Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:13:11 (32648): wrapper (7.7.26015): starting
10:13:11 (32648): wrapper: running run_atlas (--nthreads 8)
[2025-06-06 10:13:11] Arguments: --nthreads 8
[2025-06-06 10:13:11] Threads: 8
[2025-06-06 10:13:11] Checking for CVMFS
[2025-06-06 10:13:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 10:13:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 10:13:12] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 10:13:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 10:13:13] 2.11.2.0 22848 35959 101272 146847 1 16 22443981 25165825 3901 130560 0 19189476 99.838 19148330 2573 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-06 10:13:13] CVMFS is ok
[2025-06-06 10:13:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 10:13:13] Checking for apptainer binary...
[2025-06-06 10:13:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 10:13:13] Running /usr/bin/apptainer --version
[2025-06-06 10:13:13] apptainer version 1.3.2-1.el7
[2025-06-06 10:13:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 10:41:37] cg-vwn482.simple-grid.lan
[2025-06-06 10:41:37] apptainer works
[2025-06-06 10:41:37] Set ATHENA_PROC_NUMBER=8
[2025-06-06 10:41:37] Set ATHENA_CORE_NUMBER=8
[2025-06-06 10:41:37] Starting ATLAS job with PandaID=6668688930
[2025-06-06 10:41:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 15:15:50]  *** The last 200 lines of the pilot log: ***
[2025-06-06 15:15:50] 2025-06-06 13:14:09,588 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6668688930/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 15:15:50] 2025-06-06 13:14:09,589 | INFO     | extracted standard info from prmon json
[2025-06-06 15:15:50] 2025-06-06 13:14:09,589 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 15:15:50] 2025-06-06 13:14:09,589 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 15:15:50] 2025-06-06 13:14:09,589 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 15:15:50] 2025-06-06 13:14:09,589 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 15:15:50] 2025-06-06 13:14:09,594 | INFO     | fitting pss+swap vs Time
[2025-06-06 15:15:50] 2025-06-06 13:14:09,595 | INFO     | sum of square deviations: 5770452380.0
[2025-06-06 15:15:50] 2025-06-06 13:14:09,597 | INFO     | sum of deviations: -87093339382.0
[2025-06-06 15:15:50] 2025-06-06 13:14:09,597 | INFO     | mean x: 1749207489.0
[2025-06-06 15:15:50] 2025-06-06 13:14:09,597 | INFO     | mean y: 2567533.0754716983
[2025-06-06 15:15:50] 2025-06-06 13:14:09,597 | INFO     | -- intersect: 26403326339.616913
[2025-06-06 15:15:50] 2025-06-06 13:14:09,597 | INFO     | intersect: 26403326339.616913
[2025-06-06 15:15:50] 2025-06-06 13:14:09,598 | INFO     | chi2: 2.891933353378983
[2025-06-06 15:15:50] 2025-06-06 13:14:09,598 | INFO     | sum of square deviations: 5449944045.0
[2025-06-06 15:15:50] 2025-06-06 13:14:09,600 | INFO     | sum of deviations: -66848756402.49997
[2025-06-06 15:15:50] 2025-06-06 13:14:09,600 | INFO     | mean x: 1749207336.5
[2025-06-06 15:15:50] 2025-06-06 13:14:09,600 | INFO     | mean y: 2577038.35
[2025-06-06 15:15:50] 2025-06-06 13:14:09,600 | INFO     | -- intersect: 21458271660.101715
[2025-06-06 15:15:50] 2025-06-06 13:14:09,601 | INFO     | intersect: 21458271660.101715
[2025-06-06 15:15:50] 2025-06-06 13:14:09,601 | INFO     | chi2: 2.125056418731222
[2025-06-06 15:15:50] 2025-06-06 13:14:09,601 | INFO     | current chi2=2.125056418731222 (change=26.51779418608417 %)
[2025-06-06 15:15:50] 2025-06-06 13:14:09,601 | INFO     | sum of square deviations: 5141528960.0
[2025-06-06 15:15:50] 2025-06-06 13:14:09,603 | INFO     | sum of deviations: -64316612883.0
[2025-06-06 15:15:50] 2025-06-06 13:14:09,604 | INFO     | mean x: 1749207184.0
[2025-06-06 15:15:50] 2025-06-06 13:14:09,604 | INFO     | mean y: 2578290.556862745
[2025-06-06 15:15:50] 2025-06-06 13:14:09,604 | INFO     | -- intersect: 21883828436.32878
[2025-06-06 15:15:50] 2025-06-06 13:14:09,604 | INFO     | intersect: 21883828436.32878
[2025-06-06 15:15:50] 2025-06-06 13:14:09,604 | INFO     | chi2: 2.122389653385329
[2025-06-06 15:15:50] 2025-06-06 13:14:09,604 | INFO     | current chi2=2.122389653385329 (change=0.12549150800829795 %)
[2025-06-06 15:15:50] 2025-06-06 13:14:09,604 | INFO     | right removable region: 254
[2025-06-06 15:15:50] 2025-06-06 13:14:09,605 | INFO     | sum of square deviations: 5449944045.0
[2025-06-06 15:15:50] 2025-06-06 13:14:09,607 | INFO     | sum of deviations: -138593579412.0
[2025-06-06 15:15:50] 2025-06-06 13:14:09,607 | INFO     | mean x: 1749207641.5
[2025-06-06 15:15:50] 2025-06-06 13:14:09,607 | INFO     | mean y: 2591880.6461538463
[2025-06-06 15:15:50] 2025-06-06 13:14:09,607 | INFO     | -- intersect: 44485424395.72888
[2025-06-06 15:15:50] 2025-06-06 13:14:09,608 | INFO     | intersect: 44485424395.72888
[2025-06-06 15:15:50] 2025-06-06 13:14:09,608 | INFO     | chi2: 1.0460533187922074
[2025-06-06 15:15:50] 2025-06-06 13:14:09,608 | INFO     | current chi2=1.0460533187922074 (change=63.82858140316472 %)
[2025-06-06 15:15:50] 2025-06-06 13:14:09,608 | INFO     | sum of square deviations: 5141528960.0
[2025-06-06 15:15:50] 2025-06-06 13:14:09,610 | INFO     | sum of deviations: -136676448109.99995
[2025-06-06 15:15:50] 2025-06-06 13:14:09,611 | INFO     | mean x: 1749207794.0
[2025-06-06 15:15:50] 2025-06-06 13:14:09,611 | INFO     | mean y: 2590913.9098039214
[2025-06-06 15:15:50] 2025-06-06 13:14:09,611 | INFO     | -- intersect: 46501504009.64553
[2025-06-06 15:15:50] 2025-06-06 13:14:09,611 | INFO     | intersect: 46501504009.64553
[2025-06-06 15:15:50] 2025-06-06 13:14:09,611 | INFO     | chi2: 1.0260447986855301
[2025-06-06 15:15:50] 2025-06-06 13:14:09,611 | INFO     | current chi2=1.0260447986855301 (change=1.9127629296926771 %)
[2025-06-06 15:15:50] 2025-06-06 13:14:09,612 | INFO     | left removable region: 20
[2025-06-06 15:15:50] 2025-06-06 13:14:09,612 | INFO     | sum of square deviations: 3972995422.5
[2025-06-06 15:15:50] 2025-06-06 13:14:09,614 | INFO     | sum of deviations: -101772253233.99995
[2025-06-06 15:15:50] 2025-06-06 13:14:09,614 | INFO     | mean x: 1749207763.5
[2025-06-06 15:15:50] 2025-06-06 13:14:09,614 | INFO     | mean y: 2597409.376068376
[2025-06-06 15:15:50] 2025-06-06 13:14:09,614 | INFO     | -- intersect: 44810304576.02099
[2025-06-06 15:15:50] 2025-06-06 13:14:09,614 | INFO     | intersect: 44810304576.02099
[2025-06-06 15:15:50] 2025-06-06 13:14:09,614 | INFO     | chi2: 0.22278442333620999
[2025-06-06 15:15:50] 2025-06-06 13:14:09,614 | INFO     | -- intersect: 44810304576.02099
[2025-06-06 15:15:50] 2025-06-06 13:14:09,615 | INFO     | current memory leak: -25.62 B/s (using 234 data points, chi2=0.22)
[2025-06-06 15:15:50] 2025-06-06 13:14:09,615 | INFO     | ..............................
[2025-06-06 15:15:50] 2025-06-06 13:14:09,615 | INFO     | . Timing measurements:
[2025-06-06 15:15:50] 2025-06-06 13:14:09,616 | INFO     | . get job = 0 s
[2025-06-06 15:15:50] 2025-06-06 13:14:09,616 | INFO     | . initial setup = 2 s
[2025-06-06 15:15:50] 2025-06-06 13:14:09,616 | INFO     | . payload setup = 26 s
[2025-06-06 15:15:50] 2025-06-06 13:14:09,616 | INFO     | . stage-in = 0 s
[2025-06-06 15:15:50] 2025-06-06 13:14:09,616 | INFO     | . payload execution = 16165 s
[2025-06-06 15:15:50] 2025-06-06 13:14:09,616 | INFO     | . stage-out = 3 s
[2025-06-06 15:15:50] 2025-06-06 13:14:09,616 | INFO     | . log creation = 1 s
[2025-06-06 15:15:50] 2025-06-06 13:14:09,616 | INFO     | ..............................
[2025-06-06 15:15:50] 2025-06-06 13:14:09,746 | INFO     | 
[2025-06-06 15:15:50] 2025-06-06 13:14:09,746 | INFO     | job summary report
[2025-06-06 15:15:50] 2025-06-06 13:14:09,746 | INFO     | --------------------------------------------------
[2025-06-06 15:15:50] 2025-06-06 13:14:09,746 | INFO     | PanDA job id: 6668688930
[2025-06-06 15:15:50] 2025-06-06 13:14:09,746 | INFO     | task id: 44871837
[2025-06-06 15:15:50] 2025-06-06 13:14:09,747 | INFO     | errors: (none)
[2025-06-06 15:15:50] 2025-06-06 13:14:09,747 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 15:15:50] 2025-06-06 13:14:09,747 | INFO     | pilot state: finished 
[2025-06-06 15:15:50] 2025-06-06 13:14:09,747 | INFO     | transexitcode: 0
[2025-06-06 15:15:50] 2025-06-06 13:14:09,747 | INFO     | exeerrorcode: 0
[2025-06-06 15:15:50] 2025-06-06 13:14:09,747 | INFO     | exeerrordiag: 
[2025-06-06 15:15:50] 2025-06-06 13:14:09,747 | INFO     | exitcode: 0
[2025-06-06 15:15:50] 2025-06-06 13:14:09,747 | INFO     | exitmsg: OK
[2025-06-06 15:15:50] 2025-06-06 13:14:09,747 | INFO     | cpuconsumptiontime: 61894 s
[2025-06-06 15:15:50] 2025-06-06 13:14:09,747 | INFO     | nevents: 400
[2025-06-06 15:15:50] 2025-06-06 13:14:09,747 | INFO     | neventsw: 0
[2025-06-06 15:15:50] 2025-06-06 13:14:09,747 | INFO     | pid: 19239
[2025-06-06 15:15:50] 2025-06-06 13:14:09,748 | INFO     | pgrp: 19239
[2025-06-06 15:15:50] 2025-06-06 13:14:09,748 | INFO     | corecount: 8
[2025-06-06 15:15:50] 2025-06-06 13:14:09,748 | INFO     | event service: False
[2025-06-06 15:15:50] 2025-06-06 13:14:09,748 | INFO     | sizes: {0: 2397221, 1: 2397420, 2: 2397420, 12: 2397654, 13: 2397682, 16196: 2428589, 16201: 2437530, 16203: 2437586, 16297: 2437756}
[2025-06-06 15:15:50] 2025-06-06 13:14:09,748 | INFO     | --------------------------------------------------
[2025-06-06 15:15:50] 2025-06-06 13:14:09,748 | INFO     | 
[2025-06-06 15:15:50] 2025-06-06 13:14:09,748 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-06-06 15:15:50] 2025-06-06 13:14:10,157 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 15:15:50] 2025-06-06 13:14:10,157 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 15:15:50] 2025-06-06 13:14:10,157 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 15:15:50] 2025-06-06 13:14:10,157 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 15:15:50] 2025-06-06 13:14:10,157 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 15:15:50] 2025-06-06 13:14:10,157 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 15:15:50] 2025-06-06 13:14:10,157 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 15:15:50] 2025-06-06 13:14:10,158 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 15:15:50] 2025-06-06 13:14:10,158 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 15:15:50] 2025-06-06 13:14:10,158 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 15:15:50] 2025-06-06 13:14:10,158 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 15:15:50] 2025-06-06 13:14:10,158 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 15:15:50] 2025-06-06 13:14:10,158 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 15:15:50] 2025-06-06 13:14:10,158 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 15:15:50] 2025-06-06 13:14:10,158 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 15:15:50] 2025-06-06 13:14:10,158 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 15:15:50] 2025-06-06 13:14:10,158 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 15:15:50] 2025-06-06 13:14:10,158 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 15:15:50] 2025-06-06 13:14:10,158 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 15:15:50] 2025-06-06 13:14:10,158 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 15:15:50] 2025-06-06 13:14:10,159 | INFO     | job 6668688930 has completed (purged errors)
[2025-06-06 15:15:50] 2025-06-06 13:14:10,159 | INFO     | overall cleanup function is called
[2025-06-06 15:15:50] 2025-06-06 13:14:11,168 | INFO     | --- collectZombieJob: --- 10, [19239]
[2025-06-06 15:15:50] 2025-06-06 13:14:11,168 | INFO     | zombie collector waiting for pid 19239
[2025-06-06 15:15:50] 2025-06-06 13:14:11,168 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 15:15:50] 2025-06-06 13:14:11,168 | INFO     | collected zombie processes
[2025-06-06 15:15:50] 2025-06-06 13:14:11,168 | INFO     | will attempt to kill all subprocesses of pid=19239
[2025-06-06 15:15:50] 2025-06-06 13:14:11,288 | INFO     | process IDs to be killed: [19239] (in reverse order)
[2025-06-06 15:15:50] 2025-06-06 13:14:12,132 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 15:15:50] 2025-06-06 13:14:12,133 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 15:15:50] 2025-06-06 13:14:12,136 | INFO     | did not find any defunct processes belonging to 19239
[2025-06-06 15:15:50] 2025-06-06 13:14:12,139 | INFO     | did not find any defunct processes belonging to 19239
[2025-06-06 15:15:50] 2025-06-06 13:14:12,140 | INFO     | ready for new job
[2025-06-06 15:15:50] 2025-06-06 13:14:12,140 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 15:15:50] 2025-06-06 13:14:12,142 | INFO     | **************************************
[2025-06-06 15:15:50] 2025-06-06 13:14:12,142 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 15:15:50] 2025-06-06 13:14:12,142 | INFO     | **************************************
[2025-06-06 15:15:50] 2025-06-06 13:14:12,142 | INFO     | 
[2025-06-06 15:15:50] 2025-06-06 13:14:12,143 | INFO     | pilot is running in a VM
[2025-06-06 15:15:50] 2025-06-06 13:14:12,143 | INFO     | architecture information:
[2025-06-06 15:15:50] 2025-06-06 13:14:12,144 | INFO     | executing command: cat /etc/os-release
[2025-06-06 15:15:50] 2025-06-06 13:14:12,168 | INFO     | cat /etc/os-release:
[2025-06-06 15:15:50] NAME="CentOS Linux"
[2025-06-06 15:15:50] VERSION="7 (Core)"
[2025-06-06 15:15:50] ID="centos"
[2025-06-06 15:15:50] ID_LIKE="rhel fedora"
[2025-06-06 15:15:50] VERSION_ID="7"
[2025-06-06 15:15:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 15:15:50] ANSI_COLOR="0;31"
[2025-06-06 15:15:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 15:15:50] HOME_URL="https://www.centos.org/"
[2025-06-06 15:15:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 15:15:50] 
[2025-06-06 15:15:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 15:15:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 15:15:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 15:15:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 15:15:50] 
[2025-06-06 15:15:50] 2025-06-06 13:14:12,168 | INFO     | **************************************
[2025-06-06 15:15:50] 2025-06-06 13:14:12,672 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-06-06 15:15:50] 2025-06-06 13:14:12,742 | INFO     | sufficient remaining disk space (471019290624 B)
[2025-06-06 15:15:50] 2025-06-06 13:14:12,742 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 15:15:50] 2025-06-06 13:14:12,742 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 15:15:50] 2025-06-06 13:14:12,742 | INFO     | update_server=False
[2025-06-06 15:15:50] 2025-06-06 13:14:12,743 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 15:15:50] 2025-06-06 13:14:12,743 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 15:15:50] 2025-06-06 13:14:13,057 | INFO     | all data control threads have been joined
[2025-06-06 15:15:50] 2025-06-06 13:14:13,362 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 15:15:50] 2025-06-06 13:14:13,362 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 15:15:50] 2025-06-06 13:14:13,362 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 15:15:50] 2025-06-06 13:14:13,547 | INFO     | all payload control threads have been joined
[2025-06-06 15:15:50] 2025-06-06 13:14:13,734 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 15:15:50] 2025-06-06 13:14:13,734 | INFO     | aborting loop
[2025-06-06 15:15:50] 2025-06-06 13:14:13,749 | INFO     | [job] retrieve thread has finished
[2025-06-06 15:15:50] 2025-06-06 13:14:13,851 | INFO     | [payload] failed_post thread has finished
[2025-06-06 15:15:50] 2025-06-06 13:14:13,854 | INFO     | [payload] validate_post thread has finished
[2025-06-06 15:15:50] 2025-06-06 13:14:14,055 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 15:15:50] 2025-06-06 13:14:14,063 | INFO     | [data] control thread has finished
[2025-06-06 15:15:50] 2025-06-06 13:14:14,328 | INFO     | all job control threads have been joined
[2025-06-06 15:15:50] 2025-06-06 13:14:14,381 | INFO     | [job] validate thread has finished
[2025-06-06 15:15:50] 2025-06-06 13:14:14,551 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 15:15:50] 2025-06-06 13:14:14,553 | INFO     | [payload] control thread has finished
[2025-06-06 15:15:50] 2025-06-06 13:14:14,555 | INFO     | [data] copytool_in thread has finished
[2025-06-06 15:15:50] 2025-06-06 13:14:14,740 | INFO     | [job] job monitor thread has finished
[2025-06-06 15:15:50] 2025-06-06 13:14:14,750 | INFO     | [data] copytool_out thread has finished
[2025-06-06 15:15:50] 2025-06-06 13:14:14,761 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 15:15:50] 2025-06-06 13:14:15,089 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 15:15:50] 2025-06-06 13:14:15,192 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 15:15:50] 2025-06-06 13:14:15,334 | INFO     | [job] control thread has finished
[2025-06-06 15:15:50] 2025-06-06 13:14:15,767 | INFO     | [job] queue monitor thread has finished
[2025-06-06 15:15:50] 2025-06-06 13:14:16,163 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 15:15:50] 2025-06-06 13:14:20,172 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 15:15:50] 2025-06-06 13:14:21,155 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140202949302080)>', '<ExcThread(monitor, started 140202295162624)>']
[2025-06-06 15:15:50] 2025-06-06 13:14:21,410 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 15:15:50] 2025-06-06 13:14:21,410 | INFO     | [monitor] control thread has ended
[2025-06-06 15:15:50] 2025-06-06 13:14:26,181 | INFO     | all workflow threads have been joined
[2025-06-06 15:15:50] 2025-06-06 13:14:26,181 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 15:15:50] 2025-06-06 13:14:26,181 | INFO     | traces error code: 0
[2025-06-06 15:15:50] 2025-06-06 13:14:26,182 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 15:15:50] 2025-06-06 13:14:26,689 [wrapper] ==== pilot stdout END ====
[2025-06-06 15:15:50] 2025-06-06 13:14:26,784 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 15:15:50] 2025-06-06 13:14:26,847 [wrapper] pilotpid: 11657
[2025-06-06 15:15:50] 2025-06-06 13:14:26,936 [wrapper] Pilot exit status: 0
[2025-06-06 15:15:50] 2025-06-06 13:14:27,422 [wrapper] pandaids: 6668688930
[2025-06-06 15:15:50] 2025-06-06 13:14:28,489 [wrapper] cleanup supervisor_pilot 24661 11658
[2025-06-06 15:15:50] 2025-06-06 13:14:28,582 [wrapper] Test setup, not cleaning
[2025-06-06 15:15:50] 2025-06-06 13:14:28,642 [wrapper] apfmon messages muted
[2025-06-06 15:15:50] 2025-06-06 13:14:28,738 [wrapper] ==== wrapper stdout END ====
[2025-06-06 15:15:50] 2025-06-06 13:14:28,788 [wrapper] ==== wrapper stderr END ====
[2025-06-06 15:15:50]  *** Error codes and diagnostics ***
[2025-06-06 15:15:50]     "exeErrorCode": 0,
[2025-06-06 15:15:50]     "exeErrorDiag": "",
[2025-06-06 15:15:50]     "pilotErrorCode": 0,
[2025-06-06 15:15:50]     "pilotErrorDiag": "",
[2025-06-06 15:15:50]  *** Listing of results directory ***
[2025-06-06 15:15:50] total 422760
[2025-06-06 15:15:50] -rw-r--r--. 1 boinc boinc    495897 May 28 18:21 pilot3.tar.gz
[2025-06-06 15:15:50] -rw-r--r--. 1 boinc boinc      5111 May 28 18:36 queuedata.json
[2025-06-06 15:15:50] -rwx------. 1 boinc boinc     37140 May 28 18:37 runpilot2-wrapper.sh
[2025-06-06 15:15:50] -rw-r--r--. 1 boinc boinc       100 Jun  6 10:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 15:15:50] -rwxr-xr-x. 1 boinc boinc      7986 Jun  6 10:13 run_atlas
[2025-06-06 15:15:50] -rw-r--r--. 1 boinc boinc       105 Jun  6 10:13 job.xml
[2025-06-06 15:15:50] -rw-r--r--. 1 boinc boinc      6391 Jun  6 10:13 init_data.xml
[2025-06-06 15:15:50] -rw-r--r--. 2 boinc boinc 223455509 Jun  6 10:13 EVNT.44871834._003398.pool.root.1
[2025-06-06 15:15:50] -rw-r--r--. 2 boinc boinc     15093 Jun  6 10:13 start_atlas.sh
[2025-06-06 15:15:50] drwxrwx--x. 2 boinc boinc        68 Jun  6 10:13 shared
[2025-06-06 15:15:50] -rw-r--r--. 2 boinc boinc    508884 Jun  6 10:13 input.tar.gz
[2025-06-06 15:15:50] -rw-r--r--. 1 boinc boinc         0 Jun  6 10:13 boinc_lockfile
[2025-06-06 15:15:50] -rw-r--r--. 1 boinc boinc      2559 Jun  6 10:41 pandaJob.out
[2025-06-06 15:15:50] -rw-------. 1 boinc boinc    987967 Jun  6 10:42 agis_schedconf.cvmfs.json
[2025-06-06 15:15:50] drwx------. 4 boinc boinc      4096 Jun  6 10:42 pilot3
[2025-06-06 15:15:50] -rw-------. 1 boinc boinc 202035806 Jun  6 15:11 HITS.44871837._087229.pool.root.1
[2025-06-06 15:15:50] -rw-r--r--. 1 boinc boinc       530 Jun  6 15:11 boinc_task_state.xml
[2025-06-06 15:15:50] -rw-------. 1 boinc boinc      1018 Jun  6 15:12 memory_monitor_summary.json
[2025-06-06 15:15:50] -rw-------. 1 boinc boinc   1598969 Jun  6 15:12 agis_ddmendpoints.agis.ALL.json
[2025-06-06 15:15:50] -rw-------. 1 boinc boinc    396860 Jun  6 15:12 log.44871837._087229.job.log.tgz.1
[2025-06-06 15:15:50] -rw-------. 1 boinc boinc        95 Jun  6 15:13 pilot_heartbeat.json
[2025-06-06 15:15:50] -rw-------. 1 boinc boinc      7696 Jun  6 15:14 heartbeat.json
[2025-06-06 15:15:50] -rw-------. 1 boinc boinc      4416 Jun  6 15:14 pilotlog.txt
[2025-06-06 15:15:50] -rw-------. 1 boinc boinc   1401250 Jun  6 15:14 log.44871837._087229.job.log.1
[2025-06-06 15:15:50] -rw-------. 1 boinc boinc       357 Jun  6 15:14 output.list
[2025-06-06 15:15:50] -rw-r--r--. 1 boinc boinc       620 Jun  6 15:14 runtime_log
[2025-06-06 15:15:50] -rw-------. 1 boinc boinc   1812480 Jun  6 15:14 result.tar.gz
[2025-06-06 15:15:50] -rw-------. 1 boinc boinc       657 Jun  6 15:14 RwaNDmQxYe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFccKDmqaLHLm.diag
[2025-06-06 15:15:50] -rw-r--r--. 1 boinc boinc      8659 Jun  6 15:14 runtime_log.err
[2025-06-06 15:15:50] -rw-r--r--. 1 boinc boinc      8192 Jun  6 15:15 boinc_mmap_file
[2025-06-06 15:15:50] -rw-r--r--. 1 boinc boinc        28 Jun  6 15:15 wrapper_checkpoint.txt
[2025-06-06 15:15:50] -rw-r--r--. 1 boinc boinc     20487 Jun  6 15:15 stderr.txt
[2025-06-06 15:15:50] HITS file was successfully produced:
[2025-06-06 15:15:50] -rw-------. 1 boinc boinc 202035806 Jun  6 15:11 shared/HITS.pool.root.1
[2025-06-06 15:15:50]  *** Contents of shared directory: ***
[2025-06-06 15:15:50] total 417812
[2025-06-06 15:15:50] -rw-r--r--. 2 boinc boinc 223455509 Jun  6 10:13 ATLAS.root_0
[2025-06-06 15:15:50] -rw-r--r--. 2 boinc boinc     15093 Jun  6 10:13 start_atlas.sh
[2025-06-06 15:15:50] -rw-r--r--. 2 boinc boinc    508884 Jun  6 10:13 input.tar.gz
[2025-06-06 15:15:50] -rw-------. 1 boinc boinc 202035806 Jun  6 15:11 HITS.pool.root.1
[2025-06-06 15:15:50] -rw-------. 1 boinc boinc   1812480 Jun  6 15:14 result.tar.gz
15:15:52 (32648): run_atlas exited; CPU time 62082.852991
15:15:52 (32648): called boinc_finish(0)

</stderr_txt>
]]>

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