Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:00:59 (1969950): wrapper (7.7.26015): starting
20:00:59 (1969950): wrapper: running run_atlas (--nthreads 10)
[2025-06-05 20:00:59] Arguments: --nthreads 10
[2025-06-05 20:00:59] Threads: 10
[2025-06-05 20:00:59] Checking for CVMFS
[2025-06-05 20:00:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 20:00:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 20:00:59] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 20:01:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 20:01:00] 2.12.6.0 5977 3437 263632 146836 0 336 17895926 32935936 28652 16776704 0 24116334 99.657 20731312 22827 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 20:01:00] CVMFS is ok
[2025-06-05 20:01:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 20:01:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 20:01:00] Further information can be found at the LHC@home message board.
[2025-06-05 20:01:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 20:01:00] Checking for apptainer binary...
[2025-06-05 20:01:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 20:01:00] Running /usr/bin/apptainer --version
[2025-06-05 20:01:00] apptainer version 1.4.1-1.el9
[2025-06-05 20:01:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 20:01:00] c-1-3.aglt2.org
[2025-06-05 20:01:00] apptainer works
[2025-06-05 20:01:00] Set ATHENA_PROC_NUMBER=10
[2025-06-05 20:01:00] Set ATHENA_CORE_NUMBER=10
[2025-06-05 20:01:00] Starting ATLAS job with PandaID=6677919811
[2025-06-05 20:01:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 21:18:10]  *** The last 200 lines of the pilot log: ***
[2025-06-05 21:18:10]  workdir=None
[2025-06-05 21:18:10] ]
[2025-06-05 21:18:10] 2025-06-06 01:17:39,251 | INFO     | transferring file log.45006595._041737.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6677919811/log.45006595._041737.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-05 21:18:10] 2025-06-06 01:17:39,251 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6677919811/log.45006595._041737.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._041737.job
[2025-06-05 21:18:10] 2025-06-06 01:17:39,270 | INFO     | adding to output.list: log.45006595._041737.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b7/93/log.45006595._041737.job.log.tg
[2025-06-05 21:18:10] 2025-06-06 01:17:39,271 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 21:18:10] 2025-06-06 01:17:39,272 | INFO     | summary of transferred files:
[2025-06-05 21:18:10] 2025-06-06 01:17:39,272 | INFO     |  -- lfn=log.45006595._041737.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 21:18:10] 2025-06-06 01:17:39,272 | INFO     | stage-out finished correctly
[2025-06-05 21:18:10] 2025-06-06 01:17:40,010 | WARNING  | process 1986535 can no longer be monitored (due to stat problems) - aborting
[2025-06-05 21:18:10] 2025-06-06 01:17:40,010 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677919811/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 21:18:10] 2025-06-06 01:17:40,012 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677919811/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 21:18:10] 2025-06-06 01:17:40,014 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3867256 B
[2025-06-05 21:18:10] 2025-06-06 01:17:40,014 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15542 B
[2025-06-05 21:18:10] 2025-06-06 01:17:40,014 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 21:18:10] 2025-06-06 01:17:40,033 | INFO     | sufficient remaining disk space (75899076608 B)
[2025-06-05 21:18:10] 2025-06-06 01:17:40,034 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-05 21:18:10] 2025-06-06 01:17:40,034 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6677919811: 4165833 B (within 2537553920 B limit)
[2025-06-05 21:18:10] 2025-06-06 01:17:40,035 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6677919811/HITS.45006595._041737.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-05 21:18:10] 2025-06-06 01:17:40,035 | INFO     | total size of present files: 0 B (workdir size: 4165833 B)
[2025-06-05 21:18:10] 2025-06-06 01:17:40,035 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6677919811/HITS.45006595._041737.pool.root.1 since it does not exist
[2025-06-05 21:18:10] 2025-06-06 01:17:40,544 | INFO     | number of running child processes to parent process 1986535: 1
[2025-06-05 21:18:10] 2025-06-06 01:17:40,544 | INFO     | maximum number of monitored processes: 6
[2025-06-05 21:18:10] 2025-06-06 01:17:42,039 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 21:18:10] 2025-06-06 01:17:43,047 | INFO     | monitor loop #317: job 0:6677919811 is in state 'finished'
[2025-06-05 21:18:10] 2025-06-06 01:17:43,047 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 21:18:10] 2025-06-06 01:17:44,470 | INFO     | job 6677919811 has state=finished
[2025-06-05 21:18:10] 2025-06-06 01:17:44,470 | INFO     | preparing for final server update for job 6677919811 in state='finished'
[2025-06-05 21:18:10] 2025-06-06 01:17:44,471 | INFO     | this job has now completed (state=finished)
[2025-06-05 21:18:10] 2025-06-06 01:17:44,471 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 21:18:10] 2025-06-06 01:17:44,471 | INFO     | log transfer has been attempted: DONE
[2025-06-05 21:18:10] 2025-06-06 01:17:44,471 | INFO     | job 6677919811 has finished - writing final server update
[2025-06-05 21:18:10] 2025-06-06 01:17:44,472 | INFO     | total number of processed events: 400 (read)
[2025-06-05 21:18:10] 2025-06-06 01:17:44,489 | INFO     | executing command: lscpu
[2025-06-05 21:18:10] 2025-06-06 01:17:44,568 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 21:18:10] 2025-06-06 01:17:45,550 | INFO     | monitor loop #318: job 0:6677919811 is in state 'finished'
[2025-06-05 21:18:10] 2025-06-06 01:17:45,550 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 21:18:10] 2025-06-06 01:17:48,053 | INFO     | monitor loop #319: job 0:6677919811 is in state 'finished'
[2025-06-05 21:18:10] 2025-06-06 01:17:48,053 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 21:18:10] 2025-06-06 01:17:49,108 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-05 21:18:10] 2025-06-06 01:17:49,108 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677919811/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 21:18:10] 2025-06-06 01:17:49,109 | INFO     | extracted standard info from prmon json
[2025-06-05 21:18:10] 2025-06-06 01:17:49,109 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 21:18:10] 2025-06-06 01:17:49,109 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 21:18:10] 2025-06-06 01:17:49,109 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 21:18:10] 2025-06-06 01:17:49,109 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 21:18:10] 2025-06-06 01:17:49,111 | INFO     | fitting pss+swap vs Time
[2025-06-05 21:18:10] 2025-06-06 01:17:49,112 | INFO     | sum of square deviations: 97479037.0
[2025-06-05 21:18:10] 2025-06-06 01:17:49,112 | INFO     | sum of deviations: -3047869849.5000005
[2025-06-05 21:18:10] 2025-06-06 01:17:49,112 | INFO     | mean x: 1749170452.5
[2025-06-05 21:18:10] 2025-06-06 01:17:49,112 | INFO     | mean y: 2284391.779411765
[2025-06-05 21:18:10] 2025-06-06 01:17:49,112 | INFO     | -- intersect: 54693467726.0077
[2025-06-05 21:18:10] 2025-06-06 01:17:49,112 | INFO     | intersect: 54693467726.0077
[2025-06-05 21:18:10] 2025-06-06 01:17:49,112 | INFO     | chi2: 0.04802419066622884
[2025-06-05 21:18:10] 2025-06-06 01:17:49,113 | INFO     | -- intersect: 54693467726.0077
[2025-06-05 21:18:10] 2025-06-06 01:17:49,113 | INFO     | current memory leak: -31.27 B/s (using 68 data points, chi2=0.05)
[2025-06-05 21:18:10] 2025-06-06 01:17:49,113 | INFO     | ..............................
[2025-06-05 21:18:10] 2025-06-06 01:17:49,113 | INFO     | . Timing measurements:
[2025-06-05 21:18:10] 2025-06-06 01:17:49,113 | INFO     | . get job = 0 s
[2025-06-05 21:18:10] 2025-06-06 01:17:49,113 | INFO     | . initial setup = 3 s
[2025-06-05 21:18:10] 2025-06-06 01:17:49,113 | INFO     | . payload setup = 8 s
[2025-06-05 21:18:10] 2025-06-06 01:17:49,113 | INFO     | . stage-in = 0 s
[2025-06-05 21:18:10] 2025-06-06 01:17:49,114 | INFO     | . payload execution = 4556 s
[2025-06-05 21:18:10] 2025-06-06 01:17:49,114 | INFO     | . stage-out = 0 s
[2025-06-05 21:18:10] 2025-06-06 01:17:49,114 | INFO     | . log creation = 0 s
[2025-06-05 21:18:10] 2025-06-06 01:17:49,114 | INFO     | ..............................
[2025-06-05 21:18:10] 2025-06-06 01:17:49,208 | INFO     | 
[2025-06-05 21:18:10] 2025-06-06 01:17:49,209 | INFO     | job summary report
[2025-06-05 21:18:10] 2025-06-06 01:17:49,209 | INFO     | --------------------------------------------------
[2025-06-05 21:18:10] 2025-06-06 01:17:49,209 | INFO     | PanDA job id: 6677919811
[2025-06-05 21:18:10] 2025-06-06 01:17:49,209 | INFO     | task id: 45006595
[2025-06-05 21:18:10] 2025-06-06 01:17:49,209 | INFO     | errors: (none)
[2025-06-05 21:18:10] 2025-06-06 01:17:49,209 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 21:18:10] 2025-06-06 01:17:49,209 | INFO     | pilot state: finished 
[2025-06-05 21:18:10] 2025-06-06 01:17:49,209 | INFO     | transexitcode: 0
[2025-06-05 21:18:10] 2025-06-06 01:17:49,209 | INFO     | exeerrorcode: 0
[2025-06-05 21:18:10] 2025-06-06 01:17:49,209 | INFO     | exeerrordiag: 
[2025-06-05 21:18:10] 2025-06-06 01:17:49,209 | INFO     | exitcode: 0
[2025-06-05 21:18:10] 2025-06-06 01:17:49,209 | INFO     | exitmsg: OK
[2025-06-05 21:18:10] 2025-06-06 01:17:49,209 | INFO     | cpuconsumptiontime: 38985 s
[2025-06-05 21:18:10] 2025-06-06 01:17:49,210 | INFO     | nevents: 400
[2025-06-05 21:18:10] 2025-06-06 01:17:49,210 | INFO     | neventsw: 0
[2025-06-05 21:18:10] 2025-06-06 01:17:49,210 | INFO     | pid: 1986535
[2025-06-05 21:18:10] 2025-06-06 01:17:49,210 | INFO     | pgrp: 1986535
[2025-06-05 21:18:10] 2025-06-06 01:17:49,210 | INFO     | corecount: 10
[2025-06-05 21:18:10] 2025-06-06 01:17:49,210 | INFO     | event service: False
[2025-06-05 21:18:10] 2025-06-06 01:17:49,210 | INFO     | sizes: {0: 2397342, 5: 2397548, 11: 2397604, 4568: 2423656, 4570: 2432597, 4573: 2432681, 4580: 2432979}
[2025-06-05 21:18:10] 2025-06-06 01:17:49,210 | INFO     | --------------------------------------------------
[2025-06-05 21:18:10] 2025-06-06 01:17:49,210 | INFO     | 
[2025-06-05 21:18:10] 2025-06-06 01:17:49,210 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 21:18:10] 2025-06-06 01:17:49,233 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 21:18:10] 2025-06-06 01:17:49,233 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 21:18:10] 2025-06-06 01:17:49,233 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 21:18:10] 2025-06-06 01:17:49,234 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 21:18:10] 2025-06-06 01:17:49,234 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 21:18:10] 2025-06-06 01:17:49,234 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 21:18:10] 2025-06-06 01:17:49,234 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 21:18:10] 2025-06-06 01:17:49,234 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 21:18:10] 2025-06-06 01:17:49,234 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 21:18:10] 2025-06-06 01:17:49,234 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 21:18:10] 2025-06-06 01:17:49,234 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 21:18:10] 2025-06-06 01:17:49,234 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 21:18:10] 2025-06-06 01:17:49,234 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 21:18:10] 2025-06-06 01:17:49,234 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 21:18:10] 2025-06-06 01:17:49,234 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 21:18:10] 2025-06-06 01:17:49,234 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 21:18:10] 2025-06-06 01:17:49,235 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 21:18:10] 2025-06-06 01:17:49,235 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 21:18:10] 2025-06-06 01:17:49,235 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 21:18:10] 2025-06-06 01:17:49,235 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 21:18:10] 2025-06-06 01:17:49,235 | INFO     | job 6677919811 has completed (purged errors)
[2025-06-05 21:18:10] 2025-06-06 01:17:49,235 | INFO     | overall cleanup function is called
[2025-06-05 21:18:10] 2025-06-06 01:17:50,243 | INFO     | --- collectZombieJob: --- 10, [1986535]
[2025-06-05 21:18:10] 2025-06-06 01:17:50,243 | INFO     | zombie collector waiting for pid 1986535
[2025-06-05 21:18:10] 2025-06-06 01:17:50,243 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 21:18:10] 2025-06-06 01:17:50,243 | INFO     | collected zombie processes
[2025-06-05 21:18:10] 2025-06-06 01:17:50,243 | INFO     | will attempt to kill all subprocesses of pid=1986535
[2025-06-05 21:18:10] 2025-06-06 01:17:50,591 | INFO     | process IDs to be killed: [1986535] (in reverse order)
[2025-06-05 21:18:10] 2025-06-06 01:17:50,727 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 21:18:10] 2025-06-06 01:17:50,728 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 21:18:10] 2025-06-06 01:17:50,748 | INFO     | did not find any defunct processes belonging to 1986535
[2025-06-05 21:18:10] 2025-06-06 01:17:50,769 | INFO     | did not find any defunct processes belonging to 1986535
[2025-06-05 21:18:10] 2025-06-06 01:17:50,769 | INFO     | ready for new job
[2025-06-05 21:18:10] 2025-06-06 01:17:50,769 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 21:18:10] 2025-06-06 01:17:50,771 | INFO     | **************************************
[2025-06-05 21:18:10] 2025-06-06 01:17:50,771 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 21:18:10] 2025-06-06 01:17:50,771 | INFO     | **************************************
[2025-06-05 21:18:10] 2025-06-06 01:17:50,772 | INFO     | 
[2025-06-05 21:18:10] 2025-06-06 01:17:50,789 | INFO     | architecture information:
[2025-06-05 21:18:10] 2025-06-06 01:17:50,790 | INFO     | executing command: cat /etc/os-release
[2025-06-05 21:18:10] 2025-06-06 01:17:50,806 | INFO     | cat /etc/os-release:
[2025-06-05 21:18:10] NAME="CentOS Linux"
[2025-06-05 21:18:10] VERSION="7 (Core)"
[2025-06-05 21:18:10] ID="centos"
[2025-06-05 21:18:10] ID_LIKE="rhel fedora"
[2025-06-05 21:18:10] VERSION_ID="7"
[2025-06-05 21:18:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 21:18:10] ANSI_COLOR="0;31"
[2025-06-05 21:18:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 21:18:10] HOME_URL="https://www.centos.org/"
[2025-06-05 21:18:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 21:18:10] 
[2025-06-05 21:18:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 21:18:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 21:18:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 21:18:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 21:18:10] 
[2025-06-05 21:18:10] 2025-06-06 01:17:50,806 | INFO     | **************************************
[2025-06-05 21:18:10] 2025-06-06 01:17:51,309 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 21:18:10] 2025-06-06 01:17:51,326 | INFO     | sufficient remaining disk space (75902222336 B)
[2025-06-05 21:18:10] 2025-06-06 01:17:51,327 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 21:18:10] 2025-06-06 01:17:51,327 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 21:18:10] 2025-06-06 01:17:51,327 | INFO     | update_server=False
[2025-06-05 21:18:10] 2025-06-06 01:17:51,327 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 21:18:10] 2025-06-06 01:17:51,327 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 21:18:10] 2025-06-06 01:17:51,328 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 21:18:10] 2025-06-06 01:17:51,328 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 21:18:10] 2025-06-06 01:17:51,328 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 21:18:10] 2025-06-06 01:17:51,434 | INFO     | all payload control threads have been joined
[2025-06-05 21:18:10] 2025-06-06 01:17:51,508 | INFO     | all data control threads have been joined
[2025-06-05 21:18:10] 2025-06-06 01:17:51,561 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 21:18:10] 2025-06-06 01:17:51,561 | INFO     | aborting loop
[2025-06-05 21:18:10] 2025-06-06 01:17:51,807 | INFO     | all job control threads have been joined
[2025-06-05 21:18:10] 2025-06-06 01:17:52,332 | INFO     | [job] retrieve thread has finished
[2025-06-05 21:18:10] 2025-06-06 01:17:52,366 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 21:18:10] 2025-06-06 01:17:52,439 | INFO     | [payload] control thread has finished
[2025-06-05 21:18:10] 2025-06-06 01:17:52,513 | INFO     | [data] control thread has finished
[2025-06-05 21:18:10] 2025-06-06 01:17:52,537 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 21:18:10] 2025-06-06 01:17:52,564 | INFO     | [job] job monitor thread has finished
[2025-06-05 21:18:10] 2025-06-06 01:17:52,649 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 21:18:10] 2025-06-06 01:17:52,812 | INFO     | [job] control thread has finished
[2025-06-05 21:18:10] 2025-06-06 01:17:52,816 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 21:18:10] 2025-06-06 01:17:53,011 | INFO     | [job] validate thread has finished
[2025-06-05 21:18:10] 2025-06-06 01:17:53,157 | INFO     | [payload] validate_post thread has finished
[2025-06-05 21:18:10] 2025-06-06 01:17:53,258 | INFO     | [data] copytool_in thread has finished
[2025-06-05 21:18:10] 2025-06-06 01:17:53,499 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 21:18:10] 2025-06-06 01:17:53,846 | INFO     | [payload] failed_post thread has finished
[2025-06-05 21:18:10] 2025-06-06 01:17:54,219 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 21:18:10] 2025-06-06 01:17:54,381 | INFO     | [data] copytool_out thread has finished
[2025-06-05 21:18:10] 2025-06-06 01:17:55,225 | INFO     | [job] queue monitor thread has finished
[2025-06-05 21:18:10] 2025-06-06 01:17:56,655 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 21:18:10] 2025-06-06 01:18:01,851 | INFO     | job.realtimelogging is not enabled
[2025-06-05 21:18:10] 2025-06-06 01:18:02,856 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 21:18:10] 2025-06-06 01:18:04,792 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140623075223360)>', '<ExcThread(monitor, started 140622455367424)>']
[2025-06-05 21:18:10] 2025-06-06 01:18:05,400 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 21:18:10] 2025-06-06 01:18:05,400 | INFO     | [monitor] control thread has ended
[2025-06-05 21:18:10] 2025-06-06 01:18:09,817 | INFO     | all workflow threads have been joined
[2025-06-05 21:18:10] 2025-06-06 01:18:09,817 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 21:18:10] 2025-06-06 01:18:09,818 | INFO     | traces error code: 0
[2025-06-05 21:18:10] 2025-06-06 01:18:09,818 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 21:18:10] 2025-06-06 01:18:09,993 [wrapper] ==== pilot stdout END ====
[2025-06-05 21:18:10] 2025-06-06 01:18:09,997 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 21:18:10] 2025-06-06 01:18:10,001 [wrapper] pilotpid: 1973563
[2025-06-05 21:18:10] 2025-06-06 01:18:10,004 [wrapper] Pilot exit status: 0
[2025-06-05 21:18:10] 2025-06-06 01:18:10,018 [wrapper] pandaids: 6677919811
[2025-06-05 21:18:10] 2025-06-06 01:18:10,144 [wrapper] cleanup supervisor_pilot 2543693 1973564
[2025-06-05 21:18:10] 2025-06-06 01:18:10,147 [wrapper] Test setup, not cleaning
[2025-06-05 21:18:10] 2025-06-06 01:18:10,150 [wrapper] apfmon messages muted
[2025-06-05 21:18:10] 2025-06-06 01:18:10,153 [wrapper] ==== wrapper stdout END ====
[2025-06-05 21:18:10] 2025-06-06 01:18:10,156 [wrapper] ==== wrapper stderr END ====
[2025-06-05 21:18:10]  *** Error codes and diagnostics ***
[2025-06-05 21:18:10]     "exeErrorCode": 0,
[2025-06-05 21:18:10]     "exeErrorDiag": "",
[2025-06-05 21:18:10]     "pilotErrorCode": 0,
[2025-06-05 21:18:10]     "pilotErrorDiag": "",
[2025-06-05 21:18:10]  *** Listing of results directory ***
[2025-06-05 21:18:10] total 393060
[2025-06-05 21:18:10] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 13:46 pilot3.tar.gz
[2025-06-05 21:18:10] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 14:01 queuedata.json
[2025-06-05 21:18:10] -rwx------. 1 boincer umatlas     37140 Jun  3 14:02 runpilot2-wrapper.sh
[2025-06-05 21:18:10] -rw-r--r--. 1 boincer umatlas       100 Jun  5 20:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 21:18:10] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 20:00 run_atlas
[2025-06-05 21:18:10] -rw-r--r--. 1 boincer umatlas       105 Jun  5 20:00 job.xml
[2025-06-05 21:18:10] -rw-r--r--. 2 boincer umatlas 218758383 Jun  5 20:00 EVNT.45006593._001673.pool.root.1
[2025-06-05 21:18:10] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 20:00 start_atlas.sh
[2025-06-05 21:18:10] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 20:00 shared
[2025-06-05 21:18:10] -rw-r--r--. 2 boincer umatlas    508887 Jun  5 20:00 input.tar.gz
[2025-06-05 21:18:10] -rw-r--r--. 1 boincer umatlas         0 Jun  5 20:00 boinc_lockfile
[2025-06-05 21:18:10] -rw-r--r--. 1 boincer umatlas      2525 Jun  5 20:01 pandaJob.out
[2025-06-05 21:18:10] -rw-------. 1 boincer umatlas    987721 Jun  5 20:01 agis_schedconf.cvmfs.json
[2025-06-05 21:18:10] -rw-------. 1 boincer umatlas   1598969 Jun  5 20:01 agis_ddmendpoints.agis.ALL.json
[2025-06-05 21:18:10] drwx------. 4 boincer umatlas      4096 Jun  5 20:01 pilot3
[2025-06-05 21:18:10] -rw-r--r--. 1 boincer umatlas      6837 Jun  5 21:11 init_data.xml
[2025-06-05 21:18:10] -rw-------. 1 boincer umatlas 178339060 Jun  5 21:17 HITS.45006595._041737.pool.root.1
[2025-06-05 21:18:10] -rw-r--r--. 1 boincer umatlas       529 Jun  5 21:17 boinc_task_state.xml
[2025-06-05 21:18:10] -rw-------. 1 boincer umatlas        95 Jun  5 21:17 pilot_heartbeat.json
[2025-06-05 21:18:10] -rw-------. 1 boincer umatlas      1041 Jun  5 21:17 memory_monitor_summary.json
[2025-06-05 21:18:10] -rw-------. 1 boincer umatlas    339030 Jun  5 21:17 log.45006595._041737.job.log.tgz.1
[2025-06-05 21:18:10] -rw-------. 1 boincer umatlas      7711 Jun  5 21:17 heartbeat.json
[2025-06-05 21:18:10] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 21:18 boinc_mmap_file
[2025-06-05 21:18:10] -rw-r--r--. 1 boincer umatlas        27 Jun  5 21:18 wrapper_checkpoint.txt
[2025-06-05 21:18:10] -rw-------. 1 boincer umatlas      4548 Jun  5 21:18 pilotlog.txt
[2025-06-05 21:18:10] -rw-------. 1 boincer umatlas    445105 Jun  5 21:18 log.45006595._041737.job.log.1
[2025-06-05 21:18:10] -rw-------. 1 boincer umatlas       357 Jun  5 21:18 output.list
[2025-06-05 21:18:10] -rw-r--r--. 1 boincer umatlas       620 Jun  5 21:18 runtime_log
[2025-06-05 21:18:10] -rw-------. 1 boincer umatlas    798720 Jun  5 21:18 result.tar.gz
[2025-06-05 21:18:10] -rw-------. 1 boincer umatlas       650 Jun  5 21:18 vIFODmY9kg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmhalKDmMFJQpn.diag
[2025-06-05 21:18:10] -rw-r--r--. 1 boincer umatlas      8646 Jun  5 21:18 runtime_log.err
[2025-06-05 21:18:10] -rw-r--r--. 1 boincer umatlas     22503 Jun  5 21:18 stderr.txt
[2025-06-05 21:18:10] HITS file was successfully produced:
[2025-06-05 21:18:10] -rw-------. 1 boincer umatlas 178339060 Jun  5 21:17 shared/HITS.pool.root.1
[2025-06-05 21:18:10]  *** Contents of shared directory: ***
[2025-06-05 21:18:10] total 389096
[2025-06-05 21:18:10] -rw-r--r--. 2 boincer umatlas 218758383 Jun  5 20:00 ATLAS.root_0
[2025-06-05 21:18:10] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 20:00 start_atlas.sh
[2025-06-05 21:18:10] -rw-r--r--. 2 boincer umatlas    508887 Jun  5 20:00 input.tar.gz
[2025-06-05 21:18:10] -rw-------. 1 boincer umatlas 178339060 Jun  5 21:17 HITS.pool.root.1
[2025-06-05 21:18:10] -rw-------. 1 boincer umatlas    798720 Jun  5 21:18 result.tar.gz
21:18:11 (1969950): run_atlas exited; CPU time 39214.252590
21:18:11 (1969950): called boinc_finish(0)

</stderr_txt>
]]>

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