Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-06 07:38:30 (5756): Detected: vboxwrapper 26206
2025-06-06 07:38:30 (5756): Detected: BOINC client v8.0.2
2025-06-06 07:38:31 (5756): Detected: VirtualBox VboxManage Interface (Version: 7.1.10)
2025-06-06 07:38:31 (5756): Successfully copied 'init_data.xml' to the shared directory.
2025-06-06 07:38:31 (5756): Create VM. (boinc_1e999c4b2d6b3271, slot#1)
2025-06-06 07:38:32 (5756): Setting Memory Size for VM. (4300MB)
2025-06-06 07:38:32 (5756): Setting CPU Count for VM. (3)
2025-06-06 07:38:32 (5756): Setting Chipset Options for VM.
2025-06-06 07:38:33 (5756): Setting Graphics Controller Options for VM.
2025-06-06 07:38:33 (5756): Setting Boot Options for VM.
2025-06-06 07:38:33 (5756): Setting Network Configuration for NAT.
2025-06-06 07:38:33 (5756): Enabling VM Network Access.
2025-06-06 07:38:34 (5756): Disabling USB Support for VM.
2025-06-06 07:38:34 (5756): Disabling COM Port Support for VM.
2025-06-06 07:38:34 (5756): Disabling LPT Port Support for VM.
2025-06-06 07:38:34 (5756): Disabling Audio Support for VM.
2025-06-06 07:38:35 (5756): Disabling Clipboard Support for VM.
2025-06-06 07:38:35 (5756): Disabling Drag and Drop Support for VM.
2025-06-06 07:38:35 (5756): Adding storage controller(s) to VM.
2025-06-06 07:38:35 (5756): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-06 07:38:38 (5756): Adding VirtualBox Guest Additions to VM.
2025-06-06 07:38:38 (5756): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-06 07:38:39 (5756): forwarding host port 61459 to guest port 80
2025-06-06 07:38:39 (5756): Enabling remote desktop for VM.
2025-06-06 07:38:39 (5756): Required extension pack not installed, remote desktop not enabled.
2025-06-06 07:38:39 (5756): Enabling shared directory for VM.
2025-06-06 07:38:40 (5756): Starting VM using VBoxManage interface. (boinc_1e999c4b2d6b3271, slot#1)
2025-06-06 07:38:45 (5756): Successfully started VM. (PID = '31172')
2025-06-06 07:38:45 (5756): Reporting VM Process ID to BOINC.
2025-06-06 07:38:45 (5756): Guest Log: BIOS: VirtualBox 7.1.10
2025-06-06 07:38:45 (5756): Guest Log: CPUID EDX: 0x178bfbff
2025-06-06 07:38:45 (5756): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-06 07:38:45 (5756): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-06 07:38:45 (5756): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-06 07:38:45 (5756): Detected: Web Application Enabled (http://localhost:61459)
2025-06-06 07:38:45 (5756): Preference change detected
2025-06-06 07:38:45 (5756): Setting CPU throttle for VM. (100%)
2025-06-06 07:38:45 (5756): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-06 07:38:47 (5756): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-06 07:38:47 (5756): Guest Log: BIOS: Booting from Hard Disk...
2025-06-06 07:38:49 (5756): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-06 07:38:49 (5756): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-06 07:38:49 (5756): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-06 07:38:53 (5756): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-06 07:38:53 (5756): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-06 07:38:56 (5756): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-06 07:38:56 (5756): Guest Log: 00:00:00.000079 main     Log opened 2025-06-06T07:38:54.685236000Z
2025-06-06 07:38:56 (5756): Guest Log: 00:00:00.000175 main     OS Product: Linux
2025-06-06 07:38:56 (5756): Guest Log: 00:00:00.000195 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-06 07:38:56 (5756): Guest Log: 00:00:00.000208 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-06 07:38:56 (5756): Guest Log: 00:00:00.000222 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-06 07:38:56 (5756): Guest Log: 00:00:00.000222 main     Process ID: 1294
2025-06-06 07:38:56 (5756): Guest Log: 00:00:00.000223 main     Package type: LINUX_64BITS_GENERIC
2025-06-06 07:38:56 (5756): Guest Log: 00:00:00.000619 main     5.2.32 r132073 started. Verbose level = 0
2025-06-06 07:38:56 (5756): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-06 07:38:56 (5756): Guest Log: [INFO] Mounting shared directory
2025-06-06 07:38:56 (5756): Guest Log: [INFO] Checking for init_data.xml
2025-06-06 07:39:00 (5756): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-06 07:39:00 (5756): Guest Log: [INFO] Detected branch: prod
2025-06-06 07:39:01 (5756): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-06 07:39:01 (5756): Guest Log: Copying input files
2025-06-06 07:39:02 (5756): Guest Log: Copied input files into RunAtlas.
2025-06-06 07:39:02 (5756): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-06 07:39:02 (5756): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-06 07:39:02 (5756): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-06 07:39:02 (5756): Guest Log: Further information can be found at the LHC@home message board.
2025-06-06 07:39:06 (5756): Guest Log: 00:00:10.004776 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 967 333 000ns (GuestNow=1 749 188 345 719 277 000 ns GuestLast=1 749 195 534 686 610 000 ns fSetTimeLastLoop=true )
2025-06-06 07:39:09 (5756): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-06 07:39:10 (5756): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-06 07:39:10 (5756): Guest Log: 2.6.3.0 1568 0 30192 146844 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-06-06 07:39:10 (5756): Guest Log: copied the webapp to /var/www
2025-06-06 07:39:10 (5756): Guest Log: ATHENA_PROC_NUMBER=3
2025-06-06 07:39:10 (5756): Guest Log: ATHENA_CORE_NUMBER=3
2025-06-06 07:39:10 (5756): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-06 07:39:10 (5756): Guest Log:  *** Starting ATLAS job. (PandaID=6668862633 taskID=44871837) ***
2025-06-06 09:18:48 (5756): Status Report: Elapsed Time: '6000.000000'
2025-06-06 09:18:48 (5756): Status Report: CPU Time: '16890.140625'
2025-06-06 10:42:57 (5756): Guest Log:  *** Job finished ***
2025-06-06 10:42:57 (5756): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-06 10:42:57 (5756): Guest Log: 2025-06-06 08:42:54,292 | INFO     | [payload] validate_post thread has finished
2025-06-06 10:42:57 (5756): Guest Log: 2025-06-06 08:42:54,513 | INFO     | [data] copytool_out thread has finished
2025-06-06 10:42:57 (5756): Guest Log: 2025-06-06 08:42:57,071 | INFO     | [data] queue_monitor thread has finished
2025-06-06 10:42:57 (5756): Guest Log: 2025-06-06 08:42:58,135 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140033049409344)>', '<ExcThread(monitor, started 140032107083520)>']
2025-06-06 10:42:57 (5756): Guest Log: 2025-06-06 08:42:59,076 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-06 10:42:57 (5756): Guest Log: 2025-06-06 08:42:59,076 | INFO     | [monitor] control thread has ended
2025-06-06 10:42:57 (5756): Guest Log: 2025-06-06 08:43:03,149 | INFO     | all workflow threads have been joined
2025-06-06 10:42:57 (5756): Guest Log: 2025-06-06 08:43:03,149 | INFO     | end of generic workflow (traces error code: 0)
2025-06-06 10:42:57 (5756): Guest Log: 2025-06-06 08:43:03,149 | INFO     | traces error code: 0
2025-06-06 10:42:57 (5756): Guest Log: 2025-06-06 08:43:03,150 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-06 10:42:57 (5756): Guest Log: 2025-06-06 08:43:03,245 [wrapper] ==== pilot stdout END ====
2025-06-06 10:42:57 (5756): Guest Log: 2025-06-06 08:43:03,248 [wrapper] ==== wrapper stdout RESUME ====
2025-06-06 10:42:57 (5756): Guest Log: 2025-06-06 08:43:03,251 [wrapper] pilotpid: 5865
2025-06-06 10:42:57 (5756): Guest Log: 2025-06-06 08:43:03,253 [wrapper] Pilot exit status: 0
2025-06-06 10:42:57 (5756): Guest Log: 2025-06-06 08:43:04,135 [wrapper] pandaids: 6668862633
2025-06-06 10:42:57 (5756): Guest Log: 2025-06-06 08:43:04,157 [wrapper] cleanup supervisor_pilot  9242 5866
2025-06-06 10:42:57 (5756): Guest Log: 2025-06-06 08:43:04,160 [wrapper] Test setup, not cleaning
2025-06-06 10:42:57 (5756): Guest Log: 2025-06-06 08:43:04,163 [wrapper] apfmon messages muted
2025-06-06 10:42:57 (5756): Guest Log: 2025-06-06 08:43:04,165 [wrapper] ==== wrapper stdout END ====
2025-06-06 10:42:57 (5756): Guest Log: 2025-06-06 08:43:04,168 [wrapper] ==== wrapper stderr END ====
2025-06-06 10:42:57 (5756): Guest Log:  *** Error codes and diagnostics ***
2025-06-06 10:42:57 (5756): Guest Log:     "exeErrorCode": 0,
2025-06-06 10:42:57 (5756): Guest Log:     "exeErrorDiag": "",
2025-06-06 10:42:57 (5756): Guest Log:     "pilotErrorCode": 0,
2025-06-06 10:42:57 (5756): Guest Log:     "pilotErrorDiag": "",
2025-06-06 10:42:57 (5756): Guest Log:  *** Listing of results directory ***
2025-06-06 10:42:57 (5756): Guest Log: total 200312
2025-06-06 10:42:57 (5756): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 28 19:15 pilot3.tar.gz
2025-06-06 10:42:57 (5756): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 28 19:47 queuedata.json
2025-06-06 10:42:57 (5756): Guest Log: -rwx------. 1 atlas atlas     37140 May 28 19:47 runpilot2-wrapper.sh
2025-06-06 10:42:57 (5756): Guest Log: -rwxr-xr-x. 1 atlas atlas      9094 Jun  6 05:39 init_data.xml
2025-06-06 10:42:57 (5756): Guest Log: -rwxr-xr-x. 1 atlas atlas    508877 Jun  6 05:39 input.tar.gz
2025-06-06 10:42:57 (5756): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  6 05:39 start_atlas.sh
2025-06-06 10:42:57 (5756): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  6 05:39 EVNT.44871834._003485.pool.root.1 -> /data/./ATLAS.root_0
2025-06-06 10:42:57 (5756): Guest Log: -rw-r--r--. 1 atlas atlas      2557 Jun  6 05:39 pandaJob.out
2025-06-06 10:42:57 (5756): Guest Log: -rw-------. 1 atlas atlas    988109 Jun  6 05:40 agis_schedconf.cvmfs.json
2025-06-06 10:42:57 (5756): Guest Log: drwx------. 4 atlas atlas      4096 Jun  6 05:40 pilot3
2025-06-06 10:42:57 (5756): Guest Log: -rw-------. 1 atlas atlas 198895750 Jun  6 08:42 HITS.44871837._089565.pool.root.1
2025-06-06 10:42:57 (5756): Guest Log: -rw-------. 1 atlas atlas        95 Jun  6 08:42 pilot_heartbeat.json
2025-06-06 10:42:57 (5756): Guest Log: -rw-------. 1 atlas atlas      1026 Jun  6 08:42 memory_monitor_summary.json
2025-06-06 10:42:57 (5756): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  6 08:42 agis_ddmendpoints.agis.ALL.json
2025-06-06 10:42:57 (5756): Guest Log: -rw-------. 1 atlas atlas    268739 Jun  6 08:42 log.44871837._089565.job.log.tgz.1
2025-06-06 10:42:57 (5756): Guest Log: -rw-------. 1 atlas atlas      7681 Jun  6 08:42 heartbeat.json
2025-06-06 10:42:57 (5756): Guest Log: -rw-------. 1 atlas atlas      4413 Jun  6 08:43 pilotlog.txt
2025-06-06 10:42:57 (5756): Guest Log: -rw-------. 1 atlas atlas    962113 Jun  6 08:43 log.44871837._089565.job.log.1
2025-06-06 10:42:57 (5756): Guest Log: -rw-------. 1 atlas atlas       357 Jun  6 08:43 output.list
2025-06-06 10:42:57 (5756): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  6 08:43 runtime_log
2025-06-06 10:42:57 (5756): Guest Log: -rw-------. 1 atlas atlas   1249280 Jun  6 08:43 result.tar.gz
2025-06-06 10:42:57 (5756): Guest Log: -rw-r--r--. 1 atlas atlas      8556 Jun  6 08:43 runtime_log.err
2025-06-06 10:42:57 (5756): Guest Log: -rw-------. 1 atlas atlas       647 Jun  6 08:43 kWkKDmxvbe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmDxcKDm5w0lKm.diag
2025-06-06 10:42:57 (5756): Guest Log: Looking for outputfile HITS.44871837._089565.pool.root.1
2025-06-06 10:42:57 (5756): Guest Log: HITS file was successfully produced
2025-06-06 10:42:57 (5756): Guest Log: -rw-------. 1 atlas atlas 198895750 Jun  6 08:42 /home/atlas/RunAtlas/HITS.44871837._089565.pool.root.1
2025-06-06 10:42:57 (5756): Guest Log: Successfully finished the ATLAS job!
2025-06-06 10:42:57 (5756): Guest Log: Copying the results back to the shared directory!
2025-06-06 10:42:57 (5756): Guest Log:  *** Contents of shared directory: ***
2025-06-06 10:42:57 (5756): Guest Log: total 416428
2025-06-06 10:42:57 (5756): Guest Log: -rwxrwxrwx. 1 root root 225731826 Jun  6 05:38 ATLAS.root_0
2025-06-06 10:42:57 (5756): Guest Log: -rwxrwxrwx. 1 root root 198895750 Jun  6 08:42 HITS.pool.root.1
2025-06-06 10:42:57 (5756): Guest Log: -rwxrwxrwx. 1 root root      9094 Jun  6 05:38 init_data.xml
2025-06-06 10:42:57 (5756): Guest Log: -rwxrwxrwx. 1 root root    508877 Jun  6 02:34 input.tar.gz
2025-06-06 10:42:57 (5756): Guest Log: -rwxrwxrwx. 1 root root   1249280 Jun  6 08:42 result.tar.gz
2025-06-06 10:42:57 (5756): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  6 02:34 start_atlas.sh
2025-06-06 10:42:57 (5756): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-06 10:42:58 (5756): VM Completion File Detected.
2025-06-06 10:42:58 (5756): Powering off VM.
2025-06-06 10:42:59 (5756): Successfully stopped VM.
2025-06-06 10:42:59 (5756): Deregistering VM. (boinc_1e999c4b2d6b3271, slot#1)
2025-06-06 10:42:59 (5756): Removing network bandwidth throttle group from VM.
2025-06-06 10:42:59 (5756): Removing VM from VirtualBox.
10:43:04 (5756): called boinc_finish(0)

</stderr_txt>
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