Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:37:40 (5485): wrapper (7.7.26015): starting
10:37:40 (5485): wrapper: running run_atlas (--nthreads 8)
[2025-06-06 10:37:40] Arguments: --nthreads 8
[2025-06-06 10:37:40] Threads: 8
[2025-06-06 10:37:40] Checking for CVMFS
[2025-06-06 10:37:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 10:37:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 10:37:42] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 10:37:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 10:37:43] 2.11.2.0 5632 35852 95992 146847 0 265 23041361 25165824 4034 130560 0 18354118 99.796 20841280 2184 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-06 10:37:43] CVMFS is ok
[2025-06-06 10:37:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 10:37:43] Checking for apptainer binary...
[2025-06-06 10:37:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 10:37:43] Running /usr/bin/apptainer --version
[2025-06-06 10:37:43] apptainer version 1.3.2-1.el7
[2025-06-06 10:37:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 10:37:45] cg-vwn252.simple-grid.lan
[2025-06-06 10:37:45] apptainer works
[2025-06-06 10:37:45] Set ATHENA_PROC_NUMBER=8
[2025-06-06 10:37:45] Set ATHENA_CORE_NUMBER=8
[2025-06-06 10:37:46] Starting ATLAS job with PandaID=6668947039
[2025-06-06 10:37:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 15:52:16]  *** The last 200 lines of the pilot log: ***
[2025-06-06 15:52:16] 2025-06-06 13:38:30,445 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 15:52:16] 2025-06-06 13:38:30,446 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 15:52:16] 2025-06-06 13:38:30,446 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 15:52:16] 2025-06-06 13:38:30,446 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 15:52:16] 2025-06-06 13:38:30,452 | INFO     | fitting pss+swap vs Time
[2025-06-06 15:52:16] 2025-06-06 13:38:30,453 | INFO     | sum of square deviations: 7720081493.0
[2025-06-06 15:52:16] 2025-06-06 13:38:30,456 | INFO     | sum of deviations: -111542374353.99998
[2025-06-06 15:52:16] 2025-06-06 13:38:30,456 | INFO     | mean x: 1749208086.5
[2025-06-06 15:52:16] 2025-06-06 13:38:30,462 | INFO     | mean y: 2569272.9589041094
[2025-06-06 15:52:16] 2025-06-06 13:38:30,462 | INFO     | -- intersect: 25275725182.561554
[2025-06-06 15:52:16] 2025-06-06 13:38:30,462 | INFO     | intersect: 25275725182.561554
[2025-06-06 15:52:16] 2025-06-06 13:38:30,463 | INFO     | chi2: 2.6999416154041684
[2025-06-06 15:52:16] 2025-06-06 13:38:30,463 | INFO     | sum of square deviations: 7330250928.0
[2025-06-06 15:52:16] 2025-06-06 13:38:30,466 | INFO     | sum of deviations: -89044148296.0
[2025-06-06 15:52:16] 2025-06-06 13:38:30,466 | INFO     | mean x: 1749207934.0
[2025-06-06 15:52:16] 2025-06-06 13:38:30,466 | INFO     | mean y: 2577968.8362369337
[2025-06-06 15:52:16] 2025-06-06 13:38:30,466 | INFO     | -- intersect: 21251063485.29764
[2025-06-06 15:52:16] 2025-06-06 13:38:30,466 | INFO     | intersect: 21251063485.29764
[2025-06-06 15:52:16] 2025-06-06 13:38:30,467 | INFO     | chi2: 1.9287442748001025
[2025-06-06 15:52:16] 2025-06-06 13:38:30,467 | INFO     | current chi2=1.9287442748001025 (change=28.56348212139474 %)
[2025-06-06 15:52:16] 2025-06-06 13:38:30,467 | INFO     | sum of square deviations: 6953769450.5
[2025-06-06 15:52:16] 2025-06-06 13:38:30,470 | INFO     | sum of deviations: -86275143759.0
[2025-06-06 15:52:16] 2025-06-06 13:38:30,470 | INFO     | mean x: 1749207781.5
[2025-06-06 15:52:16] 2025-06-06 13:38:30,470 | INFO     | mean y: 2579090.595744681
[2025-06-06 15:52:16] 2025-06-06 13:38:30,471 | INFO     | -- intersect: 21704931158.426064
[2025-06-06 15:52:16] 2025-06-06 13:38:30,471 | INFO     | intersect: 21704931158.426064
[2025-06-06 15:52:16] 2025-06-06 13:38:30,471 | INFO     | chi2: 1.9254284039121876
[2025-06-06 15:52:16] 2025-06-06 13:38:30,471 | INFO     | current chi2=1.9254284039121876 (change=0.17191863800910115 %)
[2025-06-06 15:52:16] 2025-06-06 13:38:30,471 | INFO     | right removable region: 281
[2025-06-06 15:52:16] 2025-06-06 13:38:30,472 | INFO     | sum of square deviations: 7330250928.0
[2025-06-06 15:52:16] 2025-06-06 13:38:30,474 | INFO     | sum of deviations: -160008873629.0
[2025-06-06 15:52:16] 2025-06-06 13:38:30,475 | INFO     | mean x: 1749208239.0
[2025-06-06 15:52:16] 2025-06-06 13:38:30,475 | INFO     | mean y: 2588100.56445993
[2025-06-06 15:52:16] 2025-06-06 13:38:30,475 | INFO     | -- intersect: 38185297371.24451
[2025-06-06 15:52:16] 2025-06-06 13:38:30,475 | INFO     | intersect: 38185297371.24451
[2025-06-06 15:52:16] 2025-06-06 13:38:30,475 | INFO     | chi2: 1.1386527451450412
[2025-06-06 15:52:16] 2025-06-06 13:38:30,476 | INFO     | current chi2=1.1386527451450412 (change=57.82676415487635 %)
[2025-06-06 15:52:16] 2025-06-06 13:38:30,476 | INFO     | sum of square deviations: 6953769450.5
[2025-06-06 15:52:16] 2025-06-06 13:38:30,479 | INFO     | sum of deviations: -164948961038.5
[2025-06-06 15:52:16] 2025-06-06 13:38:30,484 | INFO     | mean x: 1749208391.5
[2025-06-06 15:52:16] 2025-06-06 13:38:30,485 | INFO     | mean y: 2590088.0177304964
[2025-06-06 15:52:16] 2025-06-06 13:38:30,485 | INFO     | -- intersect: 41495209144.72293
[2025-06-06 15:52:16] 2025-06-06 13:38:30,485 | INFO     | intersect: 41495209144.72293
[2025-06-06 15:52:16] 2025-06-06 13:38:30,486 | INFO     | chi2: 1.0753328382328906
[2025-06-06 15:52:16] 2025-06-06 13:38:30,486 | INFO     | current chi2=1.0753328382328906 (change=5.560949743645061 %)
[2025-06-06 15:52:16] 2025-06-06 13:38:30,486 | INFO     | left removable region: 20
[2025-06-06 15:52:16] 2025-06-06 13:38:30,486 | INFO     | sum of square deviations: 5513070810.0
[2025-06-06 15:52:16] 2025-06-06 13:38:30,488 | INFO     | sum of deviations: -126801758106.00002
[2025-06-06 15:52:16] 2025-06-06 13:38:30,489 | INFO     | mean x: 1749208361.0
[2025-06-06 15:52:16] 2025-06-06 13:38:30,489 | INFO     | mean y: 2596139.421455939
[2025-06-06 15:52:16] 2025-06-06 13:38:30,489 | INFO     | -- intersect: 40234746806.92118
[2025-06-06 15:52:16] 2025-06-06 13:38:30,489 | INFO     | intersect: 40234746806.92118
[2025-06-06 15:52:16] 2025-06-06 13:38:30,489 | INFO     | chi2: 0.2711539947743891
[2025-06-06 15:52:16] 2025-06-06 13:38:30,490 | INFO     | -- intersect: 40234746806.92118
[2025-06-06 15:52:16] 2025-06-06 13:38:30,490 | INFO     | current memory leak: -23.00 B/s (using 261 data points, chi2=0.27)
[2025-06-06 15:52:16] 2025-06-06 13:38:30,491 | INFO     | ..............................
[2025-06-06 15:52:16] 2025-06-06 13:38:30,491 | INFO     | . Timing measurements:
[2025-06-06 15:52:16] 2025-06-06 13:38:30,491 | INFO     | . get job = 0 s
[2025-06-06 15:52:16] 2025-06-06 13:38:30,491 | INFO     | . initial setup = 2 s
[2025-06-06 15:52:16] 2025-06-06 13:38:30,491 | INFO     | . payload setup = 17 s
[2025-06-06 15:52:16] 2025-06-06 13:38:30,491 | INFO     | . stage-in = 0 s
[2025-06-06 15:52:16] 2025-06-06 13:38:30,491 | INFO     | . payload execution = 17815 s
[2025-06-06 15:52:16] 2025-06-06 13:38:30,491 | INFO     | . stage-out = 3 s
[2025-06-06 15:52:16] 2025-06-06 13:38:30,492 | INFO     | . log creation = 1 s
[2025-06-06 15:52:16] 2025-06-06 13:38:30,492 | INFO     | ..............................
[2025-06-06 15:52:16] 2025-06-06 13:38:31,076 | INFO     | PID=9547 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-06 15:52:16] 2025-06-06 13:38:31,077 | INFO     | .. there are 9 such processes running
[2025-06-06 15:52:16] 2025-06-06 13:38:31,163 | INFO     | 
[2025-06-06 15:52:16] 2025-06-06 13:38:31,164 | INFO     | job summary report
[2025-06-06 15:52:16] 2025-06-06 13:38:31,164 | INFO     | --------------------------------------------------
[2025-06-06 15:52:16] 2025-06-06 13:38:31,164 | INFO     | PanDA job id: 6668947039
[2025-06-06 15:52:16] 2025-06-06 13:38:31,164 | INFO     | task id: 44871837
[2025-06-06 15:52:16] 2025-06-06 13:38:31,164 | INFO     | errors: (none)
[2025-06-06 15:52:16] 2025-06-06 13:38:31,164 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 15:52:16] 2025-06-06 13:38:31,164 | INFO     | pilot state: finished 
[2025-06-06 15:52:16] 2025-06-06 13:38:31,164 | INFO     | transexitcode: 0
[2025-06-06 15:52:16] 2025-06-06 13:38:31,164 | INFO     | exeerrorcode: 0
[2025-06-06 15:52:16] 2025-06-06 13:38:31,164 | INFO     | exeerrordiag: 
[2025-06-06 15:52:16] 2025-06-06 13:38:31,165 | INFO     | exitcode: 0
[2025-06-06 15:52:16] 2025-06-06 13:38:31,165 | INFO     | exitmsg: OK
[2025-06-06 15:52:16] 2025-06-06 13:38:31,165 | INFO     | cpuconsumptiontime: 68247 s
[2025-06-06 15:52:16] 2025-06-06 13:38:31,165 | INFO     | nevents: 400
[2025-06-06 15:52:16] 2025-06-06 13:38:31,165 | INFO     | neventsw: 0
[2025-06-06 15:52:16] 2025-06-06 13:38:31,165 | INFO     | pid: 18162
[2025-06-06 15:52:16] 2025-06-06 13:38:31,165 | INFO     | pgrp: 18162
[2025-06-06 15:52:16] 2025-06-06 13:38:31,165 | INFO     | corecount: 8
[2025-06-06 15:52:16] 2025-06-06 13:38:31,165 | INFO     | event service: False
[2025-06-06 15:52:16] 2025-06-06 13:38:31,165 | INFO     | sizes: {0: 2397392, 1: 2397392, 11: 2397626, 12: 2397654, 17838: 2429294, 17843: 2438237, 17845: 2438421, 17939: 2438591}
[2025-06-06 15:52:16] 2025-06-06 13:38:31,165 | INFO     | --------------------------------------------------
[2025-06-06 15:52:16] 2025-06-06 13:38:31,165 | INFO     | 
[2025-06-06 15:52:16] 2025-06-06 13:38:31,166 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-06-06 15:52:16] 2025-06-06 13:38:31,700 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 15:52:16] 2025-06-06 13:38:31,700 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 15:52:16] 2025-06-06 13:38:31,700 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 15:52:16] 2025-06-06 13:38:31,700 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 15:52:16] 2025-06-06 13:38:31,700 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 15:52:16] 2025-06-06 13:38:31,701 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 15:52:16] 2025-06-06 13:38:31,701 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 15:52:16] 2025-06-06 13:38:31,701 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 15:52:16] 2025-06-06 13:38:31,701 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 15:52:16] 2025-06-06 13:38:31,701 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 15:52:16] 2025-06-06 13:38:31,701 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 15:52:16] 2025-06-06 13:38:31,701 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 15:52:16] 2025-06-06 13:38:31,701 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 15:52:16] 2025-06-06 13:38:31,701 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 15:52:16] 2025-06-06 13:38:31,701 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 15:52:16] 2025-06-06 13:38:31,701 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 15:52:16] 2025-06-06 13:38:31,702 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 15:52:16] 2025-06-06 13:38:31,702 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 15:52:16] 2025-06-06 13:38:31,702 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 15:52:16] 2025-06-06 13:38:31,702 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 15:52:16] 2025-06-06 13:38:31,702 | INFO     | job 6668947039 has completed (purged errors)
[2025-06-06 15:52:16] 2025-06-06 13:38:31,702 | INFO     | overall cleanup function is called
[2025-06-06 15:52:16] 2025-06-06 13:38:32,711 | INFO     | --- collectZombieJob: --- 10, [18162]
[2025-06-06 15:52:16] 2025-06-06 13:38:32,712 | INFO     | zombie collector waiting for pid 18162
[2025-06-06 15:52:16] 2025-06-06 13:38:32,712 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 15:52:16] 2025-06-06 13:38:32,712 | INFO     | collected zombie processes
[2025-06-06 15:52:16] 2025-06-06 13:38:32,712 | INFO     | will attempt to kill all subprocesses of pid=18162
[2025-06-06 15:52:16] 2025-06-06 13:38:32,850 | INFO     | process IDs to be killed: [18162] (in reverse order)
[2025-06-06 15:52:16] 2025-06-06 13:38:33,709 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 15:52:16] 2025-06-06 13:38:33,709 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 15:52:16] 2025-06-06 13:38:33,713 | INFO     | did not find any defunct processes belonging to 18162
[2025-06-06 15:52:16] 2025-06-06 13:38:33,715 | INFO     | did not find any defunct processes belonging to 18162
[2025-06-06 15:52:16] 2025-06-06 13:38:33,716 | INFO     | ready for new job
[2025-06-06 15:52:16] 2025-06-06 13:38:33,716 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 15:52:16] 2025-06-06 13:38:33,718 | INFO     | **************************************
[2025-06-06 15:52:16] 2025-06-06 13:38:33,718 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 15:52:16] 2025-06-06 13:38:33,718 | INFO     | **************************************
[2025-06-06 15:52:16] 2025-06-06 13:38:33,718 | INFO     | 
[2025-06-06 15:52:16] 2025-06-06 13:38:33,719 | INFO     | pilot is running in a VM
[2025-06-06 15:52:16] 2025-06-06 13:38:33,719 | INFO     | architecture information:
[2025-06-06 15:52:16] 2025-06-06 13:38:33,720 | INFO     | executing command: cat /etc/os-release
[2025-06-06 15:52:16] 2025-06-06 13:38:33,974 | INFO     | cat /etc/os-release:
[2025-06-06 15:52:16] NAME="CentOS Linux"
[2025-06-06 15:52:16] VERSION="7 (Core)"
[2025-06-06 15:52:16] ID="centos"
[2025-06-06 15:52:16] ID_LIKE="rhel fedora"
[2025-06-06 15:52:16] VERSION_ID="7"
[2025-06-06 15:52:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 15:52:16] ANSI_COLOR="0;31"
[2025-06-06 15:52:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 15:52:16] HOME_URL="https://www.centos.org/"
[2025-06-06 15:52:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 15:52:16] 
[2025-06-06 15:52:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 15:52:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 15:52:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 15:52:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 15:52:16] 
[2025-06-06 15:52:16] 2025-06-06 13:38:33,974 | INFO     | **************************************
[2025-06-06 15:52:16] 2025-06-06 13:38:34,478 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-06-06 15:52:16] 2025-06-06 13:38:34,782 | INFO     | sufficient remaining disk space (497568186368 B)
[2025-06-06 15:52:16] 2025-06-06 13:38:34,782 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 15:52:16] 2025-06-06 13:38:34,782 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 15:52:16] 2025-06-06 13:38:34,782 | INFO     | update_server=False
[2025-06-06 15:52:16] 2025-06-06 13:38:34,782 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 15:52:16] 2025-06-06 13:38:35,090 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 15:52:16] 2025-06-06 13:38:35,091 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 15:52:16] 2025-06-06 13:38:35,091 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 15:52:16] 2025-06-06 13:38:35,313 | INFO     | all data control threads have been joined
[2025-06-06 15:52:16] 2025-06-06 13:38:35,422 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 15:52:16] 2025-06-06 13:38:35,667 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 15:52:16] 2025-06-06 13:38:35,668 | INFO     | aborting loop
[2025-06-06 15:52:16] 2025-06-06 13:38:35,679 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 15:52:16] 2025-06-06 13:38:35,789 | INFO     | [job] retrieve thread has finished
[2025-06-06 15:52:16] 2025-06-06 13:38:35,838 | INFO     | all job control threads have been joined
[2025-06-06 15:52:16] 2025-06-06 13:38:35,956 | INFO     | [payload] validate_post thread has finished
[2025-06-06 15:52:16] 2025-06-06 13:38:36,034 | INFO     | [data] copytool_in thread has finished
[2025-06-06 15:52:16] 2025-06-06 13:38:36,213 | INFO     | [payload] failed_post thread has finished
[2025-06-06 15:52:16] 2025-06-06 13:38:36,288 | INFO     | all payload control threads have been joined
[2025-06-06 15:52:16] 2025-06-06 13:38:36,319 | INFO     | [data] control thread has finished
[2025-06-06 15:52:16] 2025-06-06 13:38:36,491 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 15:52:16] 2025-06-06 13:38:36,524 | INFO     | [job] validate thread has finished
[2025-06-06 15:52:16] 2025-06-06 13:38:36,674 | INFO     | [job] job monitor thread has finished
[2025-06-06 15:52:16] 2025-06-06 13:38:36,685 | INFO     | [job] queue monitor thread has finished
[2025-06-06 15:52:16] 2025-06-06 13:38:36,797 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 15:52:16] 2025-06-06 13:38:36,844 | INFO     | [job] control thread has finished
[2025-06-06 15:52:16] 2025-06-06 13:38:36,894 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 15:52:16] 2025-06-06 13:38:37,060 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 15:52:16] 2025-06-06 13:38:37,294 | INFO     | [payload] control thread has finished
[2025-06-06 15:52:16] 2025-06-06 13:38:37,429 | INFO     | [data] copytool_out thread has finished
[2025-06-06 15:52:16] 2025-06-06 13:38:37,580 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 15:52:16] 2025-06-06 13:38:41,589 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 15:52:16] 2025-06-06 13:38:42,698 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140665473144640)>', '<ExcThread(monitor, started 140665027532544)>']
[2025-06-06 15:52:16] 2025-06-06 13:38:43,137 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 15:52:16] 2025-06-06 13:38:43,138 | INFO     | [monitor] control thread has ended
[2025-06-06 15:52:16] 2025-06-06 13:38:47,724 | INFO     | all workflow threads have been joined
[2025-06-06 15:52:16] 2025-06-06 13:38:47,725 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 15:52:16] 2025-06-06 13:38:47,725 | INFO     | traces error code: 0
[2025-06-06 15:52:16] 2025-06-06 13:38:47,725 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 15:52:16] 2025-06-06 13:38:48,148 [wrapper] ==== pilot stdout END ====
[2025-06-06 15:52:16] 2025-06-06 13:38:48,252 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 15:52:16] 2025-06-06 13:38:48,320 [wrapper] pilotpid: 9547
[2025-06-06 15:52:16] 2025-06-06 13:38:48,417 [wrapper] Pilot exit status: 0
[2025-06-06 15:52:16] 2025-06-06 13:38:48,771 [wrapper] pandaids: 6668947039
[2025-06-06 15:52:16] 2025-06-06 13:38:49,509 [wrapper] cleanup supervisor_pilot 20995 9548
[2025-06-06 15:52:16] 2025-06-06 13:38:49,563 [wrapper] Test setup, not cleaning
[2025-06-06 15:52:16] 2025-06-06 13:38:49,639 [wrapper] apfmon messages muted
[2025-06-06 15:52:16] 2025-06-06 13:38:49,744 [wrapper] ==== wrapper stdout END ====
[2025-06-06 15:52:16] 2025-06-06 13:38:49,825 [wrapper] ==== wrapper stderr END ====
[2025-06-06 15:52:16]  *** Error codes and diagnostics ***
[2025-06-06 15:52:16]     "exeErrorCode": 0,
[2025-06-06 15:52:16]     "exeErrorDiag": "",
[2025-06-06 15:52:16]     "pilotErrorCode": 0,
[2025-06-06 15:52:16]     "pilotErrorDiag": "",
[2025-06-06 15:52:16]  *** Listing of results directory ***
[2025-06-06 15:52:16] total 415340
[2025-06-06 15:52:16] -rw-r--r--. 1 boinc boinc    495897 May 28 23:08 pilot3.tar.gz
[2025-06-06 15:52:16] -rw-r--r--. 1 boinc boinc      5111 May 28 23:35 queuedata.json
[2025-06-06 15:52:16] -rwx------. 1 boinc boinc     37140 May 28 23:36 runpilot2-wrapper.sh
[2025-06-06 15:52:16] -rw-r--r--. 1 boinc boinc       100 Jun  6 10:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 15:52:16] -rwxr-xr-x. 1 boinc boinc      7986 Jun  6 10:37 run_atlas
[2025-06-06 15:52:16] -rw-r--r--. 1 boinc boinc       105 Jun  6 10:37 job.xml
[2025-06-06 15:52:16] -rw-r--r--. 2 boinc boinc 222513213 Jun  6 10:37 EVNT.44871834._003536.pool.root.1
[2025-06-06 15:52:16] -rw-r--r--. 1 boinc boinc      6391 Jun  6 10:37 init_data.xml
[2025-06-06 15:52:16] -rw-r--r--. 2 boinc boinc     15093 Jun  6 10:37 start_atlas.sh
[2025-06-06 15:52:16] drwxrwx--x. 2 boinc boinc        68 Jun  6 10:37 shared
[2025-06-06 15:52:16] -rw-r--r--. 2 boinc boinc    508880 Jun  6 10:37 input.tar.gz
[2025-06-06 15:52:16] -rw-r--r--. 1 boinc boinc         0 Jun  6 10:37 boinc_lockfile
[2025-06-06 15:52:16] -rw-r--r--. 1 boinc boinc      2558 Jun  6 10:37 pandaJob.out
[2025-06-06 15:52:16] -rw-------. 1 boinc boinc    987967 Jun  6 10:39 agis_schedconf.cvmfs.json
[2025-06-06 15:52:16] drwx------. 4 boinc boinc      4096 Jun  6 10:39 pilot3
[2025-06-06 15:52:16] -rw-------. 1 boinc boinc 195081727 Jun  6 15:35 HITS.44871837._090881.pool.root.1
[2025-06-06 15:52:16] -rw-r--r--. 1 boinc boinc       531 Jun  6 15:35 boinc_task_state.xml
[2025-06-06 15:52:16] -rw-------. 1 boinc boinc      1016 Jun  6 15:36 memory_monitor_summary.json
[2025-06-06 15:52:16] -rw-------. 1 boinc boinc   1598969 Jun  6 15:36 agis_ddmendpoints.agis.ALL.json
[2025-06-06 15:52:16] -rw-------. 1 boinc boinc    407183 Jun  6 15:36 log.44871837._090881.job.log.tgz.1
[2025-06-06 15:52:16] -rw-------. 1 boinc boinc        95 Jun  6 15:37 pilot_heartbeat.json
[2025-06-06 15:52:16] -rw-------. 1 boinc boinc      7694 Jun  6 15:38 heartbeat.json
[2025-06-06 15:52:16] -rw-------. 1 boinc boinc      4417 Jun  6 15:38 pilotlog.txt
[2025-06-06 15:52:16] -rw-------. 1 boinc boinc   1536119 Jun  6 15:38 log.44871837._090881.job.log.1
[2025-06-06 15:52:16] -rw-------. 1 boinc boinc       357 Jun  6 15:38 output.list
[2025-06-06 15:52:16] -rw-r--r--. 1 boinc boinc       620 Jun  6 15:38 runtime_log
[2025-06-06 15:52:16] -rw-------. 1 boinc boinc   1966080 Jun  6 15:38 result.tar.gz
[2025-06-06 15:52:16] -rw-r--r--. 1 boinc boinc      8673 Jun  6 15:38 runtime_log.err
[2025-06-06 15:52:16] -rw-------. 1 boinc boinc       656 Jun  6 15:38 Ft3NDm5cde7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZ8cKDmsyqEkn.diag
[2025-06-06 15:52:16] -rw-r--r--. 1 boinc boinc      8192 Jun  6 15:52 boinc_mmap_file
[2025-06-06 15:52:16] -rw-r--r--. 1 boinc boinc        28 Jun  6 15:52 wrapper_checkpoint.txt
[2025-06-06 15:52:16] -rw-r--r--. 1 boinc boinc     20538 Jun  6 15:52 stderr.txt
[2025-06-06 15:52:16] HITS file was successfully produced:
[2025-06-06 15:52:16] -rw-------. 1 boinc boinc 195081727 Jun  6 15:35 shared/HITS.pool.root.1
[2025-06-06 15:52:16]  *** Contents of shared directory: ***
[2025-06-06 15:52:16] total 410248
[2025-06-06 15:52:16] -rw-r--r--. 2 boinc boinc 222513213 Jun  6 10:37 ATLAS.root_0
[2025-06-06 15:52:16] -rw-r--r--. 2 boinc boinc     15093 Jun  6 10:37 start_atlas.sh
[2025-06-06 15:52:16] -rw-r--r--. 2 boinc boinc    508880 Jun  6 10:37 input.tar.gz
[2025-06-06 15:52:16] -rw-------. 1 boinc boinc 195081727 Jun  6 15:35 HITS.pool.root.1
[2025-06-06 15:52:16] -rw-------. 1 boinc boinc   1966080 Jun  6 15:38 result.tar.gz
15:52:18 (5485): run_atlas exited; CPU time 68474.538256
15:52:18 (5485): called boinc_finish(0)

</stderr_txt>
]]>

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