Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:20:15 (13467): wrapper (7.7.26015): starting
23:20:15 (13467): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 23:20:15] Arguments: --nthreads 12
[2025-06-05 23:20:15] Threads: 12
[2025-06-05 23:20:15] Checking for CVMFS
[2025-06-05 23:20:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 23:20:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 23:20:15] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 23:20:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 23:20:15] 2.11.2.0 3035 37968 90620 146842 2 1 19279799 20275200 1 130560 0 17044813 99.983 7082886 8428 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-05 23:20:15] CVMFS is ok
[2025-06-05 23:20:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 23:20:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 23:20:15] Further information can be found at the LHC@home message board.
[2025-06-05 23:20:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 23:20:15] Checking for apptainer binary...
[2025-06-05 23:20:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 23:20:15] Running /usr/bin/apptainer --version
[2025-06-05 23:20:15] apptainer version 1.3.2-1.el7
[2025-06-05 23:20:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 23:20:17] c-205-31.aglt2.org
[2025-06-05 23:20:17] apptainer works
[2025-06-05 23:20:17] Set ATHENA_PROC_NUMBER=12
[2025-06-05 23:20:17] Set ATHENA_CORE_NUMBER=12
[2025-06-05 23:20:17] Starting ATLAS job with PandaID=6681391852
[2025-06-05 23:20:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 00:25:01]  *** The last 200 lines of the pilot log: ***
[2025-06-06 00:25:01]  replicas=None
[2025-06-06 00:25:01]  scope=mc23_13p6TeV
[2025-06-06 00:25:01]  status=None
[2025-06-06 00:25:01]  status_code=0
[2025-06-06 00:25:01]  storage_token=
[2025-06-06 00:25:01]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6681391852/log.45006595._057122.job.log.tgz.1
[2025-06-06 00:25:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bd/9f/log.45006595._057122.job.log.tgz.1
[2025-06-06 00:25:01]  workdir=None
[2025-06-06 00:25:01] ]
[2025-06-06 00:25:01] 2025-06-06 04:24:22,085 | INFO     | transferring file log.45006595._057122.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6681391852/log.45006595._057122.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-06 00:25:01] 2025-06-06 04:24:22,085 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6681391852/log.45006595._057122.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._057122.job
[2025-06-06 00:25:01] 2025-06-06 04:24:22,105 | INFO     | adding to output.list: log.45006595._057122.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bd/9f/log.45006595._057122.job.log.tg
[2025-06-06 00:25:01] 2025-06-06 04:24:22,106 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 00:25:01] 2025-06-06 04:24:22,106 | INFO     | summary of transferred files:
[2025-06-06 00:25:01] 2025-06-06 04:24:22,106 | INFO     |  -- lfn=log.45006595._057122.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 00:25:01] 2025-06-06 04:24:22,107 | INFO     | stage-out finished correctly
[2025-06-06 00:25:01] 2025-06-06 04:24:23,145 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 00:25:01] 2025-06-06 04:24:23,739 | WARNING  | process 25114 can no longer be monitored (due to stat problems) - aborting
[2025-06-06 00:25:01] 2025-06-06 04:24:23,740 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6681391852/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 00:25:01] 2025-06-06 04:24:23,825 | INFO     | number of running child processes to parent process 25114: 1
[2025-06-06 00:25:01] 2025-06-06 04:24:23,825 | INFO     | maximum number of monitored processes: 6
[2025-06-06 00:25:01] 2025-06-06 04:24:24,863 | INFO     | job 6681391852 has state=finished
[2025-06-06 00:25:01] 2025-06-06 04:24:24,863 | INFO     | preparing for final server update for job 6681391852 in state='finished'
[2025-06-06 00:25:01] 2025-06-06 04:24:24,863 | INFO     | this job has now completed (state=finished)
[2025-06-06 00:25:01] 2025-06-06 04:24:24,863 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 00:25:01] 2025-06-06 04:24:24,863 | INFO     | log transfer has been attempted: DONE
[2025-06-06 00:25:01] 2025-06-06 04:24:24,864 | INFO     | job 6681391852 has finished - writing final server update
[2025-06-06 00:25:01] 2025-06-06 04:24:24,864 | INFO     | total number of processed events: 400 (read)
[2025-06-06 00:25:01] 2025-06-06 04:24:24,865 | INFO     | executing command: lscpu
[2025-06-06 00:25:01] 2025-06-06 04:24:24,889 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 00:25:01] 2025-06-06 04:24:25,192 | INFO     | PID=17068 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-06 00:25:01] 2025-06-06 04:24:26,327 | INFO     | monitor loop #288: job 0:6681391852 is in state 'finished'
[2025-06-06 00:25:01] 2025-06-06 04:24:26,327 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 00:25:01] 2025-06-06 04:24:28,830 | INFO     | monitor loop #289: job 0:6681391852 is in state 'finished'
[2025-06-06 00:25:01] 2025-06-06 04:24:28,830 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 00:25:01] 2025-06-06 04:24:29,433 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-06 00:25:01] 2025-06-06 04:24:29,436 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0833333333333
[2025-06-06 00:25:01] 2025-06-06 04:24:29,437 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6681391852/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 00:25:01] 2025-06-06 04:24:29,438 | INFO     | extracted standard info from prmon json
[2025-06-06 00:25:01] 2025-06-06 04:24:29,438 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 00:25:01] 2025-06-06 04:24:29,438 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 00:25:01] 2025-06-06 04:24:29,439 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 00:25:01] 2025-06-06 04:24:29,439 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 00:25:01] 2025-06-06 04:24:29,440 | INFO     | fitting pss+swap vs Time
[2025-06-06 00:25:01] 2025-06-06 04:24:29,440 | INFO     | sum of square deviations: 54438230.0
[2025-06-06 00:25:01] 2025-06-06 04:24:29,440 | INFO     | sum of deviations: -2140809640.0000002
[2025-06-06 00:25:01] 2025-06-06 04:24:29,441 | INFO     | mean x: 1749182045.5
[2025-06-06 00:25:01] 2025-06-06 04:24:29,441 | INFO     | mean y: 2912310.8571428573
[2025-06-06 00:25:01] 2025-06-06 04:24:29,441 | INFO     | -- intersect: 68790339549.42311
[2025-06-06 00:25:01] 2025-06-06 04:24:29,441 | INFO     | intersect: 68790339549.42311
[2025-06-06 00:25:01] 2025-06-06 04:24:29,441 | INFO     | chi2: 0.05119137830944503
[2025-06-06 00:25:01] 2025-06-06 04:24:29,441 | INFO     | -- intersect: 68790339549.42311
[2025-06-06 00:25:01] 2025-06-06 04:24:29,441 | INFO     | current memory leak: -39.33 B/s (using 56 data points, chi2=0.05)
[2025-06-06 00:25:01] 2025-06-06 04:24:29,442 | INFO     | could have reported an average CPU frequency of 2041 MHz (6 samples)
[2025-06-06 00:25:01] 2025-06-06 04:24:29,442 | INFO     | ..............................
[2025-06-06 00:25:01] 2025-06-06 04:24:29,442 | INFO     | . Timing measurements:
[2025-06-06 00:25:01] 2025-06-06 04:24:29,442 | INFO     | . get job = 0 s
[2025-06-06 00:25:01] 2025-06-06 04:24:29,442 | INFO     | . initial setup = 2 s
[2025-06-06 00:25:01] 2025-06-06 04:24:29,442 | INFO     | . payload setup = 10 s
[2025-06-06 00:25:01] 2025-06-06 04:24:29,442 | INFO     | . stage-in = 0 s
[2025-06-06 00:25:01] 2025-06-06 04:24:29,442 | INFO     | . payload execution = 3799 s
[2025-06-06 00:25:01] 2025-06-06 04:24:29,443 | INFO     | . stage-out = 0 s
[2025-06-06 00:25:01] 2025-06-06 04:24:29,443 | INFO     | . log creation = 0 s
[2025-06-06 00:25:01] 2025-06-06 04:24:29,443 | INFO     | ..............................
[2025-06-06 00:25:01] 2025-06-06 04:24:29,527 | INFO     | 
[2025-06-06 00:25:01] 2025-06-06 04:24:29,528 | INFO     | job summary report
[2025-06-06 00:25:01] 2025-06-06 04:24:29,528 | INFO     | --------------------------------------------------
[2025-06-06 00:25:01] 2025-06-06 04:24:29,528 | INFO     | PanDA job id: 6681391852
[2025-06-06 00:25:01] 2025-06-06 04:24:29,528 | INFO     | task id: 45006595
[2025-06-06 00:25:01] 2025-06-06 04:24:29,528 | INFO     | errors: (none)
[2025-06-06 00:25:01] 2025-06-06 04:24:29,528 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 00:25:01] 2025-06-06 04:24:29,529 | INFO     | pilot state: finished 
[2025-06-06 00:25:01] 2025-06-06 04:24:29,529 | INFO     | transexitcode: 0
[2025-06-06 00:25:01] 2025-06-06 04:24:29,529 | INFO     | exeerrorcode: 0
[2025-06-06 00:25:01] 2025-06-06 04:24:29,529 | INFO     | exeerrordiag: 
[2025-06-06 00:25:01] 2025-06-06 04:24:29,529 | INFO     | exitcode: 0
[2025-06-06 00:25:01] 2025-06-06 04:24:29,529 | INFO     | exitmsg: OK
[2025-06-06 00:25:01] 2025-06-06 04:24:29,530 | INFO     | cpuconsumptiontime: 40943 s
[2025-06-06 00:25:01] 2025-06-06 04:24:29,530 | INFO     | nevents: 400
[2025-06-06 00:25:01] 2025-06-06 04:24:29,530 | INFO     | neventsw: 0
[2025-06-06 00:25:01] 2025-06-06 04:24:29,530 | INFO     | pid: 25114
[2025-06-06 00:25:01] 2025-06-06 04:24:29,530 | INFO     | pgrp: 25114
[2025-06-06 00:25:01] 2025-06-06 04:24:29,530 | INFO     | corecount: 12
[2025-06-06 00:25:01] 2025-06-06 04:24:29,531 | INFO     | event service: False
[2025-06-06 00:25:01] 2025-06-06 04:24:29,531 | INFO     | sizes: {0: 2396802, 1: 2397658, 6: 2397920, 12: 2397948, 3813: 2423699, 3814: 2432640, 3815: 2432824, 3822: 2433018}
[2025-06-06 00:25:01] 2025-06-06 04:24:29,531 | INFO     | --------------------------------------------------
[2025-06-06 00:25:01] 2025-06-06 04:24:29,531 | INFO     | 
[2025-06-06 00:25:01] 2025-06-06 04:24:29,531 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-06 00:25:01] 2025-06-06 04:24:29,553 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 00:25:01] 2025-06-06 04:24:29,553 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 00:25:01] 2025-06-06 04:24:29,553 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 00:25:01] 2025-06-06 04:24:29,553 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 00:25:01] 2025-06-06 04:24:29,554 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 00:25:01] 2025-06-06 04:24:29,554 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 00:25:01] 2025-06-06 04:24:29,554 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 00:25:01] 2025-06-06 04:24:29,554 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 00:25:01] 2025-06-06 04:24:29,554 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 00:25:01] 2025-06-06 04:24:29,554 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 00:25:01] 2025-06-06 04:24:29,555 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 00:25:01] 2025-06-06 04:24:29,555 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 00:25:01] 2025-06-06 04:24:29,555 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 00:25:01] 2025-06-06 04:24:29,555 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 00:25:01] 2025-06-06 04:24:29,555 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 00:25:01] 2025-06-06 04:24:29,555 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 00:25:01] 2025-06-06 04:24:29,556 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 00:25:01] 2025-06-06 04:24:29,556 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 00:25:01] 2025-06-06 04:24:29,556 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 00:25:01] 2025-06-06 04:24:29,556 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 00:25:01] 2025-06-06 04:24:29,556 | INFO     | job 6681391852 has completed (purged errors)
[2025-06-06 00:25:01] 2025-06-06 04:24:29,556 | INFO     | overall cleanup function is called
[2025-06-06 00:25:01] 2025-06-06 04:24:30,564 | INFO     | --- collectZombieJob: --- 10, [25114]
[2025-06-06 00:25:01] 2025-06-06 04:24:30,564 | INFO     | zombie collector waiting for pid 25114
[2025-06-06 00:25:01] 2025-06-06 04:24:30,565 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 00:25:01] 2025-06-06 04:24:30,565 | INFO     | collected zombie processes
[2025-06-06 00:25:01] 2025-06-06 04:24:30,565 | INFO     | will attempt to kill all subprocesses of pid=25114
[2025-06-06 00:25:01] 2025-06-06 04:24:30,654 | INFO     | process IDs to be killed: [25114] (in reverse order)
[2025-06-06 00:25:01] 2025-06-06 04:24:30,706 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 00:25:01] 2025-06-06 04:24:30,707 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 00:25:01] 2025-06-06 04:24:30,710 | INFO     | did not find any defunct processes belonging to 25114
[2025-06-06 00:25:01] 2025-06-06 04:24:30,714 | INFO     | did not find any defunct processes belonging to 25114
[2025-06-06 00:25:01] 2025-06-06 04:24:30,714 | INFO     | ready for new job
[2025-06-06 00:25:01] 2025-06-06 04:24:30,714 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 00:25:01] 2025-06-06 04:24:30,715 | INFO     | ***************************************
[2025-06-06 00:25:01] 2025-06-06 04:24:30,715 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-06 00:25:01] 2025-06-06 04:24:30,716 | INFO     | ***************************************
[2025-06-06 00:25:01] 2025-06-06 04:24:30,716 | INFO     | 
[2025-06-06 00:25:01] 2025-06-06 04:24:30,716 | INFO     | architecture information:
[2025-06-06 00:25:01] 2025-06-06 04:24:30,717 | INFO     | executing command: cat /etc/os-release
[2025-06-06 00:25:01] 2025-06-06 04:24:30,731 | INFO     | cat /etc/os-release:
[2025-06-06 00:25:01] NAME="CentOS Linux"
[2025-06-06 00:25:01] VERSION="7 (Core)"
[2025-06-06 00:25:01] ID="centos"
[2025-06-06 00:25:01] ID_LIKE="rhel fedora"
[2025-06-06 00:25:01] VERSION_ID="7"
[2025-06-06 00:25:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 00:25:01] ANSI_COLOR="0;31"
[2025-06-06 00:25:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 00:25:01] HOME_URL="https://www.centos.org/"
[2025-06-06 00:25:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 00:25:01] 
[2025-06-06 00:25:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 00:25:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 00:25:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 00:25:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 00:25:01] 
[2025-06-06 00:25:01] 2025-06-06 04:24:30,731 | INFO     | ***************************************
[2025-06-06 00:25:01] 2025-06-06 04:24:31,234 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-06 00:25:01] 2025-06-06 04:24:31,250 | INFO     | sufficient remaining disk space (29420945408 B)
[2025-06-06 00:25:01] 2025-06-06 04:24:31,251 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 00:25:01] 2025-06-06 04:24:31,251 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 00:25:01] 2025-06-06 04:24:31,251 | INFO     | update_server=False
[2025-06-06 00:25:01] 2025-06-06 04:24:31,251 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 00:25:01] 2025-06-06 04:24:31,251 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 00:25:01] 2025-06-06 04:24:31,263 | INFO     | all data control threads have been joined
[2025-06-06 00:25:01] 2025-06-06 04:24:31,333 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-06 00:25:01] 2025-06-06 04:24:31,333 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-06 00:25:01] 2025-06-06 04:24:31,333 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 00:25:01] 2025-06-06 04:24:31,334 | INFO     | will abort loop
[2025-06-06 00:25:01] 2025-06-06 04:24:31,399 | INFO     | all payload control threads have been joined
[2025-06-06 00:25:01] 2025-06-06 04:24:32,257 | INFO     | [job] retrieve thread has finished
[2025-06-06 00:25:01] 2025-06-06 04:24:32,257 | INFO     | [job] queue monitor thread has finished
[2025-06-06 00:25:01] 2025-06-06 04:24:32,268 | INFO     | [data] control thread has finished
[2025-06-06 00:25:01] 2025-06-06 04:24:32,339 | INFO     | [job] job monitor thread has finished
[2025-06-06 00:25:01] 2025-06-06 04:24:32,404 | INFO     | [payload] control thread has finished
[2025-06-06 00:25:01] 2025-06-06 04:24:32,611 | INFO     | all job control threads have been joined
[2025-06-06 00:25:01] 2025-06-06 04:24:32,707 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 00:25:01] 2025-06-06 04:24:32,791 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 00:25:01] 2025-06-06 04:24:32,877 | INFO     | [payload] failed_post thread has finished
[2025-06-06 00:25:01] 2025-06-06 04:24:33,036 | INFO     | [job] validate thread has finished
[2025-06-06 00:25:01] 2025-06-06 04:24:33,117 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 00:25:01] 2025-06-06 04:24:33,248 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 00:25:01] 2025-06-06 04:24:33,572 | INFO     | [payload] validate_post thread has finished
[2025-06-06 00:25:01] 2025-06-06 04:24:33,616 | INFO     | [job] control thread has finished
[2025-06-06 00:25:01] 2025-06-06 04:24:33,628 | INFO     | [data] copytool_in thread has finished
[2025-06-06 00:25:01] 2025-06-06 04:24:33,737 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 00:25:01] 2025-06-06 04:24:34,712 | INFO     | [data] copytool_out thread has finished
[2025-06-06 00:25:01] 2025-06-06 04:24:37,743 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 00:25:01] 2025-06-06 04:24:41,907 | INFO     | job.realtimelogging is not enabled
[2025-06-06 00:25:01] 2025-06-06 04:24:42,912 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 00:25:01] 2025-06-06 04:24:44,509 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140140648068928)>', '<ExcThread(monitor, started 140139615483648)>']
[2025-06-06 00:25:01] 2025-06-06 04:24:49,519 | INFO     | all workflow threads have been joined
[2025-06-06 00:25:01] 2025-06-06 04:24:49,526 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 00:25:01] 2025-06-06 04:24:49,527 | INFO     | traces error code: 0
[2025-06-06 00:25:01] 2025-06-06 04:24:49,527 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 00:25:01] 2025-06-06 04:25:01,402 | INFO     | PID=17068 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-06 00:25:01] 2025-06-06 04:25:01,402 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 00:25:01] 2025-06-06 04:25:01,402 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 00:25:01] 2025-06-06 04:25:01,402 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 00:25:01] 2025-06-06 04:25:01,402 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 00:25:01] 2025-06-06 04:25:01,403 | INFO     | [monitor] control thread has ended
[2025-06-06 00:25:01] 2025-06-06 04:25:01,505 [wrapper] ==== pilot stdout END ====
[2025-06-06 00:25:01] 2025-06-06 04:25:01,509 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 00:25:01] 2025-06-06 04:25:01,512 [wrapper] pilotpid: 17068
[2025-06-06 00:25:01] 2025-06-06 04:25:01,516 [wrapper] Pilot exit status: 0
[2025-06-06 00:25:01] 2025-06-06 04:25:01,532 [wrapper] pandaids: 6681391852
[2025-06-06 00:25:01] 2025-06-06 04:25:01,572 [wrapper] cleanup supervisor_pilot  3931 17069
[2025-06-06 00:25:01] 2025-06-06 04:25:01,576 [wrapper] Test setup, not cleaning
[2025-06-06 00:25:01] 2025-06-06 04:25:01,579 [wrapper] apfmon messages muted
[2025-06-06 00:25:01] 2025-06-06 04:25:01,583 [wrapper] ==== wrapper stdout END ====
[2025-06-06 00:25:01] 2025-06-06 04:25:01,587 [wrapper] ==== wrapper stderr END ====
[2025-06-06 00:25:01]  *** Error codes and diagnostics ***
[2025-06-06 00:25:01]     "exeErrorCode": 0,
[2025-06-06 00:25:01]     "exeErrorDiag": "",
[2025-06-06 00:25:01]     "pilotErrorCode": 0,
[2025-06-06 00:25:01]     "pilotErrorDiag": "",
[2025-06-06 00:25:01]  *** Listing of results directory ***
[2025-06-06 00:25:01] total 390228
[2025-06-06 00:25:01] -rwx------ 1 boincer umatlas     37140 Jun  5 20:05 runpilot2-wrapper.sh
[2025-06-06 00:25:01] -rw-r--r-- 1 boincer umatlas      5112 Jun  5 20:05 queuedata.json
[2025-06-06 00:25:01] -rw-r--r-- 1 boincer umatlas    529402 Jun  5 20:05 pilot3.tar.gz
[2025-06-06 00:25:01] -rw-r--r-- 1 boincer umatlas       100 Jun  5 23:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 00:25:01] -rwxr-xr-x 1 boincer umatlas      7986 Jun  5 23:20 run_atlas
[2025-06-06 00:25:01] -rw-r--r-- 1 boincer umatlas       105 Jun  5 23:20 job.xml
[2025-06-06 00:25:01] -rw-r--r-- 2 boincer umatlas     15095 Jun  5 23:20 start_atlas.sh
[2025-06-06 00:25:01] drwxrwx--x 2 boincer umatlas      4096 Jun  5 23:20 shared
[2025-06-06 00:25:01] -rw-r--r-- 2 boincer umatlas    541909 Jun  5 23:20 input.tar.gz
[2025-06-06 00:25:01] -rw-r--r-- 2 boincer umatlas 214288053 Jun  5 23:20 EVNT.45006593._000886.pool.root.1
[2025-06-06 00:25:01] -rw-r--r-- 1 boincer umatlas         0 Jun  5 23:20 boinc_lockfile
[2025-06-06 00:25:01] -rw-r--r-- 1 boincer umatlas      2523 Jun  5 23:20 pandaJob.out
[2025-06-06 00:25:01] -rw------- 1 boincer umatlas    987721 Jun  5 23:20 agis_schedconf.cvmfs.json
[2025-06-06 00:25:01] -rw------- 1 boincer umatlas   1598969 Jun  5 23:20 agis_ddmendpoints.agis.ALL.json
[2025-06-06 00:25:01] drwx------ 4 boincer umatlas      4096 Jun  5 23:20 pilot3
[2025-06-06 00:25:01] -rw-r--r-- 1 boincer umatlas      5868 Jun  6 00:22 init_data.xml
[2025-06-06 00:25:01] -rw------- 1 boincer umatlas 179951301 Jun  6 00:23 HITS.45006595._057122.pool.root.1
[2025-06-06 00:25:01] -rw-r--r-- 1 boincer umatlas       529 Jun  6 00:24 boinc_task_state.xml
[2025-06-06 00:25:01] -rw------- 1 boincer umatlas      1045 Jun  6 00:24 memory_monitor_summary.json
[2025-06-06 00:25:01] -rw------- 1 boincer umatlas        95 Jun  6 00:24 pilot_heartbeat.json
[2025-06-06 00:25:01] -rw------- 1 boincer umatlas    352910 Jun  6 00:24 log.45006595._057122.job.log.tgz.1
[2025-06-06 00:25:01] -rw------- 1 boincer umatlas      7774 Jun  6 00:24 heartbeat.json
[2025-06-06 00:25:01] -rw-r--r-- 1 boincer umatlas      8192 Jun  6 00:24 boinc_mmap_file
[2025-06-06 00:25:01] -rw-r--r-- 1 boincer umatlas        27 Jun  6 00:24 wrapper_checkpoint.txt
[2025-06-06 00:25:01] -rw------- 1 boincer umatlas       745 Jun  6 00:25 pilotlog.txt
[2025-06-06 00:25:01] -rw------- 1 boincer umatlas    379271 Jun  6 00:25 log.45006595._057122.job.log.1
[2025-06-06 00:25:01] -rw------- 1 boincer umatlas       357 Jun  6 00:25 output.list
[2025-06-06 00:25:01] -rw-r--r-- 1 boincer umatlas       620 Jun  6 00:25 runtime_log
[2025-06-06 00:25:01] -rw------- 1 boincer umatlas    747520 Jun  6 00:25 result.tar.gz
[2025-06-06 00:25:01] -rw-r--r-- 1 boincer umatlas      8662 Jun  6 00:25 runtime_log.err
[2025-06-06 00:25:01] -rw------- 1 boincer umatlas       659 Jun  6 00:25 j8TNDmFlZh7n9Rq4apOajLDm4fhM0noT9bVof3QYDmV5aKDmnidPdm.diag
[2025-06-06 00:25:01] -rw-r--r-- 1 boincer umatlas     21966 Jun  6 00:25 stderr.txt
[2025-06-06 00:25:01] HITS file was successfully produced:
[2025-06-06 00:25:01] -rw------- 1 boincer umatlas 179951301 Jun  6 00:23 shared/HITS.pool.root.1
[2025-06-06 00:25:01]  *** Contents of shared directory: ***
[2025-06-06 00:25:01] total 386284
[2025-06-06 00:25:01] -rw-r--r-- 2 boincer umatlas     15095 Jun  5 23:20 start_atlas.sh
[2025-06-06 00:25:01] -rw-r--r-- 2 boincer umatlas    541909 Jun  5 23:20 input.tar.gz
[2025-06-06 00:25:01] -rw-r--r-- 2 boincer umatlas 214288053 Jun  5 23:20 ATLAS.root_0
[2025-06-06 00:25:01] -rw------- 1 boincer umatlas 179951301 Jun  6 00:23 HITS.pool.root.1
[2025-06-06 00:25:01] -rw------- 1 boincer umatlas    747520 Jun  6 00:25 result.tar.gz
00:25:02 (13467): run_atlas exited; CPU time 40915.792701
00:25:02 (13467): called boinc_finish(0)

</stderr_txt>
]]>

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