Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:57:12 (24836): wrapper (7.7.26015): starting
21:57:12 (24836): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 21:57:12] Arguments: --nthreads 12
[2025-06-05 21:57:12] Threads: 12
[2025-06-05 21:57:12] Checking for CVMFS
[2025-06-05 21:57:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 21:57:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 21:57:12] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 21:57:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 21:57:13] 2.11.2.0 2949 37931 83580 146838 2 1 14168118 20275200 1 130560 0 15950191 99.986 5932766 7290 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-05 21:57:13] CVMFS is ok
[2025-06-05 21:57:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 21:57:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 21:57:13] Further information can be found at the LHC@home message board.
[2025-06-05 21:57:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 21:57:13] Checking for apptainer binary...
[2025-06-05 21:57:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 21:57:13] Running /usr/bin/apptainer --version
[2025-06-05 21:57:13] apptainer version 1.3.2-1.el7
[2025-06-05 21:57:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 21:57:14] c-205-13.aglt2.org
[2025-06-05 21:57:14] apptainer works
[2025-06-05 21:57:14] Set ATHENA_PROC_NUMBER=12
[2025-06-05 21:57:14] Set ATHENA_CORE_NUMBER=12
[2025-06-05 21:57:14] Starting ATLAS job with PandaID=6678391469
[2025-06-05 21:57:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 22:59:34]  *** The last 200 lines of the pilot log: ***
[2025-06-05 22:59:34]  scope=mc23_13p6TeV
[2025-06-05 22:59:34]  status=None
[2025-06-05 22:59:34]  status_code=0
[2025-06-05 22:59:34]  storage_token=
[2025-06-05 22:59:34]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678391469/log.45006595._054831.job.log.tgz.1
[2025-06-05 22:59:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a3/4f/log.45006595._054831.job.log.tgz.1
[2025-06-05 22:59:34]  workdir=None
[2025-06-05 22:59:34] ]
[2025-06-05 22:59:34] 2025-06-06 02:59:17,393 | INFO     | transferring file log.45006595._054831.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678391469/log.45006595._054831.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-05 22:59:34] 2025-06-06 02:59:17,394 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678391469/log.45006595._054831.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._054831.job
[2025-06-05 22:59:34] 2025-06-06 02:59:17,417 | INFO     | adding to output.list: log.45006595._054831.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a3/4f/log.45006595._054831.job.log.tg
[2025-06-05 22:59:34] 2025-06-06 02:59:17,418 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 22:59:34] 2025-06-06 02:59:17,418 | INFO     | summary of transferred files:
[2025-06-05 22:59:34] 2025-06-06 02:59:17,419 | INFO     |  -- lfn=log.45006595._054831.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 22:59:34] 2025-06-06 02:59:17,419 | INFO     | stage-out finished correctly
[2025-06-05 22:59:34] 2025-06-06 02:59:17,506 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 22:59:34] 2025-06-06 02:59:17,588 | INFO     | job 6678391469 has state=finished
[2025-06-05 22:59:34] 2025-06-06 02:59:17,589 | INFO     | preparing for final server update for job 6678391469 in state='finished'
[2025-06-05 22:59:34] 2025-06-06 02:59:17,589 | INFO     | this job has now completed (state=finished)
[2025-06-05 22:59:34] 2025-06-06 02:59:17,589 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 22:59:34] 2025-06-06 02:59:17,589 | INFO     | log transfer has been attempted: DONE
[2025-06-05 22:59:34] 2025-06-06 02:59:17,590 | INFO     | job 6678391469 has finished - writing final server update
[2025-06-05 22:59:34] 2025-06-06 02:59:17,590 | INFO     | total number of processed events: 400 (read)
[2025-06-05 22:59:34] 2025-06-06 02:59:17,592 | INFO     | executing command: lscpu
[2025-06-05 22:59:34] 2025-06-06 02:59:17,620 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 22:59:34] 2025-06-06 02:59:20,460 | WARNING  | process 2543 can no longer be monitored (due to stat problems) - aborting
[2025-06-05 22:59:34] 2025-06-06 02:59:20,460 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678391469/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 22:59:34] 2025-06-06 02:59:20,461 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678391469/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 22:59:34] 2025-06-06 02:59:20,462 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3957351 B
[2025-06-05 22:59:34] 2025-06-06 02:59:20,462 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15540 B
[2025-06-05 22:59:34] 2025-06-06 02:59:20,462 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 22:59:34] 2025-06-06 02:59:22,241 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-05 22:59:34] 2025-06-06 02:59:22,241 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678391469/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 22:59:34] 2025-06-06 02:59:22,246 | INFO     | extracted standard info from prmon json
[2025-06-05 22:59:34] 2025-06-06 02:59:22,247 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 22:59:34] 2025-06-06 02:59:22,247 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 22:59:34] 2025-06-06 02:59:22,247 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 22:59:34] 2025-06-06 02:59:22,248 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 22:59:34] 2025-06-06 02:59:22,250 | INFO     | fitting pss+swap vs Time
[2025-06-05 22:59:34] 2025-06-06 02:59:22,250 | INFO     | sum of square deviations: 48810217.5
[2025-06-05 22:59:34] 2025-06-06 02:59:22,250 | INFO     | sum of deviations: -1200728514.0
[2025-06-05 22:59:34] 2025-06-06 02:59:22,250 | INFO     | mean x: 1749177000.5
[2025-06-05 22:59:34] 2025-06-06 02:59:22,250 | INFO     | mean y: 2677178.4814814813
[2025-06-05 22:59:34] 2025-06-06 02:59:22,251 | INFO     | -- intersect: 43032329741.15122
[2025-06-05 22:59:34] 2025-06-06 02:59:22,251 | INFO     | intersect: 43032329741.15122
[2025-06-05 22:59:34] 2025-06-06 02:59:22,251 | INFO     | chi2: 0.03567589457216371
[2025-06-05 22:59:34] 2025-06-06 02:59:22,251 | INFO     | -- intersect: 43032329741.15122
[2025-06-05 22:59:34] 2025-06-06 02:59:22,251 | INFO     | current memory leak: -24.60 B/s (using 54 data points, chi2=0.04)
[2025-06-05 22:59:34] 2025-06-06 02:59:22,252 | INFO     | ..............................
[2025-06-05 22:59:34] 2025-06-06 02:59:22,252 | INFO     | . Timing measurements:
[2025-06-05 22:59:34] 2025-06-06 02:59:22,252 | INFO     | . get job = 0 s
[2025-06-05 22:59:34] 2025-06-06 02:59:22,252 | INFO     | . initial setup = 2 s
[2025-06-05 22:59:34] 2025-06-06 02:59:22,252 | INFO     | . payload setup = 9 s
[2025-06-05 22:59:34] 2025-06-06 02:59:22,252 | INFO     | . stage-in = 0 s
[2025-06-05 22:59:34] 2025-06-06 02:59:22,252 | INFO     | . payload execution = 3678 s
[2025-06-05 22:59:34] 2025-06-06 02:59:22,253 | INFO     | . stage-out = 0 s
[2025-06-05 22:59:34] 2025-06-06 02:59:22,253 | INFO     | . log creation = 0 s
[2025-06-05 22:59:34] 2025-06-06 02:59:22,253 | INFO     | ..............................
[2025-06-05 22:59:34] 2025-06-06 02:59:22,273 | INFO     | sufficient remaining disk space (29417799680 B)
[2025-06-05 22:59:34] 2025-06-06 02:59:22,289 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-05 22:59:34] 2025-06-06 02:59:22,338 | INFO     | 
[2025-06-05 22:59:34] 2025-06-06 02:59:22,338 | INFO     | job summary report
[2025-06-05 22:59:34] 2025-06-06 02:59:22,339 | INFO     | --------------------------------------------------
[2025-06-05 22:59:34] 2025-06-06 02:59:22,339 | INFO     | PanDA job id: 6678391469
[2025-06-05 22:59:34] 2025-06-06 02:59:22,339 | INFO     | task id: 45006595
[2025-06-05 22:59:34] 2025-06-06 02:59:22,339 | INFO     | errors: (none)
[2025-06-05 22:59:34] 2025-06-06 02:59:22,339 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 22:59:34] 2025-06-06 02:59:22,339 | INFO     | pilot state: finished 
[2025-06-05 22:59:34] 2025-06-06 02:59:22,339 | INFO     | transexitcode: 0
[2025-06-05 22:59:34] 2025-06-06 02:59:22,339 | INFO     | exeerrorcode: 0
[2025-06-05 22:59:34] 2025-06-06 02:59:22,340 | INFO     | exeerrordiag: 
[2025-06-05 22:59:34] 2025-06-06 02:59:22,340 | INFO     | exitcode: 0
[2025-06-05 22:59:34] 2025-06-06 02:59:22,340 | INFO     | exitmsg: OK
[2025-06-05 22:59:34] 2025-06-06 02:59:22,340 | INFO     | cpuconsumptiontime: 39474 s
[2025-06-05 22:59:34] 2025-06-06 02:59:22,340 | INFO     | nevents: 400
[2025-06-05 22:59:34] 2025-06-06 02:59:22,340 | INFO     | neventsw: 0
[2025-06-05 22:59:34] 2025-06-06 02:59:22,340 | INFO     | pid: 2543
[2025-06-05 22:59:34] 2025-06-06 02:59:22,341 | INFO     | pgrp: 2543
[2025-06-05 22:59:34] 2025-06-06 02:59:22,341 | INFO     | corecount: 12
[2025-06-05 22:59:34] 2025-06-06 02:59:22,341 | INFO     | event service: False
[2025-06-05 22:59:34] 2025-06-06 02:59:22,341 | INFO     | sizes: {0: 2397115, 1: 2397370, 6: 2397576, 12: 2397604, 3692: 2423171, 3694: 2432296, 3698: 2432410}
[2025-06-05 22:59:34] 2025-06-06 02:59:22,341 | INFO     | --------------------------------------------------
[2025-06-05 22:59:34] 2025-06-06 02:59:22,341 | INFO     | 
[2025-06-05 22:59:34] 2025-06-06 02:59:22,341 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 22:59:34] 2025-06-06 02:59:22,345 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6678391469: 4249837 B (within 2537553920 B limit)
[2025-06-05 22:59:34] 2025-06-06 02:59:22,345 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6678391469/HITS.45006595._054831.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-05 22:59:34] 2025-06-06 02:59:22,346 | INFO     | total size of present files: 0 B (workdir size: 4249837 B)
[2025-06-05 22:59:34] 2025-06-06 02:59:22,346 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6678391469/HITS.45006595._054831.pool.root.1 since it does not exist
[2025-06-05 22:59:34] 2025-06-06 02:59:22,364 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 22:59:34] 2025-06-06 02:59:22,365 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 22:59:34] 2025-06-06 02:59:22,365 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 22:59:34] 2025-06-06 02:59:22,365 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 22:59:34] 2025-06-06 02:59:22,365 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 22:59:34] 2025-06-06 02:59:22,365 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 22:59:34] 2025-06-06 02:59:22,366 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 22:59:34] 2025-06-06 02:59:22,366 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 22:59:34] 2025-06-06 02:59:22,366 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 22:59:34] 2025-06-06 02:59:22,366 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 22:59:34] 2025-06-06 02:59:22,366 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 22:59:34] 2025-06-06 02:59:22,366 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 22:59:34] 2025-06-06 02:59:22,367 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 22:59:34] 2025-06-06 02:59:22,367 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 22:59:34] 2025-06-06 02:59:22,367 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 22:59:34] 2025-06-06 02:59:22,367 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 22:59:34] 2025-06-06 02:59:22,367 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 22:59:34] 2025-06-06 02:59:22,367 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 22:59:34] 2025-06-06 02:59:22,368 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 22:59:34] 2025-06-06 02:59:22,368 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 22:59:34] 2025-06-06 02:59:22,368 | INFO     | job 6678391469 has completed (purged errors)
[2025-06-05 22:59:34] 2025-06-06 02:59:22,368 | INFO     | overall cleanup function is called
[2025-06-05 22:59:34] 2025-06-06 02:59:22,438 | INFO     | number of running child processes to parent process 2543: 1
[2025-06-05 22:59:34] 2025-06-06 02:59:22,438 | INFO     | maximum number of monitored processes: 6
[2025-06-05 22:59:34] 2025-06-06 02:59:22,438 | INFO     | aborting job monitoring since job object (job id=6678391469) has expired
[2025-06-05 22:59:34] 2025-06-06 02:59:23,376 | INFO     | --- collectZombieJob: --- 10, [2543]
[2025-06-05 22:59:34] 2025-06-06 02:59:23,377 | INFO     | zombie collector waiting for pid 2543
[2025-06-05 22:59:34] 2025-06-06 02:59:23,377 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 22:59:34] 2025-06-06 02:59:23,377 | INFO     | collected zombie processes
[2025-06-05 22:59:34] 2025-06-06 02:59:23,377 | INFO     | will attempt to kill all subprocesses of pid=2543
[2025-06-05 22:59:34] 2025-06-06 02:59:23,465 | INFO     | process IDs to be killed: [2543] (in reverse order)
[2025-06-05 22:59:34] 2025-06-06 02:59:23,520 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 22:59:34] 2025-06-06 02:59:23,520 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 22:59:34] 2025-06-06 02:59:23,523 | INFO     | did not find any defunct processes belonging to 2543
[2025-06-05 22:59:34] 2025-06-06 02:59:23,526 | INFO     | did not find any defunct processes belonging to 2543
[2025-06-05 22:59:34] 2025-06-06 02:59:23,526 | INFO     | ready for new job
[2025-06-05 22:59:34] 2025-06-06 02:59:23,526 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 22:59:34] 2025-06-06 02:59:23,527 | INFO     | **************************************
[2025-06-05 22:59:34] 2025-06-06 02:59:23,527 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 22:59:34] 2025-06-06 02:59:23,527 | INFO     | **************************************
[2025-06-05 22:59:34] 2025-06-06 02:59:23,528 | INFO     | 
[2025-06-05 22:59:34] 2025-06-06 02:59:23,528 | INFO     | architecture information:
[2025-06-05 22:59:34] 2025-06-06 02:59:23,529 | INFO     | executing command: cat /etc/os-release
[2025-06-05 22:59:34] 2025-06-06 02:59:23,545 | INFO     | cat /etc/os-release:
[2025-06-05 22:59:34] NAME="CentOS Linux"
[2025-06-05 22:59:34] VERSION="7 (Core)"
[2025-06-05 22:59:34] ID="centos"
[2025-06-05 22:59:34] ID_LIKE="rhel fedora"
[2025-06-05 22:59:34] VERSION_ID="7"
[2025-06-05 22:59:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 22:59:34] ANSI_COLOR="0;31"
[2025-06-05 22:59:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 22:59:34] HOME_URL="https://www.centos.org/"
[2025-06-05 22:59:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 22:59:34] 
[2025-06-05 22:59:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 22:59:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 22:59:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 22:59:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 22:59:34] 
[2025-06-05 22:59:34] 2025-06-06 02:59:23,545 | INFO     | **************************************
[2025-06-05 22:59:34] 2025-06-06 02:59:24,048 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 22:59:34] 2025-06-06 02:59:24,065 | INFO     | sufficient remaining disk space (29421993984 B)
[2025-06-05 22:59:34] 2025-06-06 02:59:24,066 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 22:59:34] 2025-06-06 02:59:24,066 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 22:59:34] 2025-06-06 02:59:24,066 | INFO     | update_server=False
[2025-06-05 22:59:34] 2025-06-06 02:59:24,066 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 22:59:34] 2025-06-06 02:59:24,066 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 22:59:34] 2025-06-06 02:59:24,067 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 22:59:34] 2025-06-06 02:59:24,067 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 22:59:34] 2025-06-06 02:59:24,067 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 22:59:34] 2025-06-06 02:59:24,068 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 22:59:34] 2025-06-06 02:59:24,068 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 22:59:34] 2025-06-06 02:59:24,068 | INFO     | aborting loop
[2025-06-05 22:59:34] 2025-06-06 02:59:24,068 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 22:59:34] 2025-06-06 02:59:24,623 | INFO     | all data control threads have been joined
[2025-06-05 22:59:34] 2025-06-06 02:59:24,709 | INFO     | all payload control threads have been joined
[2025-06-05 22:59:34] 2025-06-06 02:59:25,072 | INFO     | [job] retrieve thread has finished
[2025-06-05 22:59:34] 2025-06-06 02:59:25,072 | INFO     | [job] queue monitor thread has finished
[2025-06-05 22:59:34] 2025-06-06 02:59:25,074 | INFO     | [job] job monitor thread has finished
[2025-06-05 22:59:34] 2025-06-06 02:59:25,453 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 22:59:34] 2025-06-06 02:59:25,516 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 22:59:34] 2025-06-06 02:59:25,556 | INFO     | [job] validate thread has finished
[2025-06-05 22:59:34] 2025-06-06 02:59:25,611 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 22:59:34] 2025-06-06 02:59:25,629 | INFO     | [data] control thread has finished
[2025-06-05 22:59:34] 2025-06-06 02:59:25,715 | INFO     | [payload] control thread has finished
[2025-06-05 22:59:34] 2025-06-06 02:59:25,753 | INFO     | all job control threads have been joined
[2025-06-05 22:59:34] 2025-06-06 02:59:25,802 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 22:59:34] 2025-06-06 02:59:25,847 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 22:59:34] 2025-06-06 02:59:26,087 | INFO     | [data] copytool_in thread has finished
[2025-06-05 22:59:34] 2025-06-06 02:59:26,161 | INFO     | [payload] validate_post thread has finished
[2025-06-05 22:59:34] 2025-06-06 02:59:26,464 | INFO     | [payload] failed_post thread has finished
[2025-06-05 22:59:34] 2025-06-06 02:59:26,759 | INFO     | [job] control thread has finished
[2025-06-05 22:59:34] 2025-06-06 02:59:27,522 | INFO     | [data] copytool_out thread has finished
[2025-06-05 22:59:34] 2025-06-06 02:59:28,073 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 22:59:34] 2025-06-06 02:59:29,254 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140473300784960)>', '<ExcThread(monitor, started 140472836138752)>']
[2025-06-05 22:59:34] 2025-06-06 02:59:30,099 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 22:59:34] 2025-06-06 02:59:30,104 | INFO     | [monitor] control thread has ended
[2025-06-05 22:59:34] 2025-06-06 02:59:34,279 | INFO     | all workflow threads have been joined
[2025-06-05 22:59:34] 2025-06-06 02:59:34,279 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 22:59:34] 2025-06-06 02:59:34,280 | INFO     | traces error code: 0
[2025-06-05 22:59:34] 2025-06-06 02:59:34,280 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 22:59:34] 2025-06-06 02:59:34,364 [wrapper] ==== pilot stdout END ====
[2025-06-05 22:59:34] 2025-06-06 02:59:34,368 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 22:59:34] 2025-06-06 02:59:34,372 [wrapper] pilotpid: 28436
[2025-06-05 22:59:34] 2025-06-06 02:59:34,375 [wrapper] Pilot exit status: 0
[2025-06-05 22:59:34] 2025-06-06 02:59:34,390 [wrapper] pandaids: 6678391469
[2025-06-05 22:59:34] 2025-06-06 02:59:34,428 [wrapper] cleanup supervisor_pilot  2683 28437
[2025-06-05 22:59:34] 2025-06-06 02:59:34,432 [wrapper] Test setup, not cleaning
[2025-06-05 22:59:34] 2025-06-06 02:59:34,436 [wrapper] apfmon messages muted
[2025-06-05 22:59:34] 2025-06-06 02:59:34,440 [wrapper] ==== wrapper stdout END ====
[2025-06-05 22:59:34] 2025-06-06 02:59:34,443 [wrapper] ==== wrapper stderr END ====
[2025-06-05 22:59:34]  *** Error codes and diagnostics ***
[2025-06-05 22:59:34]     "exeErrorCode": 0,
[2025-06-05 22:59:34]     "exeErrorDiag": "",
[2025-06-05 22:59:34]     "pilotErrorCode": 0,
[2025-06-05 22:59:34]     "pilotErrorDiag": "",
[2025-06-05 22:59:34]  *** Listing of results directory ***
[2025-06-05 22:59:34] total 386416
[2025-06-05 22:59:34] -rw-r--r-- 1 boincer umatlas    495897 Jun  4 03:04 pilot3.tar.gz
[2025-06-05 22:59:34] -rw-r--r-- 1 boincer umatlas      5111 Jun  4 03:29 queuedata.json
[2025-06-05 22:59:34] -rwx------ 1 boincer umatlas     37140 Jun  4 03:30 runpilot2-wrapper.sh
[2025-06-05 22:59:34] -rw-r--r-- 1 boincer umatlas       100 Jun  5 21:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 22:59:34] -rwxr-xr-x 1 boincer umatlas      7986 Jun  5 21:57 run_atlas
[2025-06-05 22:59:34] -rw-r--r-- 1 boincer umatlas       105 Jun  5 21:57 job.xml
[2025-06-05 22:59:34] -rw-r--r-- 2 boincer umatlas 217632793 Jun  5 21:57 EVNT.45006593._002194.pool.root.1
[2025-06-05 22:59:34] -rw-r--r-- 2 boincer umatlas     15093 Jun  5 21:57 start_atlas.sh
[2025-06-05 22:59:34] drwxrwx--x 2 boincer umatlas      4096 Jun  5 21:57 shared
[2025-06-05 22:59:34] -rw-r--r-- 2 boincer umatlas    508881 Jun  5 21:57 input.tar.gz
[2025-06-05 22:59:34] -rw-r--r-- 1 boincer umatlas         0 Jun  5 21:57 boinc_lockfile
[2025-06-05 22:59:34] -rw-r--r-- 1 boincer umatlas      2525 Jun  5 21:57 pandaJob.out
[2025-06-05 22:59:34] -rw------- 1 boincer umatlas    987721 Jun  5 21:57 agis_schedconf.cvmfs.json
[2025-06-05 22:59:34] -rw------- 1 boincer umatlas   1598969 Jun  5 21:57 agis_ddmendpoints.agis.ALL.json
[2025-06-05 22:59:34] drwx------ 4 boincer umatlas      4096 Jun  5 21:57 pilot3
[2025-06-05 22:59:34] -rw-r--r-- 1 boincer umatlas      5867 Jun  5 22:55 init_data.xml
[2025-06-05 22:59:34] -rw------- 1 boincer umatlas 172796045 Jun  5 22:58 HITS.45006595._054831.pool.root.1
[2025-06-05 22:59:34] -rw-r--r-- 1 boincer umatlas       529 Jun  5 22:58 boinc_task_state.xml
[2025-06-05 22:59:34] -rw------- 1 boincer umatlas      1044 Jun  5 22:59 memory_monitor_summary.json
[2025-06-05 22:59:34] -rw------- 1 boincer umatlas        95 Jun  5 22:59 pilot_heartbeat.json
[2025-06-05 22:59:34] -rw------- 1 boincer umatlas    345811 Jun  5 22:59 log.45006595._054831.job.log.tgz.1
[2025-06-05 22:59:34] -rw------- 1 boincer umatlas      7744 Jun  5 22:59 heartbeat.json
[2025-06-05 22:59:34] -rw-r--r-- 1 boincer umatlas        27 Jun  5 22:59 wrapper_checkpoint.txt
[2025-06-05 22:59:34] -rw-r--r-- 1 boincer umatlas      8192 Jun  5 22:59 boinc_mmap_file
[2025-06-05 22:59:34] -rw------- 1 boincer umatlas      4476 Jun  5 22:59 pilotlog.txt
[2025-06-05 22:59:34] -rw------- 1 boincer umatlas    367108 Jun  5 22:59 log.45006595._054831.job.log.1
[2025-06-05 22:59:34] -rw------- 1 boincer umatlas       357 Jun  5 22:59 output.list
[2025-06-05 22:59:34] -rw-r--r-- 1 boincer umatlas       620 Jun  5 22:59 runtime_log
[2025-06-05 22:59:34] -rw------- 1 boincer umatlas    737280 Jun  5 22:59 result.tar.gz
[2025-06-05 22:59:34] -rw------- 1 boincer umatlas       659 Jun  5 22:59 vQxLDmOlxg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmMdnKDmlYulFo.diag
[2025-06-05 22:59:34] -rw-r--r-- 1 boincer umatlas      8661 Jun  5 22:59 runtime_log.err
[2025-06-05 22:59:34] -rw-r--r-- 1 boincer umatlas     22116 Jun  5 22:59 stderr.txt
[2025-06-05 22:59:34] HITS file was successfully produced:
[2025-06-05 22:59:34] -rw------- 1 boincer umatlas 172796045 Jun  5 22:58 shared/HITS.pool.root.1
[2025-06-05 22:59:34]  *** Contents of shared directory: ***
[2025-06-05 22:59:34] total 382520
[2025-06-05 22:59:34] -rw-r--r-- 2 boincer umatlas 217632793 Jun  5 21:57 ATLAS.root_0
[2025-06-05 22:59:34] -rw-r--r-- 2 boincer umatlas     15093 Jun  5 21:57 start_atlas.sh
[2025-06-05 22:59:34] -rw-r--r-- 2 boincer umatlas    508881 Jun  5 21:57 input.tar.gz
[2025-06-05 22:59:34] -rw------- 1 boincer umatlas 172796045 Jun  5 22:58 HITS.pool.root.1
[2025-06-05 22:59:34] -rw------- 1 boincer umatlas    737280 Jun  5 22:59 result.tar.gz
22:59:35 (24836): run_atlas exited; CPU time 39447.361570
22:59:35 (24836): called boinc_finish(0)

</stderr_txt>
]]>

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