Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:04:25 (2518443): wrapper (7.7.26015): starting
22:04:25 (2518443): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 22:04:25] Arguments: --nthreads 8
[2025-06-05 22:04:25] Threads: 8
[2025-06-05 22:04:25] Checking for CVMFS
[2025-06-05 22:04:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 22:04:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 22:04:25] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 22:04:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 22:04:26] 2.12.6.0 861369 35055 545516 146838 0 329 38254305 40960001 9510 16776704 0 163470037 99.661 150518638 26284 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 22:04:26] CVMFS is ok
[2025-06-05 22:04:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 22:04:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 22:04:26] Further information can be found at the LHC@home message board.
[2025-06-05 22:04:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 22:04:26] Checking for apptainer binary...
[2025-06-05 22:04:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 22:04:26] Running /usr/bin/apptainer --version
[2025-06-05 22:04:26] apptainer version 1.4.1-1.el9
[2025-06-05 22:04:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 22:04:26] c7-13-33.aglt2.org
[2025-06-05 22:04:26] apptainer works
[2025-06-05 22:04:26] Set ATHENA_PROC_NUMBER=8
[2025-06-05 22:04:26] Set ATHENA_CORE_NUMBER=8
[2025-06-05 22:04:26] Starting ATLAS job with PandaID=6681489149
[2025-06-05 22:04:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 23:20:19]  *** The last 200 lines of the pilot log: ***
[2025-06-05 23:20:19]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-05 23:20:19]  replicas=None
[2025-06-05 23:20:19]  scope=mc23_13p6TeV
[2025-06-05 23:20:19]  status=None
[2025-06-05 23:20:19]  status_code=0
[2025-06-05 23:20:19]  storage_token=
[2025-06-05 23:20:19]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6681489149/log.44871837._102333.job.log.tgz.1
[2025-06-05 23:20:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/88/f6/log.44871837._102333.job.log.tgz.1
[2025-06-05 23:20:19]  workdir=None
[2025-06-05 23:20:19] ]
[2025-06-05 23:20:19] 2025-06-06 03:19:39,802 | INFO     | transferring file log.44871837._102333.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6681489149/log.44871837._102333.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-05 23:20:19] 2025-06-06 03:19:39,803 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6681489149/log.44871837._102333.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._102333.job
[2025-06-05 23:20:19] 2025-06-06 03:19:39,822 | INFO     | adding to output.list: log.44871837._102333.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/88/f6/log.44871837._102333.job.log.tg
[2025-06-05 23:20:19] 2025-06-06 03:19:39,823 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 23:20:19] 2025-06-06 03:19:39,823 | INFO     | summary of transferred files:
[2025-06-05 23:20:19] 2025-06-06 03:19:39,823 | INFO     |  -- lfn=log.44871837._102333.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 23:20:19] 2025-06-06 03:19:39,823 | INFO     | stage-out finished correctly
[2025-06-05 23:20:19] 2025-06-06 03:19:39,906 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 23:20:19] 2025-06-06 03:19:40,224 | WARNING  | process 2532083 can no longer be monitored (due to stat problems) - aborting
[2025-06-05 23:20:19] 2025-06-06 03:19:40,225 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6681489149/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 23:20:19] 2025-06-06 03:19:40,444 | INFO     | number of running child processes to parent process 2532083: 1
[2025-06-05 23:20:19] 2025-06-06 03:19:40,444 | INFO     | maximum number of monitored processes: 6
[2025-06-05 23:20:19] 2025-06-06 03:19:42,758 | INFO     | job 6681489149 has state=finished
[2025-06-05 23:20:19] 2025-06-06 03:19:42,758 | INFO     | preparing for final server update for job 6681489149 in state='finished'
[2025-06-05 23:20:19] 2025-06-06 03:19:42,808 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-05 23:20:19] 2025-06-06 03:19:42,808 | INFO     | this job has now completed (state=finished)
[2025-06-05 23:20:19] 2025-06-06 03:19:42,808 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 23:20:19] 2025-06-06 03:19:42,808 | INFO     | log transfer has been attempted: DONE
[2025-06-05 23:20:19] 2025-06-06 03:19:42,808 | INFO     | job 6681489149 has finished - writing final server update
[2025-06-05 23:20:19] 2025-06-06 03:19:42,809 | INFO     | total number of processed events: 400 (read)
[2025-06-05 23:20:19] 2025-06-06 03:19:42,809 | INFO     | executing command: lscpu
[2025-06-05 23:20:19] 2025-06-06 03:19:42,857 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 23:20:19] 2025-06-06 03:19:42,947 | INFO     | monitor loop #335: job 0:6681489149 is in state 'finished'
[2025-06-05 23:20:19] 2025-06-06 03:19:42,947 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 23:20:19] 2025-06-06 03:19:45,450 | INFO     | monitor loop #336: job 0:6681489149 is in state 'finished'
[2025-06-05 23:20:19] 2025-06-06 03:19:45,450 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 23:20:19] 2025-06-06 03:19:46,317 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 23:20:19] 2025-06-06 03:19:46,334 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3170.0313125
[2025-06-05 23:20:19] 2025-06-06 03:19:46,343 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6681489149/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 23:20:19] 2025-06-06 03:19:46,344 | INFO     | extracted standard info from prmon json
[2025-06-05 23:20:19] 2025-06-06 03:19:46,344 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 23:20:19] 2025-06-06 03:19:46,344 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 23:20:19] 2025-06-06 03:19:46,344 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 23:20:19] 2025-06-06 03:19:46,345 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 23:20:19] 2025-06-06 03:19:46,346 | INFO     | fitting pss+swap vs Time
[2025-06-05 23:20:19] 2025-06-06 03:19:46,347 | INFO     | sum of square deviations: 93240818.0
[2025-06-05 23:20:19] 2025-06-06 03:19:46,347 | INFO     | sum of deviations: -369079828.9999999
[2025-06-05 23:20:19] 2025-06-06 03:19:46,347 | INFO     | mean x: 1749177822.0
[2025-06-05 23:20:19] 2025-06-06 03:19:46,347 | INFO     | mean y: 2244611.268656716
[2025-06-05 23:20:19] 2025-06-06 03:19:46,347 | INFO     | -- intersect: 6926103338.402005
[2025-06-05 23:20:19] 2025-06-06 03:19:46,347 | INFO     | intersect: 6926103338.402005
[2025-06-05 23:20:19] 2025-06-06 03:19:46,348 | INFO     | chi2: 0.01961490043105654
[2025-06-05 23:20:19] 2025-06-06 03:19:46,348 | INFO     | -- intersect: 6926103338.402005
[2025-06-05 23:20:19] 2025-06-06 03:19:46,348 | INFO     | current memory leak: -3.96 B/s (using 67 data points, chi2=0.02)
[2025-06-05 23:20:19] 2025-06-06 03:19:46,348 | INFO     | could have reported an average CPU frequency of 3193 MHz (6 samples)
[2025-06-05 23:20:19] 2025-06-06 03:19:46,348 | INFO     | ..............................
[2025-06-05 23:20:19] 2025-06-06 03:19:46,348 | INFO     | . Timing measurements:
[2025-06-05 23:20:19] 2025-06-06 03:19:46,348 | INFO     | . get job = 0 s
[2025-06-05 23:20:19] 2025-06-06 03:19:46,348 | INFO     | . initial setup = 3 s
[2025-06-05 23:20:19] 2025-06-06 03:19:46,348 | INFO     | . payload setup = 6 s
[2025-06-05 23:20:19] 2025-06-06 03:19:46,348 | INFO     | . stage-in = 0 s
[2025-06-05 23:20:19] 2025-06-06 03:19:46,348 | INFO     | . payload execution = 4476 s
[2025-06-05 23:20:19] 2025-06-06 03:19:46,349 | INFO     | . stage-out = 0 s
[2025-06-05 23:20:19] 2025-06-06 03:19:46,349 | INFO     | . log creation = 0 s
[2025-06-05 23:20:19] 2025-06-06 03:19:46,349 | INFO     | ..............................
[2025-06-05 23:20:19] 2025-06-06 03:19:46,404 | INFO     | 
[2025-06-05 23:20:19] 2025-06-06 03:19:46,405 | INFO     | job summary report
[2025-06-05 23:20:19] 2025-06-06 03:19:46,405 | INFO     | --------------------------------------------------
[2025-06-05 23:20:19] 2025-06-06 03:19:46,405 | INFO     | PanDA job id: 6681489149
[2025-06-05 23:20:19] 2025-06-06 03:19:46,405 | INFO     | task id: 44871837
[2025-06-05 23:20:19] 2025-06-06 03:19:46,405 | INFO     | errors: (none)
[2025-06-05 23:20:19] 2025-06-06 03:19:46,405 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 23:20:19] 2025-06-06 03:19:46,405 | INFO     | pilot state: finished 
[2025-06-05 23:20:19] 2025-06-06 03:19:46,405 | INFO     | transexitcode: 0
[2025-06-05 23:20:19] 2025-06-06 03:19:46,405 | INFO     | exeerrorcode: 0
[2025-06-05 23:20:19] 2025-06-06 03:19:46,405 | INFO     | exeerrordiag: 
[2025-06-05 23:20:19] 2025-06-06 03:19:46,405 | INFO     | exitcode: 0
[2025-06-05 23:20:19] 2025-06-06 03:19:46,405 | INFO     | exitmsg: OK
[2025-06-05 23:20:19] 2025-06-06 03:19:46,405 | INFO     | cpuconsumptiontime: 32864 s
[2025-06-05 23:20:19] 2025-06-06 03:19:46,406 | INFO     | nevents: 400
[2025-06-05 23:20:19] 2025-06-06 03:19:46,406 | INFO     | neventsw: 0
[2025-06-05 23:20:19] 2025-06-06 03:19:46,406 | INFO     | pid: 2532083
[2025-06-05 23:20:19] 2025-06-06 03:19:46,406 | INFO     | pgrp: 2532083
[2025-06-05 23:20:19] 2025-06-06 03:19:46,406 | INFO     | corecount: 8
[2025-06-05 23:20:19] 2025-06-06 03:19:46,406 | INFO     | event service: False
[2025-06-05 23:20:19] 2025-06-06 03:19:46,406 | INFO     | sizes: {0: 2397732, 5: 2397994, 11: 2398050, 4486: 2424304, 4487: 2433301, 4493: 2433439}
[2025-06-05 23:20:19] 2025-06-06 03:19:46,406 | INFO     | --------------------------------------------------
[2025-06-05 23:20:19] 2025-06-06 03:19:46,406 | INFO     | 
[2025-06-05 23:20:19] 2025-06-06 03:19:46,406 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 23:20:19] 2025-06-06 03:19:46,429 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 23:20:19] 2025-06-06 03:19:46,429 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 23:20:19] 2025-06-06 03:19:46,429 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 23:20:19] 2025-06-06 03:19:46,429 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 23:20:19] 2025-06-06 03:19:46,429 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 23:20:19] 2025-06-06 03:19:46,429 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 23:20:19] 2025-06-06 03:19:46,429 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 23:20:19] 2025-06-06 03:19:46,429 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 23:20:19] 2025-06-06 03:19:46,429 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 23:20:19] 2025-06-06 03:19:46,429 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 23:20:19] 2025-06-06 03:19:46,430 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 23:20:19] 2025-06-06 03:19:46,430 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 23:20:19] 2025-06-06 03:19:46,430 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 23:20:19] 2025-06-06 03:19:46,430 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 23:20:19] 2025-06-06 03:19:46,430 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 23:20:19] 2025-06-06 03:19:46,430 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 23:20:19] 2025-06-06 03:19:46,430 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 23:20:19] 2025-06-06 03:19:46,430 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 23:20:19] 2025-06-06 03:19:46,430 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 23:20:19] 2025-06-06 03:19:46,430 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 23:20:19] 2025-06-06 03:19:46,430 | INFO     | job 6681489149 has completed (purged errors)
[2025-06-05 23:20:19] 2025-06-06 03:19:46,430 | INFO     | overall cleanup function is called
[2025-06-05 23:20:19] 2025-06-06 03:19:47,438 | INFO     | --- collectZombieJob: --- 10, [2532083]
[2025-06-05 23:20:19] 2025-06-06 03:19:47,438 | INFO     | zombie collector waiting for pid 2532083
[2025-06-05 23:20:19] 2025-06-06 03:19:47,438 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 23:20:19] 2025-06-06 03:19:47,438 | INFO     | collected zombie processes
[2025-06-05 23:20:19] 2025-06-06 03:19:47,438 | INFO     | will attempt to kill all subprocesses of pid=2532083
[2025-06-05 23:20:19] 2025-06-06 03:19:47,746 | INFO     | process IDs to be killed: [2532083] (in reverse order)
[2025-06-05 23:20:19] 2025-06-06 03:19:47,842 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 23:20:19] 2025-06-06 03:19:47,842 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 23:20:19] 2025-06-06 03:19:47,856 | INFO     | did not find any defunct processes belonging to 2532083
[2025-06-05 23:20:19] 2025-06-06 03:19:47,871 | INFO     | did not find any defunct processes belonging to 2532083
[2025-06-05 23:20:19] 2025-06-06 03:19:47,871 | INFO     | ready for new job
[2025-06-05 23:20:19] 2025-06-06 03:19:47,871 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 23:20:19] 2025-06-06 03:19:47,872 | INFO     | ***************************************
[2025-06-05 23:20:19] 2025-06-06 03:19:47,872 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-05 23:20:19] 2025-06-06 03:19:47,872 | INFO     | ***************************************
[2025-06-05 23:20:19] 2025-06-06 03:19:47,872 | INFO     | 
[2025-06-05 23:20:19] 2025-06-06 03:19:47,887 | INFO     | architecture information:
[2025-06-05 23:20:19] 2025-06-06 03:19:47,888 | INFO     | executing command: cat /etc/os-release
[2025-06-05 23:20:19] 2025-06-06 03:19:47,902 | INFO     | cat /etc/os-release:
[2025-06-05 23:20:19] NAME="CentOS Linux"
[2025-06-05 23:20:19] VERSION="7 (Core)"
[2025-06-05 23:20:19] ID="centos"
[2025-06-05 23:20:19] ID_LIKE="rhel fedora"
[2025-06-05 23:20:19] VERSION_ID="7"
[2025-06-05 23:20:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 23:20:19] ANSI_COLOR="0;31"
[2025-06-05 23:20:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 23:20:19] HOME_URL="https://www.centos.org/"
[2025-06-05 23:20:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 23:20:19] 
[2025-06-05 23:20:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 23:20:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 23:20:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 23:20:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 23:20:19] 
[2025-06-05 23:20:19] 2025-06-06 03:19:47,902 | INFO     | ***************************************
[2025-06-05 23:20:19] 2025-06-06 03:19:48,405 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 23:20:19] 2025-06-06 03:19:48,417 | INFO     | sufficient remaining disk space (86486548480 B)
[2025-06-05 23:20:19] 2025-06-06 03:19:48,417 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 23:20:19] 2025-06-06 03:19:48,418 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 23:20:19] 2025-06-06 03:19:48,418 | INFO     | update_server=False
[2025-06-05 23:20:19] 2025-06-06 03:19:48,418 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 23:20:19] 2025-06-06 03:19:48,418 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 23:20:19] 2025-06-06 03:19:48,734 | INFO     | all data control threads have been joined
[2025-06-05 23:20:19] 2025-06-06 03:19:48,954 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 23:20:19] 2025-06-06 03:19:48,954 | INFO     | aborting loop
[2025-06-05 23:20:19] 2025-06-06 03:19:49,418 | INFO     | [job] retrieve thread has finished
[2025-06-05 23:20:19] 2025-06-06 03:19:49,694 | INFO     | all job control threads have been joined
[2025-06-05 23:20:19] 2025-06-06 03:19:49,695 | INFO     | all payload control threads have been joined
[2025-06-05 23:20:19] 2025-06-06 03:19:49,709 | INFO     | [payload] validate_post thread has finished
[2025-06-05 23:20:19] 2025-06-06 03:19:49,739 | INFO     | [data] control thread has finished
[2025-06-05 23:20:19] 2025-06-06 03:19:49,957 | INFO     | [job] job monitor thread has finished
[2025-06-05 23:20:19] 2025-06-06 03:19:50,042 | INFO     | [payload] failed_post thread has finished
[2025-06-05 23:20:19] 2025-06-06 03:19:50,050 | INFO     | [job] validate thread has finished
[2025-06-05 23:20:19] 2025-06-06 03:19:50,249 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 23:20:19] 2025-06-06 03:19:50,294 | INFO     | [data] copytool_in thread has finished
[2025-06-05 23:20:19] 2025-06-06 03:19:50,384 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 23:20:19] 2025-06-06 03:19:50,420 | INFO     | [data] copytool_out thread has finished
[2025-06-05 23:20:19] 2025-06-06 03:19:50,492 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 23:20:19] 2025-06-06 03:19:50,542 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 23:20:19] 2025-06-06 03:19:50,701 | INFO     | [job] control thread has finished
[2025-06-05 23:20:19] 2025-06-06 03:19:50,701 | INFO     | [payload] control thread has finished
[2025-06-05 23:20:19] 2025-06-06 03:19:51,415 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 23:20:19] 2025-06-06 03:19:52,420 | INFO     | [job] queue monitor thread has finished
[2025-06-05 23:20:19] 2025-06-06 03:19:54,497 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 23:20:19] 2025-06-06 03:19:58,964 | INFO     | job.realtimelogging is not enabled
[2025-06-05 23:20:19] 2025-06-06 03:19:59,970 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 23:20:19] 2025-06-06 03:20:02,031 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140620749211456)>', '<ExcThread(monitor, started 140620467242752)>']
[2025-06-05 23:20:19] 2025-06-06 03:20:07,058 | INFO     | all workflow threads have been joined
[2025-06-05 23:20:19] 2025-06-06 03:20:07,058 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 23:20:19] 2025-06-06 03:20:07,058 | INFO     | traces error code: 0
[2025-06-05 23:20:19] 2025-06-06 03:20:07,059 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 23:20:19] 2025-06-06 03:20:19,411 | INFO     | PID=2523055 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 23:20:19] 2025-06-06 03:20:19,411 | INFO     | .. there are 12 such processes running
[2025-06-05 23:20:19] 2025-06-06 03:20:19,412 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 23:20:19] 2025-06-06 03:20:19,412 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 23:20:19] 2025-06-06 03:20:19,412 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 23:20:19] 2025-06-06 03:20:19,412 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 23:20:19] 2025-06-06 03:20:19,412 | INFO     | [monitor] control thread has ended
[2025-06-05 23:20:19] 2025-06-06 03:20:19,506 [wrapper] ==== pilot stdout END ====
[2025-06-05 23:20:19] 2025-06-06 03:20:19,508 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 23:20:19] 2025-06-06 03:20:19,510 [wrapper] pilotpid: 2523055
[2025-06-05 23:20:19] 2025-06-06 03:20:19,511 [wrapper] Pilot exit status: 0
[2025-06-05 23:20:19] 2025-06-06 03:20:19,524 [wrapper] pandaids: 6681489149
[2025-06-05 23:20:19] 2025-06-06 03:20:19,604 [wrapper] cleanup supervisor_pilot 3129111 2523056
[2025-06-05 23:20:19] 2025-06-06 03:20:19,606 [wrapper] Test setup, not cleaning
[2025-06-05 23:20:19] 2025-06-06 03:20:19,608 [wrapper] apfmon messages muted
[2025-06-05 23:20:19] 2025-06-06 03:20:19,610 [wrapper] ==== wrapper stdout END ====
[2025-06-05 23:20:19] 2025-06-06 03:20:19,612 [wrapper] ==== wrapper stderr END ====
[2025-06-05 23:20:19]  *** Error codes and diagnostics ***
[2025-06-05 23:20:19]     "exeErrorCode": 0,
[2025-06-05 23:20:19]     "exeErrorDiag": "",
[2025-06-05 23:20:19]     "pilotErrorCode": 0,
[2025-06-05 23:20:19]     "pilotErrorDiag": "",
[2025-06-05 23:20:19]  *** Listing of results directory ***
[2025-06-05 23:20:19] total 419608
[2025-06-05 23:20:19] -rwx------. 1 boincer umatlas     37140 Jun  5 22:03 runpilot2-wrapper.sh
[2025-06-05 23:20:19] -rw-r--r--. 1 boincer umatlas      5112 Jun  5 22:03 queuedata.json
[2025-06-05 23:20:19] -rw-r--r--. 1 boincer umatlas    529402 Jun  5 22:03 pilot3.tar.gz
[2025-06-05 23:20:19] -rw-r--r--. 1 boincer umatlas       100 Jun  5 22:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 23:20:19] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 22:04 run_atlas
[2025-06-05 23:20:19] -rw-r--r--. 1 boincer umatlas       105 Jun  5 22:04 job.xml
[2025-06-05 23:20:19] -rw-r--r--. 2 boincer umatlas 226683454 Jun  5 22:04 EVNT.44871834._001205.pool.root.1
[2025-06-05 23:20:19] -rw-r--r--. 2 boincer umatlas     15095 Jun  5 22:04 start_atlas.sh
[2025-06-05 23:20:19] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 22:04 shared
[2025-06-05 23:20:19] -rw-r--r--. 2 boincer umatlas    541900 Jun  5 22:04 input.tar.gz
[2025-06-05 23:20:19] -rw-r--r--. 1 boincer umatlas         0 Jun  5 22:04 boinc_lockfile
[2025-06-05 23:20:19] -rw-r--r--. 1 boincer umatlas      2558 Jun  5 22:04 pandaJob.out
[2025-06-05 23:20:19] -rw-------. 1 boincer umatlas    987721 Jun  5 22:04 agis_schedconf.cvmfs.json
[2025-06-05 23:20:19] -rw-------. 1 boincer umatlas   1598969 Jun  5 22:04 agis_ddmendpoints.agis.ALL.json
[2025-06-05 23:20:19] drwx------. 4 boincer umatlas      4096 Jun  5 22:04 pilot3
[2025-06-05 23:20:19] -rw-r--r--. 1 boincer umatlas      6896 Jun  5 23:12 init_data.xml
[2025-06-05 23:20:19] -rw-r--r--. 1 boincer umatlas       529 Jun  5 23:19 boinc_task_state.xml
[2025-06-05 23:20:19] -rw-------. 1 boincer umatlas 197586411 Jun  5 23:19 HITS.44871837._102333.pool.root.1
[2025-06-05 23:20:19] -rw-------. 1 boincer umatlas      1034 Jun  5 23:19 memory_monitor_summary.json
[2025-06-05 23:20:19] -rw-------. 1 boincer umatlas    305203 Jun  5 23:19 log.44871837._102333.job.log.tgz.1
[2025-06-05 23:20:19] -rw-------. 1 boincer umatlas      7702 Jun  5 23:19 heartbeat.json
[2025-06-05 23:20:19] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 23:20 boinc_mmap_file
[2025-06-05 23:20:19] -rw-r--r--. 1 boincer umatlas        27 Jun  5 23:20 wrapper_checkpoint.txt
[2025-06-05 23:20:19] -rw-------. 1 boincer umatlas        95 Jun  5 23:20 pilot_heartbeat.json
[2025-06-05 23:20:19] -rw-------. 1 boincer umatlas       823 Jun  5 23:20 pilotlog.txt
[2025-06-05 23:20:19] -rw-------. 1 boincer umatlas    449281 Jun  5 23:20 log.44871837._102333.job.log.1
[2025-06-05 23:20:19] -rw-------. 1 boincer umatlas       357 Jun  5 23:20 output.list
[2025-06-05 23:20:19] -rw-r--r--. 1 boincer umatlas       620 Jun  5 23:20 runtime_log
[2025-06-05 23:20:19] -rw-------. 1 boincer umatlas    778240 Jun  5 23:20 result.tar.gz
[2025-06-05 23:20:19] -rw-------. 1 boincer umatlas       653 Jun  5 23:20 ZNoLDmebbh7n9Rq4apOajLDm4fhM0noT9bVof3QYDmZ5aKDmwtc9pm.diag
[2025-06-05 23:20:19] -rw-r--r--. 1 boincer umatlas      8660 Jun  5 23:20 runtime_log.err
[2025-06-05 23:20:19] -rw-r--r--. 1 boincer umatlas     21887 Jun  5 23:20 stderr.txt
[2025-06-05 23:20:19] HITS file was successfully produced:
[2025-06-05 23:20:19] -rw-------. 1 boincer umatlas 197586411 Jun  5 23:19 shared/HITS.pool.root.1
[2025-06-05 23:20:19]  *** Contents of shared directory: ***
[2025-06-05 23:20:19] total 415644
[2025-06-05 23:20:19] -rw-r--r--. 2 boincer umatlas 226683454 Jun  5 22:04 ATLAS.root_0
[2025-06-05 23:20:19] -rw-r--r--. 2 boincer umatlas     15095 Jun  5 22:04 start_atlas.sh
[2025-06-05 23:20:19] -rw-r--r--. 2 boincer umatlas    541900 Jun  5 22:04 input.tar.gz
[2025-06-05 23:20:19] -rw-------. 1 boincer umatlas 197586411 Jun  5 23:19 HITS.pool.root.1
[2025-06-05 23:20:19] -rw-------. 1 boincer umatlas    778240 Jun  5 23:20 result.tar.gz
23:20:21 (2518443): run_atlas exited; CPU time 32890.578866
23:20:21 (2518443): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN