Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:38:19 (23005): wrapper (7.7.26015): starting
00:38:19 (23005): wrapper: running run_atlas (--nthreads 12)
[2025-06-06 00:38:19] Arguments: --nthreads 12
[2025-06-06 00:38:19] Threads: 12
[2025-06-06 00:38:19] Checking for CVMFS
[2025-06-06 00:38:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 00:38:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 00:38:19] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 00:38:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 00:38:19] 2.11.2.0 2949 38092 84156 146843 1 58 14329797 20275201 1 130560 0 16114547 99.986 6006710 7371 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-06 00:38:19] CVMFS is ok
[2025-06-06 00:38:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 00:38:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 00:38:19] Further information can be found at the LHC@home message board.
[2025-06-06 00:38:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 00:38:19] Checking for apptainer binary...
[2025-06-06 00:38:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 00:38:19] Running /usr/bin/apptainer --version
[2025-06-06 00:38:19] apptainer version 1.3.2-1.el7
[2025-06-06 00:38:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 00:38:20] c-205-13.aglt2.org
[2025-06-06 00:38:20] apptainer works
[2025-06-06 00:38:20] Set ATHENA_PROC_NUMBER=12
[2025-06-06 00:38:20] Set ATHENA_CORE_NUMBER=12
[2025-06-06 00:38:20] Starting ATLAS job with PandaID=6667667548
[2025-06-06 00:38:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 02:12:21]  *** The last 200 lines of the pilot log: ***
[2025-06-06 02:12:21]  lfn=log.44871837._074460.job.log.tgz.1
[2025-06-06 02:12:21]  mtime=0
[2025-06-06 02:12:21]  protocol_id=None
[2025-06-06 02:12:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 02:12:21]  replicas=None
[2025-06-06 02:12:21]  scope=mc23_13p6TeV
[2025-06-06 02:12:21]  status=None
[2025-06-06 02:12:21]  status_code=0
[2025-06-06 02:12:21]  storage_token=
[2025-06-06 02:12:21]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6667667548/log.44871837._074460.job.log.tgz.1
[2025-06-06 02:12:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/64/00/log.44871837._074460.job.log.tgz.1
[2025-06-06 02:12:21]  workdir=None
[2025-06-06 02:12:21] ]
[2025-06-06 02:12:21] 2025-06-06 06:11:43,265 | INFO     | transferring file log.44871837._074460.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6667667548/log.44871837._074460.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-06 02:12:21] 2025-06-06 06:11:43,265 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6667667548/log.44871837._074460.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._074460.job
[2025-06-06 02:12:21] 2025-06-06 06:11:43,286 | INFO     | adding to output.list: log.44871837._074460.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/64/00/log.44871837._074460.job.log.tg
[2025-06-06 02:12:21] 2025-06-06 06:11:43,287 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 02:12:21] 2025-06-06 06:11:43,287 | INFO     | summary of transferred files:
[2025-06-06 02:12:21] 2025-06-06 06:11:43,287 | INFO     |  -- lfn=log.44871837._074460.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 02:12:21] 2025-06-06 06:11:43,288 | INFO     | stage-out finished correctly
[2025-06-06 02:12:21] 2025-06-06 06:11:43,554 | INFO     | monitor loop #416: job 0:6667667548 is in state 'finished'
[2025-06-06 02:12:21] 2025-06-06 06:11:43,554 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 02:12:21] 2025-06-06 06:11:43,912 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 02:12:21] 2025-06-06 06:11:43,996 | INFO     | job 6667667548 has state=finished
[2025-06-06 02:12:21] 2025-06-06 06:11:43,996 | INFO     | preparing for final server update for job 6667667548 in state='finished'
[2025-06-06 02:12:21] 2025-06-06 06:11:43,997 | INFO     | this job has now completed (state=finished)
[2025-06-06 02:12:21] 2025-06-06 06:11:43,997 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 02:12:21] 2025-06-06 06:11:43,997 | INFO     | log transfer has been attempted: DONE
[2025-06-06 02:12:21] 2025-06-06 06:11:43,997 | INFO     | job 6667667548 has finished - writing final server update
[2025-06-06 02:12:21] 2025-06-06 06:11:43,998 | INFO     | total number of processed events: 400 (read)
[2025-06-06 02:12:21] 2025-06-06 06:11:43,999 | INFO     | executing command: lscpu
[2025-06-06 02:12:21] 2025-06-06 06:11:44,024 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 02:12:21] 2025-06-06 06:11:46,057 | INFO     | monitor loop #417: job 0:6667667548 is in state 'finished'
[2025-06-06 02:12:21] 2025-06-06 06:11:46,057 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 02:12:21] 2025-06-06 06:11:48,561 | INFO     | monitor loop #418: job 0:6667667548 is in state 'finished'
[2025-06-06 02:12:21] 2025-06-06 06:11:48,561 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 02:12:21] 2025-06-06 06:11:48,635 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-06 02:12:21] 2025-06-06 06:11:48,639 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-06-06 02:12:21] 2025-06-06 06:11:48,641 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6667667548/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 02:12:21] 2025-06-06 06:11:48,641 | INFO     | extracted standard info from prmon json
[2025-06-06 02:12:21] 2025-06-06 06:11:48,641 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 02:12:21] 2025-06-06 06:11:48,641 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 02:12:21] 2025-06-06 06:11:48,642 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 02:12:21] 2025-06-06 06:11:48,642 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 02:12:21] 2025-06-06 06:11:48,644 | INFO     | fitting pss+swap vs Time
[2025-06-06 02:12:21] 2025-06-06 06:11:48,644 | INFO     | sum of square deviations: 190403570.0
[2025-06-06 02:12:21] 2025-06-06 06:11:48,644 | INFO     | sum of deviations: -11101116659.000002
[2025-06-06 02:12:21] 2025-06-06 06:11:48,644 | INFO     | mean x: 1749187612.0
[2025-06-06 02:12:21] 2025-06-06 06:11:48,645 | INFO     | mean y: 2777239.9294117647
[2025-06-06 02:12:21] 2025-06-06 06:11:48,645 | INFO     | -- intersect: 101985821671.76245
[2025-06-06 02:12:21] 2025-06-06 06:11:48,645 | INFO     | intersect: 101985821671.76245
[2025-06-06 02:12:21] 2025-06-06 06:11:48,645 | INFO     | chi2: 0.09370564988037001
[2025-06-06 02:12:21] 2025-06-06 06:11:48,645 | INFO     | -- intersect: 101985821671.76245
[2025-06-06 02:12:21] 2025-06-06 06:11:48,645 | INFO     | current memory leak: -58.30 B/s (using 85 data points, chi2=0.09)
[2025-06-06 02:12:21] 2025-06-06 06:11:48,646 | INFO     | could have reported an average CPU frequency of 1996 MHz (7 samples)
[2025-06-06 02:12:21] 2025-06-06 06:11:48,646 | INFO     | ..............................
[2025-06-06 02:12:21] 2025-06-06 06:11:48,646 | INFO     | . Timing measurements:
[2025-06-06 02:12:21] 2025-06-06 06:11:48,646 | INFO     | . get job = 0 s
[2025-06-06 02:12:21] 2025-06-06 06:11:48,646 | INFO     | . initial setup = 2 s
[2025-06-06 02:12:21] 2025-06-06 06:11:48,646 | INFO     | . payload setup = 9 s
[2025-06-06 02:12:21] 2025-06-06 06:11:48,646 | INFO     | . stage-in = 0 s
[2025-06-06 02:12:21] 2025-06-06 06:11:48,646 | INFO     | . payload execution = 5557 s
[2025-06-06 02:12:21] 2025-06-06 06:11:48,646 | INFO     | . stage-out = 0 s
[2025-06-06 02:12:21] 2025-06-06 06:11:48,647 | INFO     | . log creation = 0 s
[2025-06-06 02:12:21] 2025-06-06 06:11:48,647 | INFO     | ..............................
[2025-06-06 02:12:21] 2025-06-06 06:11:48,746 | INFO     | 
[2025-06-06 02:12:21] 2025-06-06 06:11:48,747 | INFO     | job summary report
[2025-06-06 02:12:21] 2025-06-06 06:11:48,747 | INFO     | --------------------------------------------------
[2025-06-06 02:12:21] 2025-06-06 06:11:48,747 | INFO     | PanDA job id: 6667667548
[2025-06-06 02:12:21] 2025-06-06 06:11:48,747 | INFO     | task id: 44871837
[2025-06-06 02:12:21] 2025-06-06 06:11:48,747 | INFO     | errors: (none)
[2025-06-06 02:12:21] 2025-06-06 06:11:48,747 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 02:12:21] 2025-06-06 06:11:48,748 | INFO     | pilot state: finished 
[2025-06-06 02:12:21] 2025-06-06 06:11:48,748 | INFO     | transexitcode: 0
[2025-06-06 02:12:21] 2025-06-06 06:11:48,748 | INFO     | exeerrorcode: 0
[2025-06-06 02:12:21] 2025-06-06 06:11:48,748 | INFO     | exeerrordiag: 
[2025-06-06 02:12:21] 2025-06-06 06:11:48,748 | INFO     | exitcode: 0
[2025-06-06 02:12:21] 2025-06-06 06:11:48,748 | INFO     | exitmsg: OK
[2025-06-06 02:12:21] 2025-06-06 06:11:48,748 | INFO     | cpuconsumptiontime: 60244 s
[2025-06-06 02:12:21] 2025-06-06 06:11:48,749 | INFO     | nevents: 400
[2025-06-06 02:12:21] 2025-06-06 06:11:48,749 | INFO     | neventsw: 0
[2025-06-06 02:12:21] 2025-06-06 06:11:48,749 | INFO     | pid: 597
[2025-06-06 02:12:21] 2025-06-06 06:11:48,749 | INFO     | pgrp: 597
[2025-06-06 02:12:21] 2025-06-06 06:11:48,749 | INFO     | corecount: 12
[2025-06-06 02:12:21] 2025-06-06 06:11:48,749 | INFO     | event service: False
[2025-06-06 02:12:21] 2025-06-06 06:11:48,750 | INFO     | sizes: {0: 2397506, 1: 2397761, 6: 2398023, 12: 2398051, 5571: 2424745, 5573: 2433686, 5574: 2433870, 5579: 2434064}
[2025-06-06 02:12:21] 2025-06-06 06:11:48,750 | INFO     | --------------------------------------------------
[2025-06-06 02:12:21] 2025-06-06 06:11:48,750 | INFO     | 
[2025-06-06 02:12:21] 2025-06-06 06:11:48,750 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-06 02:12:21] 2025-06-06 06:11:48,774 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 02:12:21] 2025-06-06 06:11:48,775 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 02:12:21] 2025-06-06 06:11:48,775 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 02:12:21] 2025-06-06 06:11:48,775 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 02:12:21] 2025-06-06 06:11:48,775 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 02:12:21] 2025-06-06 06:11:48,775 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 02:12:21] 2025-06-06 06:11:48,776 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 02:12:21] 2025-06-06 06:11:48,776 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 02:12:21] 2025-06-06 06:11:48,776 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 02:12:21] 2025-06-06 06:11:48,776 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 02:12:21] 2025-06-06 06:11:48,776 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 02:12:21] 2025-06-06 06:11:48,776 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 02:12:21] 2025-06-06 06:11:48,777 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 02:12:21] 2025-06-06 06:11:48,777 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 02:12:21] 2025-06-06 06:11:48,777 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 02:12:21] 2025-06-06 06:11:48,777 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 02:12:21] 2025-06-06 06:11:48,777 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 02:12:21] 2025-06-06 06:11:48,777 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 02:12:21] 2025-06-06 06:11:48,778 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 02:12:21] 2025-06-06 06:11:48,778 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 02:12:21] 2025-06-06 06:11:48,778 | INFO     | job 6667667548 has completed (purged errors)
[2025-06-06 02:12:21] 2025-06-06 06:11:48,778 | INFO     | overall cleanup function is called
[2025-06-06 02:12:21] 2025-06-06 06:11:49,393 | INFO     | PID=26641 has CPU usage=7.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-06 02:12:21] 2025-06-06 06:11:49,786 | INFO     | --- collectZombieJob: --- 10, [597]
[2025-06-06 02:12:21] 2025-06-06 06:11:49,786 | INFO     | zombie collector waiting for pid 597
[2025-06-06 02:12:21] 2025-06-06 06:11:49,787 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 02:12:21] 2025-06-06 06:11:49,787 | INFO     | collected zombie processes
[2025-06-06 02:12:21] 2025-06-06 06:11:49,787 | INFO     | will attempt to kill all subprocesses of pid=597
[2025-06-06 02:12:21] 2025-06-06 06:11:49,875 | INFO     | process IDs to be killed: [597] (in reverse order)
[2025-06-06 02:12:21] 2025-06-06 06:11:49,927 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 02:12:21] 2025-06-06 06:11:49,927 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 02:12:21] 2025-06-06 06:11:49,930 | INFO     | did not find any defunct processes belonging to 597
[2025-06-06 02:12:21] 2025-06-06 06:11:49,932 | INFO     | did not find any defunct processes belonging to 597
[2025-06-06 02:12:21] 2025-06-06 06:11:49,933 | INFO     | ready for new job
[2025-06-06 02:12:21] 2025-06-06 06:11:49,933 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 02:12:21] 2025-06-06 06:11:49,934 | INFO     | ***************************************
[2025-06-06 02:12:21] 2025-06-06 06:11:49,934 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-06 02:12:21] 2025-06-06 06:11:49,934 | INFO     | ***************************************
[2025-06-06 02:12:21] 2025-06-06 06:11:49,934 | INFO     | 
[2025-06-06 02:12:21] 2025-06-06 06:11:49,935 | INFO     | architecture information:
[2025-06-06 02:12:21] 2025-06-06 06:11:49,935 | INFO     | executing command: cat /etc/os-release
[2025-06-06 02:12:21] 2025-06-06 06:11:49,950 | INFO     | cat /etc/os-release:
[2025-06-06 02:12:21] NAME="CentOS Linux"
[2025-06-06 02:12:21] VERSION="7 (Core)"
[2025-06-06 02:12:21] ID="centos"
[2025-06-06 02:12:21] ID_LIKE="rhel fedora"
[2025-06-06 02:12:21] VERSION_ID="7"
[2025-06-06 02:12:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 02:12:21] ANSI_COLOR="0;31"
[2025-06-06 02:12:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 02:12:21] HOME_URL="https://www.centos.org/"
[2025-06-06 02:12:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 02:12:21] 
[2025-06-06 02:12:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 02:12:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 02:12:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 02:12:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 02:12:21] 
[2025-06-06 02:12:21] 2025-06-06 06:11:49,950 | INFO     | ***************************************
[2025-06-06 02:12:21] 2025-06-06 06:11:50,453 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-06 02:12:21] 2025-06-06 06:11:50,470 | INFO     | sufficient remaining disk space (29387390976 B)
[2025-06-06 02:12:21] 2025-06-06 06:11:50,470 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 02:12:21] 2025-06-06 06:11:50,471 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 02:12:21] 2025-06-06 06:11:50,471 | INFO     | update_server=False
[2025-06-06 02:12:21] 2025-06-06 06:11:50,471 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 02:12:21] 2025-06-06 06:11:50,471 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 02:12:21] 2025-06-06 06:11:50,472 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 02:12:21] 2025-06-06 06:11:50,472 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 02:12:21] 2025-06-06 06:11:50,473 | INFO     | aborting loop
[2025-06-06 02:12:21] 2025-06-06 06:11:50,782 | INFO     | all data control threads have been joined
[2025-06-06 02:12:21] 2025-06-06 06:11:50,999 | INFO     | all job control threads have been joined
[2025-06-06 02:12:21] 2025-06-06 06:11:51,383 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 02:12:21] 2025-06-06 06:11:51,477 | INFO     | [job] retrieve thread has finished
[2025-06-06 02:12:21] 2025-06-06 06:11:51,477 | INFO     | [job] queue monitor thread has finished
[2025-06-06 02:12:21] 2025-06-06 06:11:51,478 | INFO     | [job] job monitor thread has finished
[2025-06-06 02:12:21] 2025-06-06 06:11:51,570 | INFO     | [job] validate thread has finished
[2025-06-06 02:12:21] 2025-06-06 06:11:51,675 | INFO     | [payload] validate_post thread has finished
[2025-06-06 02:12:21] 2025-06-06 06:11:51,755 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 02:12:21] 2025-06-06 06:11:51,787 | INFO     | [data] control thread has finished
[2025-06-06 02:12:21] 2025-06-06 06:11:51,804 | INFO     | all payload control threads have been joined
[2025-06-06 02:12:21] 2025-06-06 06:11:51,818 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 02:12:21] 2025-06-06 06:11:52,004 | INFO     | [job] control thread has finished
[2025-06-06 02:12:21] 2025-06-06 06:11:52,134 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 02:12:21] 2025-06-06 06:11:52,207 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 02:12:21] 2025-06-06 06:11:52,224 | INFO     | [data] copytool_in thread has finished
[2025-06-06 02:12:21] 2025-06-06 06:11:52,810 | INFO     | [payload] control thread has finished
[2025-06-06 02:12:21] 2025-06-06 06:11:52,974 | INFO     | [payload] failed_post thread has finished
[2025-06-06 02:12:21] 2025-06-06 06:11:53,388 | INFO     | [data] copytool_out thread has finished
[2025-06-06 02:12:21] 2025-06-06 06:11:54,478 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 02:12:21] 2025-06-06 06:11:54,769 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140099531929408)>', '<ExcThread(monitor, started 140099232700160)>']
[2025-06-06 02:12:21] 2025-06-06 06:11:59,794 | INFO     | all workflow threads have been joined
[2025-06-06 02:12:21] 2025-06-06 06:11:59,794 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 02:12:21] 2025-06-06 06:11:59,795 | INFO     | traces error code: 0
[2025-06-06 02:12:21] 2025-06-06 06:11:59,795 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 02:12:21] 2025-06-06 06:12:20,471 | INFO     | 5599s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-06 02:12:21] 2025-06-06 06:12:21,591 | INFO     | PID=26641 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-06 02:12:21] 2025-06-06 06:12:21,591 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 02:12:21] 2025-06-06 06:12:21,591 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 02:12:21] 2025-06-06 06:12:21,591 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 02:12:21] 2025-06-06 06:12:21,591 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 02:12:21] 2025-06-06 06:12:21,591 | INFO     | [monitor] control thread has ended
[2025-06-06 02:12:21] 2025-06-06 06:12:21,675 [wrapper] ==== pilot stdout END ====
[2025-06-06 02:12:21] 2025-06-06 06:12:21,679 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 02:12:21] 2025-06-06 06:12:21,683 [wrapper] pilotpid: 26641
[2025-06-06 02:12:21] 2025-06-06 06:12:21,687 [wrapper] Pilot exit status: 0
[2025-06-06 02:12:21] 2025-06-06 06:12:21,702 [wrapper] pandaids: 6667667548
[2025-06-06 02:12:21] 2025-06-06 06:12:21,739 [wrapper] cleanup supervisor_pilot 29593 26642
[2025-06-06 02:12:21] 2025-06-06 06:12:21,743 [wrapper] Test setup, not cleaning
[2025-06-06 02:12:21] 2025-06-06 06:12:21,747 [wrapper] apfmon messages muted
[2025-06-06 02:12:21] 2025-06-06 06:12:21,751 [wrapper] ==== wrapper stdout END ====
[2025-06-06 02:12:21] 2025-06-06 06:12:21,755 [wrapper] ==== wrapper stderr END ====
[2025-06-06 02:12:21]  *** Error codes and diagnostics ***
[2025-06-06 02:12:21]     "exeErrorCode": 0,
[2025-06-06 02:12:21]     "exeErrorDiag": "",
[2025-06-06 02:12:21]     "pilotErrorCode": 0,
[2025-06-06 02:12:21]     "pilotErrorDiag": "",
[2025-06-06 02:12:21]  *** Listing of results directory ***
[2025-06-06 02:12:21] total 414028
[2025-06-06 02:12:21] -rw-r--r-- 1 boincer umatlas    529402 Jun  6 00:19 pilot3.tar.gz
[2025-06-06 02:12:21] -rwx------ 1 boincer umatlas     37140 Jun  6 00:37 runpilot2-wrapper.sh
[2025-06-06 02:12:21] -rw-r--r-- 1 boincer umatlas      5112 Jun  6 00:37 queuedata.json
[2025-06-06 02:12:21] -rw-r--r-- 1 boincer umatlas       100 Jun  6 00:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 02:12:21] -rwxr-xr-x 1 boincer umatlas      7986 Jun  6 00:38 run_atlas
[2025-06-06 02:12:21] -rw-r--r-- 1 boincer umatlas       105 Jun  6 00:38 job.xml
[2025-06-06 02:12:21] -rw-r--r-- 2 boincer umatlas 224373790 Jun  6 00:38 EVNT.44871834._002919.pool.root.1
[2025-06-06 02:12:21] -rw-r--r-- 2 boincer umatlas     15095 Jun  6 00:38 start_atlas.sh
[2025-06-06 02:12:21] drwxrwx--x 2 boincer umatlas      4096 Jun  6 00:38 shared
[2025-06-06 02:12:21] -rw-r--r-- 2 boincer umatlas    541906 Jun  6 00:38 input.tar.gz
[2025-06-06 02:12:21] -rw-r--r-- 1 boincer umatlas         0 Jun  6 00:38 boinc_lockfile
[2025-06-06 02:12:21] -rw-r--r-- 1 boincer umatlas      2559 Jun  6 00:38 pandaJob.out
[2025-06-06 02:12:21] -rw------- 1 boincer umatlas    988125 Jun  6 00:38 agis_schedconf.cvmfs.json
[2025-06-06 02:12:21] -rw------- 1 boincer umatlas   1598969 Jun  6 00:38 agis_ddmendpoints.agis.ALL.json
[2025-06-06 02:12:21] drwx------ 4 boincer umatlas      4096 Jun  6 00:38 pilot3
[2025-06-06 02:12:21] -rw-r--r-- 1 boincer umatlas      5867 Jun  6 02:10 init_data.xml
[2025-06-06 02:12:21] -rw------- 1 boincer umatlas 193889749 Jun  6 02:11 HITS.44871837._074460.pool.root.1
[2025-06-06 02:12:21] -rw-r--r-- 1 boincer umatlas       529 Jun  6 02:11 boinc_task_state.xml
[2025-06-06 02:12:21] -rw------- 1 boincer umatlas      1046 Jun  6 02:11 memory_monitor_summary.json
[2025-06-06 02:12:21] -rw------- 1 boincer umatlas    376201 Jun  6 02:11 log.44871837._074460.job.log.tgz.1
[2025-06-06 02:12:21] -rw------- 1 boincer umatlas        95 Jun  6 02:11 pilot_heartbeat.json
[2025-06-06 02:12:21] -rw------- 1 boincer umatlas      7783 Jun  6 02:11 heartbeat.json
[2025-06-06 02:12:21] -rw-r--r-- 1 boincer umatlas      8192 Jun  6 02:12 boinc_mmap_file
[2025-06-06 02:12:21] -rw-r--r-- 1 boincer umatlas        27 Jun  6 02:12 wrapper_checkpoint.txt
[2025-06-06 02:12:21] -rw------- 1 boincer umatlas       860 Jun  6 02:12 pilotlog.txt
[2025-06-06 02:12:21] -rw------- 1 boincer umatlas    526012 Jun  6 02:12 log.44871837._074460.job.log.1
[2025-06-06 02:12:21] -rw------- 1 boincer umatlas       357 Jun  6 02:12 output.list
[2025-06-06 02:12:21] -rw-r--r-- 1 boincer umatlas       620 Jun  6 02:12 runtime_log
[2025-06-06 02:12:21] -rw------- 1 boincer umatlas    921600 Jun  6 02:12 result.tar.gz
[2025-06-06 02:12:21] -rw------- 1 boincer umatlas       659 Jun  6 02:12 sRhMDm70dh7n9Rq4apOajLDm4fhM0noT9bVof3QYDmf5aKDmV0q14n.diag
[2025-06-06 02:12:21] -rw-r--r-- 1 boincer umatlas      8662 Jun  6 02:12 runtime_log.err
[2025-06-06 02:12:21] -rw-r--r-- 1 boincer umatlas     21792 Jun  6 02:12 stderr.txt
[2025-06-06 02:12:21] HITS file was successfully produced:
[2025-06-06 02:12:21] -rw------- 1 boincer umatlas 193889749 Jun  6 02:11 shared/HITS.pool.root.1
[2025-06-06 02:12:21]  *** Contents of shared directory: ***
[2025-06-06 02:12:21] total 409920
[2025-06-06 02:12:21] -rw-r--r-- 2 boincer umatlas 224373790 Jun  6 00:38 ATLAS.root_0
[2025-06-06 02:12:21] -rw-r--r-- 2 boincer umatlas     15095 Jun  6 00:38 start_atlas.sh
[2025-06-06 02:12:21] -rw-r--r-- 2 boincer umatlas    541906 Jun  6 00:38 input.tar.gz
[2025-06-06 02:12:21] -rw------- 1 boincer umatlas 193889749 Jun  6 02:11 HITS.pool.root.1
[2025-06-06 02:12:21] -rw------- 1 boincer umatlas    921600 Jun  6 02:12 result.tar.gz
02:12:22 (23005): run_atlas exited; CPU time 60219.671362
02:12:22 (23005): called boinc_finish(0)

</stderr_txt>
]]>

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