files:
[2025-06-06 11:52:57] 2025-06-06 09:52:13,990 | INFO     |  -- lfn=log.45006595._057134.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 11:52:57] 2025-06-06 09:52:13,990 | INFO     | stage-out finished correctly
[2025-06-06 11:52:57] 2025-06-06 09:52:14,900 | INFO     | PID=3053529 has CPU usage=9.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-06 11:52:57] 2025-06-06 09:52:14,900 | INFO     | .. there are 5 such processes running
[2025-06-06 11:52:57] 2025-06-06 09:52:16,227 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 11:52:57] 2025-06-06 09:52:17,834 | INFO     | job 6681762897 has state=finished
[2025-06-06 11:52:57] 2025-06-06 09:52:17,834 | INFO     | preparing for final server update for job 6681762897 in state='finished'
[2025-06-06 11:52:57] 2025-06-06 09:52:17,835 | INFO     | this job has now completed (state=finished)
[2025-06-06 11:52:57] 2025-06-06 09:52:17,835 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 11:52:57] 2025-06-06 09:52:17,835 | INFO     | log transfer has been attempted: DONE
[2025-06-06 11:52:57] 2025-06-06 09:52:17,835 | INFO     | job 6681762897 has finished - writing final server update
[2025-06-06 11:52:57] 2025-06-06 09:52:17,835 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_4142255/.job.ad'
[2025-06-06 11:52:57] 2025-06-06 09:52:17,835 | INFO     | total number of processed events: 400 (read)
[2025-06-06 11:52:57] 2025-06-06 09:52:17,836 | INFO     | executing command: lscpu
[2025-06-06 11:52:57] 2025-06-06 09:52:17,903 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 11:52:57] 2025-06-06 09:52:18,977 | WARNING  | process 3060927 can no longer be monitored (due to stat problems) - aborting
[2025-06-06 11:52:57] 2025-06-06 09:52:18,978 | INFO     | using path: /scratch/boinc/var/slot76/slots/0/PanDA_Pilot-6681762897/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 11:52:57] 2025-06-06 09:52:19,322 | INFO     | number of running child processes to parent process 3060927: 1
[2025-06-06 11:52:57] 2025-06-06 09:52:19,322 | INFO     | maximum number of monitored processes: 6
[2025-06-06 11:52:57] 2025-06-06 09:52:21,494 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 11:52:57] 2025-06-06 09:52:21,506 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2805.6310546874997
[2025-06-06 11:52:57] 2025-06-06 09:52:21,521 | INFO     | using path: /scratch/boinc/var/slot76/slots/0/PanDA_Pilot-6681762897/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 11:52:57] 2025-06-06 09:52:21,521 | INFO     | extracted standard info from prmon json
[2025-06-06 11:52:57] 2025-06-06 09:52:21,521 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 11:52:57] 2025-06-06 09:52:21,521 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 11:52:57] 2025-06-06 09:52:21,522 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 11:52:57] 2025-06-06 09:52:21,522 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 11:52:57] 2025-06-06 09:52:21,523 | INFO     | fitting pss+swap vs Time
[2025-06-06 11:52:57] 2025-06-06 09:52:21,523 | INFO     | sum of square deviations: 158737860.0
[2025-06-06 11:52:57] 2025-06-06 09:52:21,523 | INFO     | sum of deviations: 39574847.999999985
[2025-06-06 11:52:57] 2025-06-06 09:52:21,523 | INFO     | mean x: 1749200997.5
[2025-06-06 11:52:57] 2025-06-06 09:52:21,523 | INFO     | mean y: 2430714.525
[2025-06-06 11:52:57] 2025-06-06 09:52:21,524 | INFO     | -- intersect: -433661617.8115381
[2025-06-06 11:52:57] 2025-06-06 09:52:21,524 | INFO     | intersect: -433661617.8115381
[2025-06-06 11:52:57] 2025-06-06 09:52:21,524 | INFO     | chi2: 0.0025997720487847703
[2025-06-06 11:52:57] 2025-06-06 09:52:21,524 | INFO     | -- intersect: -433661617.8115381
[2025-06-06 11:52:57] 2025-06-06 09:52:21,524 | INFO     | current memory leak: 0.25 B/s (using 80 data points, chi2=0.00)
[2025-06-06 11:52:57] 2025-06-06 09:52:21,524 | INFO     | could have reported an average CPU frequency of 2773 MHz (6 samples)
[2025-06-06 11:52:57] 2025-06-06 09:52:21,524 | INFO     | ..............................
[2025-06-06 11:52:57] 2025-06-06 09:52:21,524 | INFO     | . Timing measurements:
[2025-06-06 11:52:57] 2025-06-06 09:52:21,524 | INFO     | . get job = 0 s
[2025-06-06 11:52:57] 2025-06-06 09:52:21,524 | INFO     | . initial setup = 1 s
[2025-06-06 11:52:57] 2025-06-06 09:52:21,524 | INFO     | . payload setup = 6 s
[2025-06-06 11:52:57] 2025-06-06 09:52:21,524 | INFO     | . stage-in = 0 s
[2025-06-06 11:52:57] 2025-06-06 09:52:21,524 | INFO     | . payload execution = 5251 s
[2025-06-06 11:52:57] 2025-06-06 09:52:21,524 | INFO     | . stage-out = 0 s
[2025-06-06 11:52:57] 2025-06-06 09:52:21,524 | INFO     | . log creation = 0 s
[2025-06-06 11:52:57] 2025-06-06 09:52:21,525 | INFO     | ..............................
[2025-06-06 11:52:57] 2025-06-06 09:52:21,584 | INFO     | 
[2025-06-06 11:52:57] 2025-06-06 09:52:21,584 | INFO     | job summary report
[2025-06-06 11:52:57] 2025-06-06 09:52:21,584 | INFO     | --------------------------------------------------
[2025-06-06 11:52:57] 2025-06-06 09:52:21,584 | INFO     | PanDA job id: 6681762897
[2025-06-06 11:52:57] 2025-06-06 09:52:21,584 | INFO     | task id: 45006595
[2025-06-06 11:52:57] 2025-06-06 09:52:21,584 | INFO     | errors: (none)
[2025-06-06 11:52:57] 2025-06-06 09:52:21,584 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 11:52:57] 2025-06-06 09:52:21,584 | INFO     | pilot state: finished 
[2025-06-06 11:52:57] 2025-06-06 09:52:21,584 | INFO     | transexitcode: 0
[2025-06-06 11:52:57] 2025-06-06 09:52:21,584 | INFO     | exeerrorcode: 0
[2025-06-06 11:52:57] 2025-06-06 09:52:21,584 | INFO     | exeerrordiag: 
[2025-06-06 11:52:57] 2025-06-06 09:52:21,584 | INFO     | exitcode: 0
[2025-06-06 11:52:57] 2025-06-06 09:52:21,585 | INFO     | exitmsg: OK
[2025-06-06 11:52:57] 2025-06-06 09:52:21,585 | INFO     | cpuconsumptiontime: 20013 s
[2025-06-06 11:52:57] 2025-06-06 09:52:21,585 | INFO     | nevents: 400
[2025-06-06 11:52:57] 2025-06-06 09:52:21,585 | INFO     | neventsw: 0
[2025-06-06 11:52:57] 2025-06-06 09:52:21,585 | INFO     | pid: 3060927
[2025-06-06 11:52:57] 2025-06-06 09:52:21,585 | INFO     | pgrp: 3060927
[2025-06-06 11:52:57] 2025-06-06 09:52:21,585 | INFO     | corecount: 4
[2025-06-06 11:52:57] 2025-06-06 09:52:21,585 | INFO     | event service: False
[2025-06-06 11:52:57] 2025-06-06 09:52:21,585 | INFO     | sizes: {0: 2397643, 4: 2397905, 11: 2397933, 5261: 2424419, 5262: 2433382, 5265: 2433438, 5270: 2433760}
[2025-06-06 11:52:57] 2025-06-06 09:52:21,585 | INFO     | --------------------------------------------------
[2025-06-06 11:52:57] 2025-06-06 09:52:21,585 | INFO     | 
[2025-06-06 11:52:57] 2025-06-06 09:52:21,585 | INFO     | executing command: ls -lF /scratch/boinc/var/slot76/slots/0
[2025-06-06 11:52:57] 2025-06-06 09:52:21,603 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 11:52:57] 2025-06-06 09:52:21,604 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 11:52:57] 2025-06-06 09:52:21,604 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 11:52:57] 2025-06-06 09:52:21,604 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 11:52:57] 2025-06-06 09:52:21,604 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 11:52:57] 2025-06-06 09:52:21,604 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 11:52:57] 2025-06-06 09:52:21,604 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 11:52:57] 2025-06-06 09:52:21,604 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 11:52:57] 2025-06-06 09:52:21,604 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 11:52:57] 2025-06-06 09:52:21,604 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 11:52:57] 2025-06-06 09:52:21,604 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 11:52:57] 2025-06-06 09:52:21,605 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 11:52:57] 2025-06-06 09:52:21,605 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 11:52:57] 2025-06-06 09:52:21,605 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 11:52:57] 2025-06-06 09:52:21,605 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 11:52:57] 2025-06-06 09:52:21,605 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 11:52:57] 2025-06-06 09:52:21,605 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 11:52:57] 2025-06-06 09:52:21,605 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 11:52:57] 2025-06-06 09:52:21,605 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 11:52:57] 2025-06-06 09:52:21,605 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 11:52:57] 2025-06-06 09:52:21,605 | INFO     | job 6681762897 has completed (purged errors)
[2025-06-06 11:52:57] 2025-06-06 09:52:21,605 | INFO     | overall cleanup function is called
[2025-06-06 11:52:57] 2025-06-06 09:52:22,614 | INFO     | --- collectZombieJob: --- 10, [3060927]
[2025-06-06 11:52:57] 2025-06-06 09:52:22,614 | INFO     | zombie collector waiting for pid 3060927
[2025-06-06 11:52:57] 2025-06-06 09:52:22,614 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 11:52:57] 2025-06-06 09:52:22,615 | INFO     | collected zombie processes
[2025-06-06 11:52:57] 2025-06-06 09:52:22,615 | INFO     | will attempt to kill all subprocesses of pid=3060927
[2025-06-06 11:52:57] 2025-06-06 09:52:22,959 | INFO     | process IDs to be killed: [3060927] (in reverse order)
[2025-06-06 11:52:57] 2025-06-06 09:52:23,085 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 11:52:57] 2025-06-06 09:52:23,086 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 11:52:57] 2025-06-06 09:52:23,099 | INFO     | did not find any defunct processes belonging to 3060927
[2025-06-06 11:52:57] 2025-06-06 09:52:23,110 | INFO     | did not find any defunct processes belonging to 3060927
[2025-06-06 11:52:57] 2025-06-06 09:52:23,110 | INFO     | ready for new job
[2025-06-06 11:52:57] 2025-06-06 09:52:23,111 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 11:52:57] 2025-06-06 09:52:23,112 | INFO     | ***************************************
[2025-06-06 11:52:57] 2025-06-06 09:52:23,112 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-06 11:52:57] 2025-06-06 09:52:23,112 | INFO     | ***************************************
[2025-06-06 11:52:57] 2025-06-06 09:52:23,112 | INFO     | 
[2025-06-06 11:52:57] 2025-06-06 09:52:23,117 | INFO     | architecture information:
[2025-06-06 11:52:57] 2025-06-06 09:52:23,117 | INFO     | executing command: cat /etc/os-release
[2025-06-06 11:52:57] 2025-06-06 09:52:23,130 | INFO     | cat /etc/os-release:
[2025-06-06 11:52:57] NAME="CentOS Linux"
[2025-06-06 11:52:57] VERSION="7 (Core)"
[2025-06-06 11:52:57] ID="centos"
[2025-06-06 11:52:57] ID_LIKE="rhel fedora"
[2025-06-06 11:52:57] VERSION_ID="7"
[2025-06-06 11:52:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 11:52:57] ANSI_COLOR="0;31"
[2025-06-06 11:52:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 11:52:57] HOME_URL="https://www.centos.org/"
[2025-06-06 11:52:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 11:52:57] 
[2025-06-06 11:52:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 11:52:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 11:52:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 11:52:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 11:52:57] 
[2025-06-06 11:52:57] 2025-06-06 09:52:23,130 | INFO     | ***************************************
[2025-06-06 11:52:57] 2025-06-06 09:52:23,633 | INFO     | executing command: df -mP /scratch/boinc/var/slot76/slots/0
[2025-06-06 11:52:57] 2025-06-06 09:52:23,648 | INFO     | sufficient remaining disk space (3356646965248 B)
[2025-06-06 11:52:57] 2025-06-06 09:52:23,648 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 11:52:57] 2025-06-06 09:52:23,648 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 11:52:57] 2025-06-06 09:52:23,648 | INFO     | update_server=False
[2025-06-06 11:52:57] 2025-06-06 09:52:23,648 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 11:52:57] 2025-06-06 09:52:23,649 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 11:52:57] 2025-06-06 09:52:23,649 | INFO     | aborting loop
[2025-06-06 11:52:57] 2025-06-06 09:52:24,279 | INFO     | all job control threads have been joined
[2025-06-06 11:52:57] 2025-06-06 09:52:24,567 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 11:52:57] 2025-06-06 09:52:24,653 | INFO     | [job] retrieve thread has finished
[2025-06-06 11:52:57] 2025-06-06 09:52:24,654 | INFO     | [job] job monitor thread has finished
[2025-06-06 11:52:57] 2025-06-06 09:52:24,722 | INFO     | all data control threads have been joined
[2025-06-06 11:52:57] 2025-06-06 09:52:24,761 | INFO     | all payload control threads have been joined
[2025-06-06 11:52:57] 2025-06-06 09:52:25,285 | INFO     | [job] control thread has finished
[2025-06-06 11:52:57] 2025-06-06 09:52:25,330 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 11:52:57] 2025-06-06 09:52:25,422 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 11:52:57] 2025-06-06 09:52:25,480 | INFO     | [job] validate thread has finished
[2025-06-06 11:52:57] 2025-06-06 09:52:25,573 | INFO     | [data] copytool_in thread has finished
[2025-06-06 11:52:57] 2025-06-06 09:52:25,660 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 11:52:57] 2025-06-06 09:52:25,728 | INFO     | [data] control thread has finished
[2025-06-06 11:52:57] 2025-06-06 09:52:25,767 | INFO     | [payload] control thread has finished
[2025-06-06 11:52:57] 2025-06-06 09:52:25,768 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 11:52:57] 2025-06-06 09:52:26,129 | INFO     | [payload] failed_post thread has finished
[2025-06-06 11:52:57] 2025-06-06 09:52:26,203 | INFO     | [payload] validate_post thread has finished
[2025-06-06 11:52:57] 2025-06-06 09:52:26,573 | INFO     | [data] copytool_out thread has finished
[2025-06-06 11:52:57] 2025-06-06 09:52:26,595 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 11:52:57] 2025-06-06 09:52:26,825 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 11:52:57] 2025-06-06 09:52:27,600 | INFO     | [job] queue monitor thread has finished
[2025-06-06 11:52:57] 2025-06-06 09:52:30,831 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 11:52:57] 2025-06-06 09:52:32,531 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22896947517248)>', '<ExcThread(monitor, started 22896709699328)>']
[2025-06-06 11:52:57] 2025-06-06 09:52:37,556 | INFO     | all workflow threads have been joined
[2025-06-06 11:52:57] 2025-06-06 09:52:37,556 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 11:52:57] 2025-06-06 09:52:37,557 | INFO     | traces error code: 0
[2025-06-06 11:52:57] 2025-06-06 09:52:37,557 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 11:52:57] 2025-06-06 09:52:53,423 | INFO     | PID=3053529 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-06 11:52:57] 2025-06-06 09:52:53,424 | INFO     | .. there are 5 such processes running
[2025-06-06 11:52:57] 2025-06-06 09:52:53,424 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 11:52:57] 2025-06-06 09:52:53,424 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 11:52:57] 2025-06-06 09:52:53,424 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 11:52:57] 2025-06-06 09:52:53,424 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 11:52:57] 2025-06-06 09:52:53,424 | INFO     | [monitor] control thread has ended
[2025-06-06 11:52:57] 2025-06-06 09:52:53,570 [wrapper] ==== pilot stdout END ====
[2025-06-06 11:52:57] 2025-06-06 09:52:53,573 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 11:52:57] 2025-06-06 09:52:53,576 [wrapper] pilotpid: 3053529
[2025-06-06 11:52:57] 2025-06-06 09:52:53,579 [wrapper] Pilot exit status: 0
[2025-06-06 11:52:57] 2025-06-06 09:52:53,590 [wrapper] pandaids: 6681762897
[2025-06-06 11:52:57] 2025-06-06 09:52:53,680 [wrapper] cleanup supervisor_pilot 3235587 3053530
[2025-06-06 11:52:57] 2025-06-06 09:52:53,683 [wrapper] Test setup, not cleaning
[2025-06-06 11:52:57] 2025-06-06 09:52:53,686 [wrapper] apfmon messages muted
[2025-06-06 11:52:57] 2025-06-06 09:52:53,689 [wrapper] ==== wrapper stdout END ====
[2025-06-06 11:52:57] 2025-06-06 09:52:53,691 [wrapper] ==== wrapper stderr END ====
[2025-06-06 11:52:57]  *** Error codes and diagnostics ***
[2025-06-06 11:52:57]     "exeErrorCode": 0,
[2025-06-06 11:52:57]     "exeErrorDiag": "",
[2025-06-06 11:52:57]     "pilotErrorCode": 0,
[2025-06-06 11:52:57]     "pilotErrorDiag": "",
[2025-06-06 11:52:57]  *** Listing of results directory ***
[2025-06-06 11:52:57] total 393448
[2025-06-06 11:52:57] -rw-r--r-- 1 boinc boinc      5112 Jun  6 08:23 queuedata.json
[2025-06-06 11:52:57] -rw-r--r-- 1 boinc boinc    529402 Jun  6 08:23 pilot3.tar.gz
[2025-06-06 11:52:57] -rwx------ 1 boinc boinc     37140 Jun  6 08:24 runpilot2-wrapper.sh
[2025-06-06 11:52:57] -rw-r--r-- 1 boinc boinc       100 Jun  6 10:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 11:52:57] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 10:02 run_atlas
[2025-06-06 11:52:57] -rw-r--r-- 1 boinc boinc       105 Jun  6 10:02 job.xml
[2025-06-06 11:52:57] -rw-r--r-- 1 boinc boinc      6687 Jun  6 10:24 init_data.xml
[2025-06-06 11:52:57] -rw-r--r-- 2 boinc boinc 216197373 Jun  6 10:24 EVNT.45006593._001963.pool.root.1
[2025-06-06 11:52:57] -rw-r--r-- 2 boinc boinc     15095 Jun  6 10:24 start_atlas.sh
[2025-06-06 11:52:57] drwxrwx--x 2 boinc boinc      4096 Jun  6 10:24 shared
[2025-06-06 11:52:57] -rw-r--r-- 2 boinc boinc    541923 Jun  6 10:24 input.tar.gz
[2025-06-06 11:52:57] -rw-r--r-- 1 boinc boinc         0 Jun  6 10:24 boinc_lockfile
[2025-06-06 11:52:57] -rw-r--r-- 1 boinc boinc      2524 Jun  6 10:24 pandaJob.out
[2025-06-06 11:52:57] -rw------- 1 boinc boinc    987967 Jun  6 10:24 agis_schedconf.cvmfs.json
[2025-06-06 11:52:57] -rw------- 1 boinc boinc   1598969 Jun  6 10:24 agis_ddmendpoints.agis.ALL.json
[2025-06-06 11:52:57] drwx------ 4 boinc boinc      4096 Jun  6 10:24 pilot3
[2025-06-06 11:52:57] -rw------- 1 boinc boinc 181253648 Jun  6 11:51 HITS.45006595._057134.pool.root.1
[2025-06-06 11:52:57] -rw-r--r-- 1 boinc boinc       528 Jun  6 11:51 boinc_task_state.xml
[2025-06-06 11:52:57] -rw------- 1 boinc boinc      1038 Jun  6 11:52 memory_monitor_summary.json
[2025-06-06 11:52:57] -rw------- 1 boinc boinc        95 Jun  6 11:52 pilot_heartbeat.json
[2025-06-06 11:52:57] -rw------- 1 boinc boinc    253378 Jun  6 11:52 log.45006595._057134.job.log.tgz.1
[2025-06-06 11:52:57] -rw------- 1 boinc boinc      7704 Jun  6 11:52 heartbeat.json
[2025-06-06 11:52:57] -rw-r--r-- 1 boinc boinc      8192 Jun  6 11:52 boinc_mmap_file
[2025-06-06 11:52:57] -rw-r--r-- 1 boinc boinc        26 Jun  6 11:52 wrapper_checkpoint.txt
[2025-06-06 11:52:57] -rw------- 1 boinc boinc       822 Jun  6 11:52 pilotlog.txt
[2025-06-06 11:52:57] -rw------- 1 boinc boinc    517485 Jun  6 11:52 log.45006595._057134.job.log.1
[2025-06-06 11:52:57] -rw------- 1 boinc boinc       357 Jun  6 11:52 output.list
[2025-06-06 11:52:57] -rw-r--r-- 1 boinc boinc       620 Jun  6 11:52 runtime_log
[2025-06-06 11:52:57] -rw------- 1 boinc boinc    788480 Jun  6 11:52 result.tar.gz
[2025-06-06 11:52:57] -rw-r--r-- 1 boinc boinc      9026 Jun  6 11:52 runtime_log.err
[2025-06-06 11:52:57] -rw------- 1 boinc boinc       659 Jun  6 11:52 9d7MDmWgfh7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDme6nKDmvfNz0n.diag
[2025-06-06 11:52:57] -rw-r--r-- 1 boinc boinc     21613 Jun  6 11:52 stderr.txt
[2025-06-06 11:52:57] HITS file was successfully produced:
[2025-06-06 11:52:57] -rw------- 1 boinc boinc 181253648 Jun  6 11:51 shared/HITS.pool.root.1
[2025-06-06 11:52:57]  *** Contents of shared directory: ***
[2025-06-06 11:52:57] total 389468
[2025-06-06 11:52:57] -rw-r--r-- 2 boinc boinc 216197373 Jun  6 10:24 ATLAS.root_0
[2025-06-06 11:52:57] -rw-r--r-- 2 boinc boinc     15095 Jun  6 10:24 start_atlas.sh
[2025-06-06 11:52:57] -rw-r--r-- 2 boinc boinc    541923 Jun  6 10:24 input.tar.gz
[2025-06-06 11:52:57] -rw------- 1 boinc boinc 181253648 Jun  6 11:51 HITS.pool.root.1
[2025-06-06 11:52:57] -rw------- 1 boinc boinc    788480 Jun  6 11:52 result.tar.gz
11:52:59 (3049607): run_atlas exited; CPU time 20157.366723
11:52:59 (3049607): called boinc_finish(0)

</stderr_txt>
]]>

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